Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 1.8e-280 968.8 542 100.0
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 3.0e-256 888.3 548 91.8
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 2.3e-251 872.1 542 91.1
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 1.1e-250 869.8 548 88.9
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 4.0e-248 861.3 545 90.1
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 2.9e-246 855.1 544 89.3
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 5.4e-245 850.9 544 88.8
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 2.0e-244 849.0 548 89.2
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.9e-242 842.4 544 86.2
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 5.6e-242 840.9 554 89.0
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 6.2e-241 837.4 546 88.6
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 3.1e-240 835.1 431 94.0
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 2.0e-239 832.4 545 87.9
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 4.6e-236 821.2 537 89.0
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 6.0e-236 820.8 554 85.4
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 3.9e-235 818.1 554 85.2
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 2.4e-224 782.3 410 96.1
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.0e-219 765.4 563 79.9
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.1e-217 759.2 538 77.9
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 9.3e-189 664.1 424 74.3
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 3.5e-188 662.1 425 73.9
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 4.6e-188 661.8 451 72.9
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 6.1e-188 661.4 453 72.6
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.0e-187 660.6 441 73.0
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 2.3e-187 659.4 423 75.4
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 2.3e-187 659.4 455 72.1
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 3.0e-187 659.1 425 73.2
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 3.9e-187 658.7 436 72.7
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 6.7e-187 657.9 450 70.0
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 8.7e-187 657.5 435 73.3
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.9e-186 656.4 444 71.4
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 2.5e-186 656.0 441 72.1
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 2.5e-186 656.0 420 76.2
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 3.3e-186 655.6 436 72.7
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 7.4e-186 654.4 436 72.2
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 7.4e-186 654.4 436 72.5
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 9.7e-186 654.1 424 74.5
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 9.7e-186 654.1 453 72.0
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 9.7e-186 654.1 427 74.5
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 9.7e-186 654.1 438 73.7
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.3e-185 653.7 424 74.5
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.6e-185 653.3 442 71.3
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 2.2e-185 652.9 437 72.3
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 2.8e-185 652.5 425 73.2
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 4.8e-185 651.7 433 73.4
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 6.3e-185 651.4 426 73.5
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 1.8e-184 649.8 430 72.8
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 2.4e-184 649.4 450 70.2
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 9.0e-184 647.5 426 73.9
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 1.5e-183 646.7 454 70.7
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 2.0e-183 646.4 479 67.2
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 4.5e-183 645.2 431 72.6
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 2.2e-182 642.9 451 69.6
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 2.2e-182 642.9 436 72.5
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.1e-181 640.6 449 69.7
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.1e-181 640.6 449 69.7
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 1.1e-181 640.6 445 71.2
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 1.9e-181 639.8 420 74.5
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 1.9e-181 639.8 422 73.7
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 5.5e-181 638.3 422 73.5
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 2.1e-180 636.3 434 71.9
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 2.7e-180 636.0 422 72.0
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 2.7e-180 636.0 433 70.4
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 2.7e-180 636.0 424 74.3
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 6.1e-180 634.8 427 73.5
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 7.9e-180 634.4 453 71.3
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 1.0e-179 634.0 464 69.2
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 1.8e-179 633.3 426 71.6
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 6.7e-179 631.3 433 71.4
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.5e-178 630.2 420 72.4
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 2.2e-177 626.3 425 71.8
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 8.2e-177 624.4 425 71.5
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.4e-176 623.6 432 69.4
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 5.3e-176 621.7 449 69.5
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 9.1e-176 620.9 454 66.7
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 2.0e-175 619.8 493 65.1
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 2.6e-175 619.4 454 67.6
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 3.4e-175 619.0 447 68.0
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.0e-174 617.5 463 67.4
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 2.2e-174 616.3 432 71.8
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 2.5e-173 612.8 436 70.4
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.2e-172 610.5 425 70.6
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 4.7e-172 608.6 344 82.0
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 1.4e-171 607.1 428 69.6
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 3.0e-171 605.9 398 73.1
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 7.4e-170 601.3 467 64.2
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 4.8e-169 598.6 424 71.0
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 3.6e-164 582.4 453 63.1
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.7e-164 582.0 423 66.0
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 6.1e-164 581.6 422 68.0
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 8.8e-163 577.8 454 64.8
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 1.1e-162 577.4 424 68.4
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.3e-161 573.9 420 67.6
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 2.2e-161 573.2 463 63.3
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 2.2e-161 573.2 438 65.8
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.2e-159 567.4 423 65.5
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.2e-156 557.4 399 68.4
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 2.1e-156 556.6 386 69.7
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 2.7e-156 556.2 436 64.7
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 6.3e-153 545.0 421 62.5
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.4e-152 543.9 385 68.8
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 3.5e-151 539.3 404 65.1
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 1.5e-149 533.9 314 78.7
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 5.7e-146 521.9 322 75.2
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.3e-145 520.8 402 64.4
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 3.3e-141 506.1 379 66.8
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 2.8e-140 503.1 472 57.6
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 1.5e-133 480.7 227 98.7
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 4.0e-131 472.6 351 65.5
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 6.6e-126 455.3 293 72.7
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 2.6e-122 443.4 327 67.3
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 3.7e-121 439.5 341 63.3
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.3e-118 431.0 415 54.9
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 2.5e-117 426.8 455 51.0
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 9.2e-112 408.3 354 56.5
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.2e-111 407.9 448 52.7
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.3e-110 404.4 323 64.4
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 2.0e-106 390.6 324 55.2
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 3.2e-104 383.3 331 61.0
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 7.1e-104 382.1 314 60.5
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 3.9e-94 349.7 190 82.1
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 7.1e-88 328.9 432 44.0
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 8.4e-81 305.4 224 67.0
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 2.5e-77 293.9 259 57.9
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 2.5e-48 197.6 115 80.0
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 4.4e-45 186.8 261 47.9
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 9.7e-45 185.7 135 67.4
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 2.2e-44 184.5 225 50.7
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 2.7e-39 167.5 293 36.2
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 5.7e-29 133.3 164 53.0
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 1.3e-28 132.1 160 81.9
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 1.7e-28 131.7 77 77.9
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 4.1e-27 127.1 255 34.9
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.6e-26 125.2 79 73.4
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 1.6e-23 115.2 112 60.7
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 5.2e-22 110.2 205 37.1
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.1e-19 102.4 80 63.8
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.0e-13 81.6 52 65.4
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 8.6e-09 66.2 29 89.7
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 4.0e-06 57.4 28 89.3


User provided reference genes

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