Gene: Sopen09g004690

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g004690
  • Transcript Identifier Sopen09g004690.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 3516111-3522939 : negative

Gene Family Information

  • ID HOM05D001354
  • #Genes/#Species 463/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g004690.1

Descriptions

  • Description mutant has Yellow first leaves | Chloroplast Signal Recognition Particle Subunit | chloroplast signal recognition particle 54 kDa subunit (CPSRP54) | FUNCTIONS IN: 7S RNA binding, protein binding, mRNA binding, GTP binding, signal sequence binding | INVOLVED IN: protein import into chloroplast thylakoid membrane, SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | LOCATED IN: chloroplast stroma, chloroplast, signal recognition particle, chloroplast targeting, signal recognition particle, endoplasmic reticulum targeting | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core , Signal recognition particle, SRP , Signal recognition particle, SRP54 subunit, helical bundle , Signal recognition particle, SRP54 subunit, M-domain , Signal recognition particle, SRP54 subunit, GTPase | BEST Arabidopsis thaliana protein match is: Signal recognition particle, SRP54 subunit protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006614
IEA
InterProSRP-dependent cotranslational protein targeting to membrane
GO:0045038
ISO
PLAZA Integrative Orthologyprotein import into chloroplast thylakoid membrane AT5G03940
GO:0070208
ISO
PLAZA Integrative Orthologyprotein heterotrimerization AT5G03940

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005525
IEA
InterProGTP binding
GO:0003924
IEA
InterProGTPase activity
GO:0008312
IEA
InterPro7S RNA binding
GO:0019904
ISO
PLAZA Integrative Orthologyprotein domain specific binding AT5G03940
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G03940
GO:0005048
ISO
PLAZA Integrative Orthologysignal sequence binding AT5G03940

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048500
IEA
InterProsignal recognition particle
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT5G03940
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G03940
GO:0080085
ISO
PLAZA Integrative Orthologysignal recognition particle, chloroplast targeting AT5G03940
GO:0032991
ISO
PLAZA Integrative Orthologyprotein-containing complex AT5G03940

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013822 Signal recognition particle SRP54, helical bundle
IPR022941 Signal recognition particle, SRP54 subunit
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR004125 Signal recognition particle, SRP54 subunit, M-domain
IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily
IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily
IPR004780 Signal recognition particle protein
IPR003593 AAA+ ATPase domain
IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain
Mapman id Description
23.1.7.3.2 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.SRP43-SRP54 transit complex.component cpSRP54