Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 1.1e-266 922.9 529 100.0
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 3.0e-248 861.7 535 93.1
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.5e-239 832.8 544 90.3
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 9.6e-239 830.1 531 89.3
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 1.4e-237 826.2 537 89.0
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 6.9e-237 823.9 538 87.9
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 5.5e-234 814.3 540 85.9
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 4.5e-228 794.7 425 91.3
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 2.9e-227 792.0 535 84.1
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 2.9e-227 792.0 540 85.2
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.4e-226 789.6 539 82.7
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 5.5e-226 787.7 535 84.3
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 6.0e-225 784.3 541 84.3
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 4.3e-223 778.1 540 83.0
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 4.8e-222 774.6 442 87.6
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 3.1e-221 771.9 442 87.3
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 7.9e-217 757.3 403 94.8
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.8e-213 746.1 443 84.2
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 9.4e-202 707.2 453 76.8
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 1.3e-179 633.6 438 70.1
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 1.5e-178 630.2 435 71.5
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.5e-178 630.2 422 73.2
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 3.2e-178 629.0 426 71.8
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 5.5e-178 628.2 421 73.2
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 2.1e-177 626.3 425 71.8
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 2.8e-177 625.9 425 72.5
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 4.7e-177 625.2 435 71.0
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 8.0e-177 624.4 435 70.6
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.0e-176 624.0 425 71.5
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 1.0e-176 624.0 418 73.4
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.4e-176 623.6 423 72.3
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 1.4e-176 623.6 441 68.5
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.4e-176 623.6 435 71.3
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.8e-176 623.2 447 70.0
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 1.8e-176 623.2 444 70.7
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 4.0e-176 622.1 423 71.6
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 6.8e-176 621.3 431 70.8
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 6.8e-176 621.3 419 72.8
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 2.0e-175 619.8 430 70.7
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 2.6e-175 619.4 429 71.3
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 3.4e-175 619.0 437 69.3
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 4.4e-175 618.6 441 68.0
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 4.4e-175 618.6 441 68.0
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 5.7e-175 618.2 436 69.7
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 5.7e-175 618.2 423 72.3
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 7.5e-175 617.8 430 70.0
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.7e-174 616.7 422 71.3
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 2.2e-174 616.3 436 70.4
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.7e-174 615.5 419 72.3
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 2.4e-173 612.8 437 68.2
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 4.1e-173 612.1 424 70.0
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 7.0e-173 611.3 422 71.6
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 7.0e-173 611.3 443 68.2
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.6e-172 610.1 439 69.2
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.6e-172 610.1 439 69.2
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 1.6e-172 610.1 420 71.2
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 2.0e-172 609.8 420 70.0
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 2.7e-172 609.4 466 66.1
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 4.5e-172 608.6 437 69.3
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 4.5e-172 608.6 420 71.0
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 5.9e-172 608.2 423 70.7
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 2.3e-171 606.3 425 69.2
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 2.3e-171 606.3 418 71.3
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 6.6e-171 604.7 433 69.3
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 8.6e-171 604.4 430 70.0
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 2.5e-170 602.8 425 70.1
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 7.3e-170 601.3 427 68.9
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 9.5e-170 600.9 434 70.5
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.2e-169 600.5 421 69.8
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 3.6e-169 599.0 428 69.4
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 1.4e-168 597.0 428 69.2
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.3e-168 596.3 419 71.6
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 4.0e-168 595.5 425 67.8
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 8.9e-168 594.3 426 71.1
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 1.5e-167 593.6 431 69.1
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 2.0e-167 593.2 427 69.6
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 9.8e-167 590.9 425 68.9
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.3e-166 590.5 438 66.2
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 4.9e-166 588.6 429 69.7
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.4e-165 587.0 461 64.9
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 5.4e-165 585.1 437 67.7
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 9.2e-165 584.3 410 68.8
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.0e-163 579.3 344 79.4
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 3.9e-163 578.9 459 64.7
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 4.3e-162 575.5 476 62.4
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 2.1e-161 573.2 398 70.1
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 8.9e-160 567.8 461 61.8
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 2.6e-159 566.2 418 67.7
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 4.4e-159 565.5 452 63.9
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 2.2e-158 563.1 434 67.3
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 5.4e-157 558.5 435 64.6
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 3.9e-155 552.4 424 67.7
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 9.5e-154 547.7 452 62.2
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 9.5e-154 547.7 420 64.3
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.1e-152 544.3 418 65.3
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 4.9e-150 535.4 386 67.9
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 3.2e-149 532.7 420 63.8
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 7.1e-149 531.6 438 62.1
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.0e-147 527.7 398 66.8
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 5.1e-147 525.4 313 78.3
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.5e-146 523.1 427 60.4
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 2.9e-142 509.6 390 65.9
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 4.1e-141 505.8 400 62.2
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.6e-137 493.8 322 72.7
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 5.8e-135 485.3 398 60.8
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 1.6e-132 477.2 384 62.8
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 3.5e-132 476.1 224 99.1
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 7.8e-132 474.9 460 56.1
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.3e-121 441.0 344 63.1
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 6.4e-118 428.7 293 70.0
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.6e-113 414.1 412 55.1
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 1.6e-113 414.1 325 64.6
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 2.1e-113 413.7 355 59.4
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 4.2e-109 399.4 455 50.5
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 3.9e-107 392.9 312 67.0
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.8e-105 386.7 446 53.4
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 2.0e-103 380.6 354 54.0
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 7.4e-98 362.1 324 52.5
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 1.3e-97 361.3 329 58.1
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 9.4e-93 345.1 190 81.6
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.2e-92 344.7 310 56.5
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 6.3e-81 305.8 434 41.9
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 2.8e-73 280.4 224 63.4
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 8.5e-70 268.9 259 55.2
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 3.2e-48 197.2 115 80.0
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 1.2e-44 185.3 135 67.4
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 2.0e-42 177.9 177 59.3
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 2.3e-38 164.5 272 41.9
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 2.6e-34 151.0 294 33.7
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 6.6e-30 136.3 116 62.9
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 2.9e-25 120.9 79 72.2
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 6.4e-25 119.8 147 81.6
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 2.3e-22 111.3 113 55.8
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 1.1e-21 109.0 77 67.5
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 9.6e-21 105.9 255 32.2
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.5e-18 98.6 79 63.3
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 5.8e-18 96.7 198 35.9
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 8.4e-09 66.2 29 89.7
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 9.3e-08 62.8 52 53.8
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 3.9e-06 57.4 28 89.3
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 6.7e-06 56.6 66 47.0


User provided reference genes

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