Gene: AT5G03940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G03940
  • Transcript Identifier AT5G03940.1
  • Gene Type Coding gene
  • Location Chr5 : 1060265-1063257 : negative

Gene Family Information

  • ID HOM05D001354
  • #Genes/#Species 463/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G03940.1
  • symbol CPSRP54
  • Alias 54CP,54 CHLOROPLAST PROTEIN,FFC,FIFTY-FOUR CHLOROPLAST HOMOLOGUE,SRP54CP,SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN
  • uniprot P37107

Descriptions

  • Description chloroplast signal recognition particle 54 kDa subunit
  • Computational description chloroplast signal recognition particle 54 kDa subunit (CPSRP54); FUNCTIONS IN: 7S RNA binding, protein binding, mRNA binding, GTP binding, signal sequence binding; INVOLVED IN: protein import into chloroplast thylakoid membrane, SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition; LOCATED IN: chloroplast stroma, chloroplast, signal recognition particle, chloroplast targeting, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), Signal recognition particle, SRP (InterPro:IPR004780), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: Signal recognition particle, SRP54 subunit protein (TAIR:AT1G48900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006614
IEA
Gene OntologySRP-dependent cotranslational protein targeting to membrane
GO:0006614
IEA
InterProSRP-dependent cotranslational protein targeting to membrane
GO:0070208
IMP
GOA Databaseprotein heterotrimerization
GO:0045038
IDA
Gene Ontologyprotein import into chloroplast thylakoid membrane

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019904
IPI
GOA Databaseprotein domain specific binding
GO:0003924
IEA
Gene OntologyGTPase activity
GO:0003924
IEA
InterProGTPase activity
GO:0008312
IEA
Gene Ontology7S RNA binding
GO:0008312
IEA
InterPro7S RNA binding
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IEA
InterProGTP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0005048
IDA
Gene Ontologysignal sequence binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048500
IEA
GOA Databasesignal recognition particle
GO:0048500
IEA
InterProsignal recognition particle
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast2
GO:0009536
IEA
GOA Databaseplastid
GO:0005786
IEA
GOA Databasesignal recognition particle, endoplasmic reticulum targeting
GO:0009570
IEA
GOA Databasechloroplast stroma
GO:0009570
IDA, HDA
Gene Ontologychloroplast stroma3
GO:0032991
IDA
GOA Databaseprotein-containing complex
GO:0005886
HDA
Gene Ontologyplasma membrane4
GO:0080085
IMP
Gene Ontologysignal recognition particle, chloroplast targeting5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013822 Signal recognition particle SRP54, helical bundle
IPR004125 Signal recognition particle, SRP54 subunit, M-domain
IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily
IPR004780 Signal recognition particle protein
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain
IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily
IPR022941 Signal recognition particle, SRP54 subunit
IPR003593 AAA+ ATPase domain
Mapman id Description
23.1.7.3.2 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.SRP43-SRP54 transit complex.component cpSRP54