Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51789 Brassica carinata HOM05D004823 ORTHO05D005814 3.4e-92 341.7 174 100.0
C01p09000 Brassica napus HOM05D004823 ORTHO05D005814 3.3e-39 165.6 94 90.4
BcaC07g41923 Brassica carinata HOM05D004823 ORTHO05D005814 3.4e-31 139.0 260 39.6
C08p49810 Brassica napus HOM05D004823 ORTHO05D005814 3.4e-31 139.0 260 39.6
Thhalv10006571m.g Eutrema salsugineum HOM05D004823 ORTHO05D005814 7.5e-31 137.9 260 39.2
A09p65740 Brassica napus HOM05D004823 ORTHO05D005814 9.8e-31 137.5 260 39.2
BraA09t41917Z Brassica rapa HOM05D004823 ORTHO05D005814 9.8e-31 137.5 260 39.2
AL1G19270 Arabidopsis lyrata HOM05D004823 ORTHO05D005814 1.7e-30 136.7 260 39.2
BolC8t52508H Brassica oleracea HOM05D004823 ORTHO05D005814 3.7e-30 135.6 260 39.2
AT1G08840 Arabidopsis thaliana HOM05D004823 ORTHO05D005814 6.3e-30 134.8 260 38.8
Sp1g07480 Schrenkiella parvula HOM05D004823 ORTHO05D005814 6.3e-30 134.8 235 41.3
CARHR008760 Cardamine hirsuta HOM05D004823 ORTHO05D005814 2.4e-29 132.9 260 38.5
Aa31sc17G210 Aethionema arabicum HOM05D004823 ORTHO05D005814 5.0e-27 125.2 260 36.2
BolC1t00891H Brassica oleracea HOM05D004823 ORTHO05D005814 1.1e-26 124.0 153 51.0
THA.LOC104808236 Tarenaya hassleriana HOM05D004823 ORTHO05D005814 3.0e-24 115.9 235 36.2
ClCG05G002760 Citrullus lanatus HOM05D004823 ORTHO05D005814 2.0e-20 103.2 192 34.9
unitig_8.g3844 Utricularia gibba HOM05D004823 ORTHO05D005814 1.9e-18 96.7 181 37.0
QL04p025376 Quercus lobata HOM05D004823 ORTHO05D005814 2.5e-18 96.3 233 30.9
Sc08g0006560 Simmondsia chinensis HOM05D004823 ORTHO05D005814 1.2e-17 94.0 235 28.9
Haze_02925 Corylus avellana HOM05D004823 ORTHO05D005814 2.1e-17 93.2 242 30.2
FAN03G0722 Fragaria x ananassa HOM05D004823 ORTHO05D005814 2.1e-17 93.2 260 28.8
PGR083G0266 Punica granatum HOM05D004823 ORTHO05D005814 2.8e-17 92.8 233 30.5
FvH4_7g08480 Fragaria vesca HOM05D004823 ORTHO05D005814 3.6e-17 92.4 235 30.2
FAN06G0930 Fragaria x ananassa HOM05D004823 ORTHO05D005814 3.6e-17 92.4 235 30.2
FAN10G0616 Fragaria x ananassa HOM05D004823 ORTHO05D005814 3.6e-17 92.4 235 30.2
FAN10G1986 Fragaria x ananassa HOM05D004823 ORTHO05D005814 3.6e-17 92.4 235 30.2
CANSAT21G1834 Cannabis sativa HOM05D004823 ORTHO05D005814 6.1e-17 91.7 226 30.5
CiPaw.14G012800 Carya illinoinensis HOM05D004823 ORTHO05D005814 6.1e-17 91.7 235 30.6
RcHm_v2.0_Chr1g0343241 Rosa chinensis HOM05D004823 ORTHO05D005814 6.1e-17 91.7 235 30.2
Ah.15g091500 Amaranthus hybridus HOM05D004823 ORTHO05D005814 8.0e-17 91.3 235 30.2
Glyma.06G310500 Glycine max HOM05D004823 ORTHO05D005814 8.0e-17 91.3 97 53.6
Lj7C553G7 Lonicera japonica HOM05D004823 ORTHO05D005814 8.0e-17 91.3 200 33.5
Hund17140 Selenicereus undatus HOM05D004823 ORTHO05D005814 1.0e-16 90.9 226 30.5
Atru.chr5.23 Acer truncatum HOM05D004823 ORTHO05D005814 1.4e-16 90.5 62 66.1
Atru.chr5.51 Acer truncatum HOM05D004823 ORTHO05D005814 1.4e-16 90.5 62 66.1
CSS0005414 Camellia sinensis var. sinensis HOM05D004823 ORTHO05D005814 1.4e-16 90.5 235 31.5
Actinidia33293 Actinidia chinensis HOM05D004823 ORTHO05D005814 1.8e-16 90.1 235 30.6
Lj1g0025017 Lotus japonicus HOM05D004823 ORTHO05D005814 1.8e-16 90.1 226 30.5
GSVIVG01018406001 Vitis vinifera HOM05D004823 ORTHO05D005814 1.8e-16 90.1 235 28.9
Cfa011006 Carpinus fangiana HOM05D004823 ORTHO05D005814 2.3e-16 89.7 235 30.2
AUR62013806 Chenopodium quinoa HOM05D004823 ORTHO05D005814 2.3e-16 89.7 235 29.4
Ca_04616_v3 Cicer arietinum L. HOM05D004823 ORTHO05D005814 2.3e-16 89.7 226 29.6
EL10Ac8g19253 Beta vulgaris HOM05D004823 ORTHO05D005814 3.0e-16 89.4 235 29.8
Sabra14G0140300 Salix brachista HOM05D004823 ORTHO05D005814 4.0e-16 89.0 233 29.2
Glyma.04G128350 Glycine max HOM05D004823 ORTHO05D005814 6.8e-16 88.2 97 52.6
Psat3g163800 Pisum sativum HOM05D004823 ORTHO05D005814 6.8e-16 88.2 226 30.5
Potri.014G180200 Populus trichocarpa HOM05D004823 ORTHO05D005814 6.8e-16 88.2 233 28.8
Dinv31197 Davidia involucrata HOM05D004823 ORTHO05D005814 8.9e-16 87.8 226 31.0
Nn1g00608 Nelumbo nucifera HOM05D004823 ORTHO05D005814 8.9e-16 87.8 62 67.7
Ciclev10018521m.g Citrus clementina HOM05D004823 ORTHO05D005814 1.2e-15 87.4 235 28.9
Medtr7g034575 Medicago truncatula HOM05D004823 ORTHO05D005814 1.2e-15 87.4 226 30.1
Phvul.005G016100 Phaseolus vulgaris HOM05D004823 ORTHO05D005814 1.2e-15 87.4 232 29.3
Prupe.2G112200 Prunus persica HOM05D004823 ORTHO05D005814 1.2e-15 87.4 235 29.4
TPR.G14862 Trifolium pratense HOM05D004823 ORTHO05D005814 1.2e-15 87.4 226 28.8
TWI23G0233 Tripterygium wilfordii HOM05D004823 ORTHO05D005814 1.5e-15 87.0 233 28.8
CsaV3_3G010270 Cucumis sativus L. HOM05D004823 ORTHO05D005814 2.0e-15 86.7 238 28.2
Manes.05G060200 Manihot esculenta HOM05D004823 ORTHO05D005814 2.0e-15 86.7 236 28.4
PSO782G4318 Papaver somniferum HOM05D004823 ORTHO05D005814 2.0e-15 86.7 234 28.2
AUR62023352 Chenopodium quinoa HOM05D004823 ORTHO05D005814 2.6e-15 86.3 235 28.5
Oeu034864.1 Olea europaea HOM05D004823 ORTHO05D005814 3.4e-15 85.9 226 30.1
Aqoxy5G01066 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 4.4e-15 85.5 234 28.2
Aqoxy7G00646 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 4.4e-15 85.5 234 28.2
PSO063G2621 Papaver somniferum HOM05D004823 ORTHO05D005814 4.4e-15 85.5 234 28.2
vmacro21094 Vaccinium macrocarpon HOM05D004823 ORTHO05D005814 4.4e-15 85.5 226 31.9
arahy.Tifrunner.gnm1.ann1.61K3Y7 Arachis hypogaea HOM05D004823 ORTHO05D005814 5.8e-15 85.1 226 29.6
Lalb_Chr03g0040711 Lupinus albus HOM05D004823 ORTHO05D005814 7.5e-15 84.7 226 29.6
Peaxi162Scf00417g00039 Petunia axillaris HOM05D004823 ORTHO05D005814 9.8e-15 84.3 62 69.4
arahy.Tifrunner.gnm1.ann1.GG1KFP Arachis hypogaea HOM05D004823 ORTHO05D005814 1.3e-14 84.0 226 29.2
Gohir.D04G072675 Gossypium hirsutum HOM05D004823 ORTHO05D005814 1.3e-14 84.0 235 30.6
Gorai.012G081700 Gossypium raimondii HOM05D004823 ORTHO05D005814 1.3e-14 84.0 235 30.6
TAR375G0889 Trochodendron aralioides HOM05D004823 ORTHO05D005814 1.3e-14 84.0 233 27.9
VMungo1080G1086 Vigna mungo HOM05D004823 ORTHO05D005814 1.3e-14 84.0 236 28.4
MELO3C006248.2 Cucumis melo HOM05D004823 ORTHO05D005814 2.2e-14 83.2 224 32.1
SGA_v2.0_scaffold578G53026 Striga asiatica HOM05D004823 ORTHO05D005814 2.2e-14 83.2 195 32.8
Thecc.10G001100 Theobroma cacao HOM05D004823 ORTHO05D005814 2.2e-14 83.2 236 29.2
Peaxi162Scf01124g00124 Petunia axillaris HOM05D004823 ORTHO05D005814 2.9e-14 82.8 62 67.7
Gohir.A05G333800 Gossypium hirsutum HOM05D004823 ORTHO05D005814 3.7e-14 82.4 235 30.2
Solyc01g088380.3 Solanum lycopersicum HOM05D004823 ORTHO05D005814 3.7e-14 82.4 227 30.8
Sopen01g035210 Solanum pennellii HOM05D004823 ORTHO05D005814 3.7e-14 82.4 227 30.8
CAN.G1480.3 Capsicum annuum HOM05D004823 ORTHO05D005814 4.9e-14 82.0 62 67.7
Sed0025177 Sechium edule HOM05D004823 ORTHO05D005814 4.9e-14 82.0 238 27.7
COL.COLO4_19317 Corchorus olitorius HOM05D004823 ORTHO05D005814 6.4e-14 81.6 235 28.9
Duzib106G1753 Durio zibethinus HOM05D004823 ORTHO05D005814 6.4e-14 81.6 236 29.2
Lsat_1_v5_gn_4_44681 Lactuca sativa HOM05D004823 ORTHO05D005814 6.4e-14 81.6 201 31.3
Eucgr.D01139 Eucalyptus grandis HOM05D004823 ORTHO05D005814 8.3e-14 81.3 225 28.9
Hma1.2p1_0601F.1_g187180 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 8.3e-14 81.3 62 61.3
Nitab4.5_0006227g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 1.1e-13 80.9 227 29.5
Nitab4.5_0007244g0010 Nicotiana tabacum HOM05D004823 ORTHO05D005814 1.1e-13 80.9 62 66.1
Cc00_g16960 Coffea canephora HOM05D004823 ORTHO05D005814 1.4e-13 80.5 62 61.3
Carub.0001s0819 Capsella rubella HOM05D004823 ORTHO05D005814 1.8e-13 80.1 72 59.7
DCAR_029534 Daucus carota HOM05D004823 ORTHO05D005814 2.4e-13 79.7 226 29.2
Rhsim01G0145100 Rhododendron simsii HOM05D004823 ORTHO05D005814 7.0e-13 78.2 62 61.3
Migut.B01471 Erythranthe guttata HOM05D004823 ORTHO05D005814 2.7e-12 76.3 227 27.3
MD07G1085900 Malus domestica HOM05D004823 ORTHO05D005814 3.5e-12 75.9 226 28.3
ATR0705G006 Amborella trichopoda HOM05D004823 ORTHO05D005814 2.3e-11 73.2 59 61.0
HanXRQChr08g0226321 Helianthus annuus HOM05D004823 ORTHO05D005814 2.3e-11 73.2 226 27.0
Os04g0588200 Oryza sativa ssp. japonica HOM05D004823 ORTHO05D005814 5.0e-11 72.0 71 52.1
HPP92_003324 Vanilla planifolia HOM05D004823 ORTHO05D005814 8.6e-11 71.2 227 27.8
SHI13670 Sapria himalayana HOM05D004823 ORTHO05D005814 1.5e-10 70.5 63 55.6
SEGI_04112 Sequoiadendron giganteum HOM05D004823 ORTHO05D005814 4.3e-10 68.9 63 57.1
ECA234G1924 Erigeron canadensis HOM05D004823 ORTHO05D005814 5.6e-10 68.6 62 56.5
CDE11G0321 Ceratophyllum demersum HOM05D004823 ORTHO05D005814 1.6e-09 67.0 62 48.4
SHI13671 Sapria himalayana HOM05D004823 ORTHO05D005814 2.0e-07 60.1 38 71.1
SEGI_26005 Sequoiadendron giganteum HOM05D004823 ORTHO05D005814 4.4e-07 58.9 72 43.1


User provided reference genes

Program Settings