Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00121 Brassica carinata HOM05D001354 ORTHO05D091317 7.1e-130 467.6 300 100.0
BcaNung03481 Brassica carinata HOM05D001354 ORTHO05D093896 6.1e-73 278.5 219 73.1
A10p32190 Brassica napus HOM05D001354 ORTHO05D007486 2.4e-29 133.7 189 51.9
BraA10t45262Z Brassica rapa HOM05D001354 ORTHO05D007486 2.4e-29 133.7 189 51.9
C09p72990 Brassica napus HOM05D001354 ORTHO05D007486 7.1e-29 132.1 189 50.8
BolC9t60034H Brassica oleracea HOM05D001354 ORTHO05D007486 7.1e-29 132.1 189 50.8
BcaC06g32097 Brassica carinata HOM05D001354 ORTHO05D007486 9.2e-29 131.7 189 50.8
Sp6g38800 Schrenkiella parvula HOM05D001354 ORTHO05D007486 1.6e-28 131.0 189 50.8
Thhalv10013128m.g Eutrema salsugineum HOM05D001354 ORTHO05D007486 3.5e-28 129.8 189 49.7
AL6G13540 Arabidopsis lyrata HOM05D001354 ORTHO05D007486 1.3e-27 127.9 189 49.7
AT5G03940 Arabidopsis thaliana HOM05D001354 ORTHO05D007486 1.3e-27 127.9 189 49.7
Carub.0006s0289 Capsella rubella HOM05D001354 ORTHO05D007486 1.3e-27 127.9 189 49.7
CARHR209330 Cardamine hirsuta HOM05D001354 ORTHO05D007486 1.7e-27 127.5 189 49.7
BcaB05g21794 Brassica carinata HOM05D001354 ORTHO05D007486 3.9e-27 126.3 189 48.7
THA.LOC104826945 Tarenaya hassleriana HOM05D001354 ORTHO05D007486 1.5e-26 124.4 189 48.1
Aa31LG1G21360 Aethionema arabicum HOM05D001354 ORTHO05D007486 1.9e-26 124.0 189 48.7
FAN05G2413 Fragaria x ananassa HOM05D001354 ORTHO05D007486 1.9e-26 124.0 151 53.6
FAN14G3045 Fragaria x ananassa HOM05D001354 ORTHO05D007486 1.9e-26 124.0 151 53.6
BcaC03g12975 Brassica carinata HOM05D001354 ORTHO05D007486 9.6e-26 121.7 189 47.6
BolC2t06127H Brassica oleracea HOM05D001354 ORTHO05D007486 9.6e-26 121.7 189 47.6
BraA02t04793Z Brassica rapa HOM05D001354 ORTHO05D007486 9.6e-26 121.7 189 47.6
FAN02G4160 Fragaria x ananassa HOM05D001354 ORTHO05D007486 9.6e-26 121.7 151 53.0
C02p01620 Brassica napus HOM05D001354 ORTHO05D007486 2.1e-25 120.6 189 47.1
SGA_v2.0_scaffold35G14056 Striga asiatica HOM05D001354 ORTHO05D007486 6.2e-25 119.0 189 47.1
Gohir.A04G061900 Gossypium hirsutum HOM05D001354 ORTHO05D007486 1.1e-24 118.2 189 46.0
Gohir.D04G098700 Gossypium hirsutum HOM05D001354 ORTHO05D007486 1.1e-24 118.2 189 46.0
Gorai.009G401100 Gossypium raimondii HOM05D001354 ORTHO05D007486 1.1e-24 118.2 189 46.0
MD12G1027100 Malus domestica HOM05D001354 ORTHO05D007486 2.4e-24 117.1 189 45.5
TPR.G23362 Trifolium pratense HOM05D001354 ORTHO05D007486 4.0e-24 116.3 189 45.0
CANSAT64G2635 Cannabis sativa HOM05D001354 ORTHO05D007486 5.2e-24 115.9 189 45.0
MD14G1027200 Malus domestica HOM05D001354 ORTHO05D007486 5.2e-24 115.9 189 45.0
CDE07G0063 Ceratophyllum demersum HOM05D001354 ORTHO05D007486 6.9e-24 115.5 162 50.0
Thecc.05G090900 Theobroma cacao HOM05D001354 ORTHO05D007486 6.9e-24 115.5 189 45.0
AUR62006196 Chenopodium quinoa HOM05D001354 ORTHO05D007486 8.9e-24 115.2 181 45.9
HanXRQChr08g0229841 Helianthus annuus HOM05D001354 ORTHO05D007486 8.9e-24 115.2 189 45.5
Ciclev10011285m.g Citrus clementina HOM05D001354 ORTHO05D007486 1.2e-23 114.8 189 45.0
Duzib128G1904 Durio zibethinus HOM05D001354 ORTHO05D007486 1.2e-23 114.8 189 45.5
QL07p038630 Quercus lobata HOM05D001354 ORTHO05D007486 1.2e-23 114.8 189 44.4
MELO3C024550.2 Cucumis melo HOM05D001354 ORTHO05D007486 1.5e-23 114.4 189 45.0
Peaxi162Scf00404g00116 Petunia axillaris HOM05D001354 ORTHO05D007486 2.0e-23 114.0 189 46.0
Prupe.7G104500 Prunus persica HOM05D001354 ORTHO05D007486 2.0e-23 114.0 189 44.4
CsaV3_6G040720 Cucumis sativus L. HOM05D001354 ORTHO05D007486 2.6e-23 113.6 189 44.4
ECA247G1665 Erigeron canadensis HOM05D001354 ORTHO05D007486 2.6e-23 113.6 189 44.4
PGR004G0555 Punica granatum HOM05D001354 ORTHO05D007486 2.6e-23 113.6 189 43.9
Potri.016G078600 Populus trichocarpa HOM05D001354 ORTHO05D007486 3.4e-23 113.2 189 43.9
Sed0006925 Sechium edule HOM05D001354 ORTHO05D007486 3.4e-23 113.2 189 44.4
GSVIVG01033862001 Vitis vinifera HOM05D001354 ORTHO05D007486 3.4e-23 113.2 189 43.9
Ah.15g090690 Amaranthus hybridus HOM05D001354 ORTHO05D007486 4.4e-23 112.8 189 43.9
COL.COLO4_29709 Corchorus olitorius HOM05D001354 ORTHO05D007486 4.4e-23 112.8 154 52.6
Duzib093G0955 Durio zibethinus HOM05D001354 ORTHO05D007486 4.4e-23 112.8 189 44.4
Sabra16G0082900 Salix brachista HOM05D001354 ORTHO05D007486 4.4e-23 112.8 189 43.9
Solyc09g009940.3 Solanum lycopersicum HOM05D001354 ORTHO05D007486 4.4e-23 112.8 189 45.0
Sopen09g004690 Solanum pennellii HOM05D001354 ORTHO05D007486 4.4e-23 112.8 189 45.0
PGSC0003DMG400008871 Solanum tuberosum HOM05D001354 ORTHO05D007486 4.4e-23 112.8 189 45.0
Cc06_g05970 Coffea canephora HOM05D001354 ORTHO05D007486 5.8e-23 112.5 189 44.4
Nitab4.5_0000692g0200 Nicotiana tabacum HOM05D001354 ORTHO05D007486 5.8e-23 112.5 189 44.4
CAN.G397.64 Capsicum annuum HOM05D001354 ORTHO05D007486 7.6e-23 112.1 189 44.4
AUR62037024 Chenopodium quinoa HOM05D001354 ORTHO05D007486 7.6e-23 112.1 189 43.9
ClCG04G010090 Citrullus lanatus HOM05D001354 ORTHO05D007486 7.6e-23 112.1 189 43.9
Migut.L01789 Erythranthe guttata HOM05D001354 ORTHO05D007486 7.6e-23 112.1 189 45.0
Glyma.03G196900 Glycine max HOM05D001354 ORTHO05D007486 7.6e-23 112.1 189 44.4
Glyma.19G194985 Glycine max HOM05D001354 ORTHO05D007486 7.6e-23 112.1 189 44.4
Lj1g0015071 Lotus japonicus HOM05D001354 ORTHO05D007486 7.6e-23 112.1 189 44.4
Cfa009072 Carpinus fangiana HOM05D001354 ORTHO05D007486 9.9e-23 111.7 189 42.9
Ca_09014_v3 Cicer arietinum L. HOM05D001354 ORTHO05D007486 9.9e-23 111.7 189 43.9
Lsat_1_v5_gn_9_20661 Lactuca sativa HOM05D001354 ORTHO05D007486 9.9e-23 111.7 189 44.4
TWI74G0096 Tripterygium wilfordii HOM05D001354 ORTHO05D007486 1.3e-22 111.3 189 43.4
Cpa.g.sc5.5 Carica papaya HOM05D001354 ORTHO05D007486 1.7e-22 110.9 189 44.4
Medtr7g104890 Medicago truncatula HOM05D001354 ORTHO05D007486 1.7e-22 110.9 189 43.9
VMungo1383G1548 Vigna mungo HOM05D001354 ORTHO05D007486 1.7e-22 110.9 189 43.9
Manes.08G026300 Manihot esculenta HOM05D001354 ORTHO05D007486 2.2e-22 110.5 189 44.4
Lalb_Chr20g0111661 Lupinus albus HOM05D001354 ORTHO05D007486 2.9e-22 110.2 189 42.9
Eucgr.A02656 Eucalyptus grandis HOM05D001354 ORTHO05D007486 3.8e-22 109.8 189 42.9
Lalb_Chr25g0288291 Lupinus albus HOM05D001354 ORTHO05D007486 3.8e-22 109.8 189 42.3
ATR0776G078 Amborella trichopoda HOM05D001354 ORTHO05D007486 4.9e-22 109.4 189 42.9
TAR623G0908 Trochodendron aralioides HOM05D001354 ORTHO05D007486 4.9e-22 109.4 189 43.4
CiPaw.09G015300 Carya illinoinensis HOM05D001354 ORTHO05D007486 6.4e-22 109.0 189 42.9
Dinv31698 Davidia involucrata HOM05D001354 ORTHO05D007486 6.4e-22 109.0 189 43.4
Phvul.001G191200 Phaseolus vulgaris HOM05D001354 ORTHO05D007486 6.4e-22 109.0 189 43.4
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 8.4e-22 108.6 189 43.4
Oeu017685.1 Olea europaea HOM05D001354 ORTHO05D007486 8.4e-22 108.6 193 42.5
FvH4_6g19110 Fragaria vesca HOM05D001354 ORTHO05D007486 1.1e-21 108.2 189 42.9
Lj2A139G33 Lonicera japonica HOM05D001354 ORTHO05D007486 1.1e-21 108.2 189 43.9
Rhsim04G0132500 Rhododendron simsii HOM05D001354 ORTHO05D007486 1.1e-21 108.2 189 43.9
RcHm_v2.0_Chr3g0474211 Rosa chinensis HOM05D001354 ORTHO05D007486 1.1e-21 108.2 189 42.9
Sed0016317 Sechium edule HOM05D001354 ORTHO05D007486 1.1e-21 108.2 189 43.4
Sc02g0003670 Simmondsia chinensis HOM05D001354 ORTHO05D007486 1.1e-21 108.2 189 42.9
DCAR_020740 Daucus carota HOM05D001354 ORTHO05D007486 2.4e-21 107.1 189 43.4
PSO339G0273 Papaver somniferum HOM05D001354 ORTHO05D007486 2.4e-21 107.1 189 42.9
Sabra06G0163100 Salix brachista HOM05D001354 ORTHO05D007486 2.4e-21 107.1 202 42.1
Psat3g032320 Pisum sativum HOM05D001354 ORTHO05D007486 4.2e-21 106.3 189 42.3
TAR369G1154 Trochodendron aralioides HOM05D001354 ORTHO05D007486 4.2e-21 106.3 189 42.3
Aqoxy4G02758 Aquilegia oxysepala HOM05D001354 ORTHO05D007486 5.4e-21 105.9 189 41.8
Potri.006G211500 Populus trichocarpa HOM05D001354 ORTHO05D007486 7.1e-21 105.5 189 42.9
unitig_578.g16364 Utricularia gibba HOM05D001354 ORTHO05D007486 7.1e-21 105.5 192 42.2
arahy.Tifrunner.gnm1.ann1.KBFV5H Arachis hypogaea HOM05D001354 ORTHO05D007486 9.3e-21 105.1 189 41.8
CSS0014332 Camellia sinensis var. sinensis HOM05D001354 ORTHO05D007486 1.2e-20 104.8 189 42.3
arahy.Tifrunner.gnm1.ann1.6W7F9R Arachis hypogaea HOM05D001354 ORTHO05D007486 1.6e-20 104.4 189 41.8
PSO384G2091 Papaver somniferum HOM05D001354 ORTHO05D007486 2.1e-20 104.0 189 41.8
CDE04G0653 Ceratophyllum demersum HOM05D001354 ORTHO05D007486 2.7e-20 103.6 189 42.3
Zm00001eb406840 Zea mays HOM05D001354 ORTHO05D007486 2.7e-20 103.6 189 41.3
SEGI_32484 Sequoiadendron giganteum HOM05D001354 ORTHO05D007486 1.0e-19 101.7 189 41.3
MSTRG.26635 Avicennia marina HOM05D001354 ORTHO05D007486 1.3e-19 101.3 189 42.3
CiPaw.10G010900 Carya illinoinensis HOM05D001354 ORTHO05D007486 6.6e-19 99.0 189 40.2
Pp3c8_7200 Physcomitrium patens HOM05D001354 ORTHO05D007486 1.5e-18 97.8 189 38.1
Mapoly0005s0040 Marchantia polymorpha HOM05D001354 ORTHO05D007486 1.9e-18 97.4 189 39.2
MBI11_g26443_MAGBIO Magnolia biondii HOM05D001354 ORTHO05D007486 2.5e-18 97.1 189 39.7
HPP92_009892 Vanilla planifolia HOM05D001354 ORTHO05D007486 4.3e-18 96.3 189 40.2
Os11g0153700 Oryza sativa ssp. japonica HOM05D001354 ORTHO05D007486 2.1e-17 94.0 189 38.1
Lj3A996T80 Lonicera japonica HOM05D001354 ORTHO05D007486 2.8e-17 93.6 119 53.8
Haze_12107 Corylus avellana HOM05D001354 ORTHO05D007486 8.1e-17 92.0 76 71.1
AagrBONN_evm.TU.Sc2ySwM_228.5146 Anthoceros agrestis HOM05D001354 ORTHO05D007486 2.4e-16 90.5 189 36.5
MSTRG.10373 Avicennia marina HOM05D001354 ORTHO05D007486 5.3e-16 89.4 92 62.0
vmacro08868 Vaccinium macrocarpon HOM05D001354 ORTHO05D007486 6.9e-16 89.0 77 68.8
Actinidia07924 Actinidia chinensis HOM05D001354 ORTHO05D007486 9.0e-16 88.6 172 42.4
SMO356G0244 Selaginella moellendorffii HOM05D001354 ORTHO05D007486 9.0e-16 88.6 189 38.1
Hund19917 Selenicereus undatus HOM05D001354 ORTHO05D007486 2.6e-15 87.0 92 59.8
Sc02g0000320 Simmondsia chinensis HOM05D001354 ORTHO05D007486 4.5e-15 86.3 92 58.7
Lj1g0026731 Lotus japonicus HOM05D001354 ORTHO05D007486 1.7e-14 84.3 103 54.4
BcaC06g33529 Brassica carinata HOM05D006116 ORTHO05D007795 2.1e-12 77.4 117 61.5
Zm00001eb197120 Zea mays HOM05D001354 ORTHO05D007486 2.1e-12 77.4 77 55.8
CBR_g48177 Chara braunii HOM05D001354 ORTHO05D007486 3.5e-12 76.6 189 32.8
RcHm_v2.0_Chr2g0088451 Rosa chinensis HOM05D001354 ORTHO05D007486 3.9e-11 73.2 63 63.5
A03p50320 Brassica napus HOM05D006116 ORTHO05D007795 3.3e-10 70.1 118 59.3
Cre11.g479750 Chlamydomonas reinhardtii HOM05D001354 ORTHO05D007486 1.6e-09 67.8 84 51.2
C07p48610 Brassica napus HOM05D006116 ORTHO05D007795 2.8e-09 67.0 118 39.8
BolC7t45369H Brassica oleracea HOM05D006116 ORTHO05D007795 2.8e-09 67.0 118 39.8
BraA03t14121Z Brassica rapa HOM05D006116 ORTHO05D007795 2.8e-09 67.0 118 58.5
Atru.chr8.1481 Acer truncatum HOM05D001354 ORTHO05D007486 2.4e-08 63.9 59 64.4
Lj3A996G74 Lonicera japonica HOM05D001354 ORTHO05D007486 3.1e-08 63.5 39 82.1


User provided reference genes

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