Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49432 Brassica carinata HOM05D004387 ORTHO05D005218 2.7e-80 302.0 158 100.0
C01p36790 Brassica napus HOM05D004387 ORTHO05D005218 8.2e-69 263.8 153 93.5
BolC1t03637H Brassica oleracea HOM05D004387 ORTHO05D005218 8.2e-69 263.8 153 93.5
BcaB07g31201 Brassica carinata HOM05D004387 ORTHO05D005218 1.8e-60 236.1 158 82.9
BcaC04g22217 Brassica carinata HOM05D004387 ORTHO05D005218 7.0e-60 234.2 158 82.3
BraA09t37397Z Brassica rapa HOM05D004387 ORTHO05D005218 7.0e-60 234.2 158 82.3
BNapus_Darmor_BZH_scaffold_155p00060 Brassica napus HOM05D004387 ORTHO05D005218 9.1e-60 233.8 158 82.3
C09p22030 Brassica napus HOM05D004387 ORTHO05D005218 9.1e-60 233.8 158 82.3
BolC9t55109H Brassica oleracea HOM05D004387 ORTHO05D005218 9.1e-60 233.8 158 82.3
A09p17690 Brassica napus HOM05D004387 ORTHO05D005218 2.6e-59 232.3 158 81.6
Sp2g04520 Schrenkiella parvula HOM05D004387 ORTHO05D005218 1.7e-58 229.6 161 81.4
Thhalv10023611m.g Eutrema salsugineum HOM05D004387 ORTHO05D005218 4.7e-56 221.5 159 78.6
AT1G60080 Arabidopsis thaliana HOM05D004387 ORTHO05D005218 4.8e-53 211.5 159 76.1
AL2G16570 Arabidopsis lyrata HOM05D004387 ORTHO05D005218 1.4e-52 209.9 159 76.1
CARHR052860 Cardamine hirsuta HOM05D004387 ORTHO05D005218 2.4e-52 209.1 162 74.1
Carub.0002s0514 Capsella rubella HOM05D004387 ORTHO05D005218 3.8e-50 201.8 159 73.0
Aa31LG2G10160 Aethionema arabicum HOM05D004387 ORTHO05D005218 1.1e-49 200.3 158 72.8
THA.LOC104823663 Tarenaya hassleriana HOM05D004387 ORTHO05D005218 5.0e-42 174.9 161 65.2
Migut.K00090 Erythranthe guttata HOM05D004387 ORTHO05D005218 4.0e-39 165.2 162 61.1
Sed0012804 Sechium edule HOM05D004387 ORTHO05D005218 8.8e-39 164.1 162 61.1
Manes.08G050500 Manihot esculenta HOM05D004387 ORTHO05D005218 1.2e-38 163.7 162 61.1
MELO3C023136.2 Cucumis melo HOM05D004387 ORTHO05D005218 2.0e-38 162.9 162 59.3
Oeu017945.1 Olea europaea HOM05D004387 ORTHO05D005218 2.0e-38 162.9 165 60.0
CSS0003189 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 4.4e-38 161.8 162 61.1
CANSAT21G1698 Cannabis sativa HOM05D004387 ORTHO05D005218 4.4e-38 161.8 162 58.0
Hma1.2p1_0953F.1_g241060 Hydrangea macrophylla HOM05D004387 ORTHO05D005218 4.4e-38 161.8 162 61.1
Cc07_g20870 Coffea canephora HOM05D004387 ORTHO05D005218 5.7e-38 161.4 162 61.1
Rhsim09G0155500 Rhododendron simsii HOM05D004387 ORTHO05D005218 7.5e-38 161.0 162 59.9
Lalb_Chr01g0017301 Lupinus albus HOM05D004387 ORTHO05D005218 1.3e-37 160.2 158 58.9
Potri.006G051200 Populus trichocarpa HOM05D004387 ORTHO05D005218 1.3e-37 160.2 162 59.9
GSVIVG01033276001 Vitis vinifera HOM05D004387 ORTHO05D005218 1.3e-37 160.2 162 59.3
QL02p103266 Quercus lobata HOM05D004387 ORTHO05D005218 1.7e-37 159.8 161 59.6
MBI11_g09466_MAGBIO Magnolia biondii HOM05D004387 ORTHO05D005218 2.2e-37 159.5 162 56.8
Potri.016G055600 Populus trichocarpa HOM05D004387 ORTHO05D005218 2.2e-37 159.5 151 62.3
TAR633G2397 Trochodendron aralioides HOM05D004387 ORTHO05D005218 2.2e-37 159.5 162 59.3
Cc06_g17110 Coffea canephora HOM05D004387 ORTHO05D005218 3.7e-37 158.7 162 61.1
Thecc.05G153400 Theobroma cacao HOM05D004387 ORTHO05D005218 3.7e-37 158.7 162 58.0
CsaV3_4G011700 Cucumis sativus L. HOM05D004387 ORTHO05D005218 4.9e-37 158.3 162 58.0
Sabra06G0035900 Salix brachista HOM05D004387 ORTHO05D005218 4.9e-37 158.3 162 60.5
Duzib093G1767 Durio zibethinus HOM05D004387 ORTHO05D005218 8.3e-37 157.5 162 57.4
Actinidia17236 Actinidia chinensis HOM05D004387 ORTHO05D005218 1.1e-36 157.1 162 59.3
Dinv12482 Davidia involucrata HOM05D004387 ORTHO05D005218 1.1e-36 157.1 162 59.3
Lalb_Chr20g0110501 Lupinus albus HOM05D004387 ORTHO05D005218 1.4e-36 156.8 155 58.1
RcHm_v2.0_Chr3g0482341 Rosa chinensis HOM05D004387 ORTHO05D005218 1.8e-36 156.4 162 59.9
MSTRG.10813 Avicennia marina HOM05D004387 ORTHO05D005218 2.4e-36 156.0 162 58.6
Cpa.g.sc3.336 Carica papaya HOM05D004387 ORTHO05D005218 2.4e-36 156.0 162 55.6
Lsat_1_v5_gn_5_161440 Lactuca sativa HOM05D004387 ORTHO05D005218 2.4e-36 156.0 162 57.4
Prupe.7G061000 Prunus persica HOM05D004387 ORTHO05D005218 2.4e-36 156.0 162 58.0
Dinv39602 Davidia involucrata HOM05D004387 ORTHO05D005218 3.1e-36 155.6 162 60.5
TWI77G0383 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 3.1e-36 155.6 162 58.6
COL.COLO4_28283 Corchorus olitorius HOM05D004387 ORTHO05D005218 4.1e-36 155.2 162 56.2
Gohir.A01G009000 Gossypium hirsutum HOM05D004387 ORTHO05D005218 4.1e-36 155.2 162 56.8
Aqoxy5G00267 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 5.4e-36 154.8 162 57.4
Gorai.002G116000 Gossypium raimondii HOM05D004387 ORTHO05D005218 5.4e-36 154.8 162 56.8
SGA_v2.0_scaffold273G46436 Striga asiatica HOM05D004387 ORTHO05D005218 5.4e-36 154.8 160 56.9
Gohir.A02G158900 Gossypium hirsutum HOM05D004387 ORTHO05D005218 7.0e-36 154.5 162 56.8
Sopen10g030740 Solanum pennellii HOM05D004387 ORTHO05D005218 7.0e-36 154.5 162 58.0
Ciclev10005512m.g Citrus clementina HOM05D004387 ORTHO05D005218 9.2e-36 154.1 162 59.9
FAN05G1657 Fragaria x ananassa HOM05D004387 ORTHO05D005218 9.2e-36 154.1 162 59.3
FAN02G2904 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.2e-35 153.7 162 58.6
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.6e-35 153.3 162 58.6
Gohir.D01G090600 Gossypium hirsutum HOM05D004387 ORTHO05D005218 2.7e-35 152.5 162 56.2
Lju124A41T49 Lonicera japonica HOM05D004387 ORTHO05D005218 2.7e-35 152.5 162 58.0
PGSC0003DMG400023725 Solanum tuberosum HOM05D004387 ORTHO05D005218 2.7e-35 152.5 162 56.8
FvH4_6g23810 Fragaria vesca HOM05D004387 ORTHO05D005218 3.5e-35 152.1 162 58.6
ECA248G3203 Erigeron canadensis HOM05D004387 ORTHO05D005218 4.5e-35 151.8 162 57.4
MD12G1073800 Malus domestica HOM05D004387 ORTHO05D005218 4.5e-35 151.8 162 58.6
Sc13g0001760 Simmondsia chinensis HOM05D004387 ORTHO05D005218 4.5e-35 151.8 162 55.6
TWI74G1664 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 4.5e-35 151.8 162 58.6
unitig_46.g18443 Utricularia gibba HOM05D004387 ORTHO05D005218 4.5e-35 151.8 153 56.2
CAN.G1001.5 Capsicum annuum HOM05D004387 ORTHO05D005218 5.9e-35 151.4 163 57.7
Cfa016818 Carpinus fangiana HOM05D004387 ORTHO05D005218 5.9e-35 151.4 162 55.6
Atru.chr1.1097 Acer truncatum HOM05D004387 ORTHO05D005218 7.7e-35 151.0 162 57.4
Eucgr.A00059 Eucalyptus grandis HOM05D004387 ORTHO05D005218 7.7e-35 151.0 162 57.4
HanXRQChr06g0178491 Helianthus annuus HOM05D004387 ORTHO05D005218 7.7e-35 151.0 163 57.1
HPP92_019752 Vanilla planifolia HOM05D004387 ORTHO05D005218 7.7e-35 151.0 165 53.3
Gohir.D01G008666 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.0e-34 150.6 164 56.7
Peaxi162Scf00354g00222 Petunia axillaris HOM05D004387 ORTHO05D005218 1.0e-34 150.6 162 58.0
Phvul.011G181200 Phaseolus vulgaris HOM05D004387 ORTHO05D005218 1.0e-34 150.6 151 57.6
Hund05284 Selenicereus undatus HOM05D004387 ORTHO05D005218 1.0e-34 150.6 162 57.4
DCAR_013603 Daucus carota HOM05D004387 ORTHO05D005218 1.3e-34 150.2 162 55.6
Glyma.08G246800 Glycine max HOM05D004387 ORTHO05D005218 1.7e-34 149.8 151 58.9
Eucgr.A00263 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.3e-34 149.4 162 56.8
Glyma.14G145600 Glycine max HOM05D004387 ORTHO05D005218 2.3e-34 149.4 151 58.9
Nitab4.5_0004587g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 2.3e-34 149.4 160 58.1
Nitab4.5_0009442g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 2.3e-34 149.4 160 57.5
SGA_v2.0_scaffold94G28486 Striga asiatica HOM05D004387 ORTHO05D005218 2.3e-34 149.4 162 54.3
CAN.G128.9 Capsicum annuum HOM05D004387 ORTHO05D005218 2.9e-34 149.1 162 58.6
FAN14G1242 Fragaria x ananassa HOM05D004387 ORTHO05D005218 2.9e-34 149.1 151 60.3
Psat6g037480 Pisum sativum HOM05D004387 ORTHO05D005218 2.9e-34 149.1 151 58.9
Aqoxy2G02875 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 3.8e-34 148.7 162 56.2
Solyc10g080130.3 Solanum lycopersicum HOM05D004387 ORTHO05D005218 5.0e-34 148.3 162 56.2
CiPaw.09G038200 Carya illinoinensis HOM05D004387 ORTHO05D005218 6.6e-34 147.9 162 54.9
Medtr1g007060 Medicago truncatula HOM05D004387 ORTHO05D005218 6.6e-34 147.9 151 57.6
Actinidia38546 Actinidia chinensis HOM05D004387 ORTHO05D005218 8.6e-34 147.5 133 64.7
arahy.Tifrunner.gnm1.ann1.QD816I Arachis hypogaea HOM05D004387 ORTHO05D005218 8.6e-34 147.5 153 56.2
arahy.Tifrunner.gnm1.ann1.02RJAW Arachis hypogaea HOM05D004387 ORTHO05D005218 1.1e-33 147.1 153 55.6
Ca_03365_v3 Cicer arietinum L. HOM05D004387 ORTHO05D005218 1.1e-33 147.1 151 57.6
Lj6g0019382 Lotus japonicus HOM05D004387 ORTHO05D005218 1.1e-33 147.1 151 57.0
Ah.13g076470 Amaranthus hybridus HOM05D004387 ORTHO05D005218 1.5e-33 146.7 162 56.8
Glyma.18G267600 Glycine max HOM05D004387 ORTHO05D005218 1.5e-33 146.7 151 57.0
VMungo0331G1303 Vigna mungo HOM05D004387 ORTHO05D005218 1.5e-33 146.7 151 56.3
Solyc06g075390.4 Solanum lycopersicum HOM05D004387 ORTHO05D005218 1.9e-33 146.4 161 55.9
Cfa006454 Carpinus fangiana HOM05D004387 ORTHO05D005218 2.5e-33 146.0 127 63.8
Os11g0311300 Oryza sativa ssp. japonica HOM05D004387 ORTHO05D005218 2.5e-33 146.0 164 49.4
PSO170G6628 Papaver somniferum HOM05D004387 ORTHO05D005218 4.3e-33 145.2 163 55.2
PSO357G0544 Papaver somniferum HOM05D004387 ORTHO05D005218 4.3e-33 145.2 163 54.6
PGR142G2016 Punica granatum HOM05D004387 ORTHO05D005218 5.6e-33 144.8 162 53.7
Lj4g0008518 Lotus japonicus HOM05D004387 ORTHO05D005218 7.3e-33 144.4 151 55.6
PGSC0003DMG400007507 Solanum tuberosum HOM05D004387 ORTHO05D005218 1.2e-32 143.7 163 55.2
TPR.G24500 Trifolium pratense HOM05D004387 ORTHO05D005218 1.2e-32 143.7 151 57.0
HanXRQChr01g0008751 Helianthus annuus HOM05D004387 ORTHO05D005218 1.6e-32 143.3 166 54.8
Sopen06g031800 Solanum pennellii HOM05D004387 ORTHO05D005218 1.6e-32 143.3 162 54.9
Gorai.002G010400 Gossypium raimondii HOM05D004387 ORTHO05D005218 3.6e-32 142.1 126 63.5
AUR62024448 Chenopodium quinoa HOM05D004387 ORTHO05D005218 4.0e-31 138.7 127 63.8
CDE04G2438 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 1.5e-30 136.7 129 55.8
CSS0010572 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 3.4e-30 135.6 153 54.2
ClCG04G000120 Citrullus lanatus HOM05D004387 ORTHO05D005218 9.8e-30 134.0 135 59.3
Zm00001eb175450 Zea mays HOM05D004387 ORTHO05D005218 1.7e-29 133.3 164 46.3
EL10Ac3g07090 Beta vulgaris HOM05D004387 ORTHO05D005218 6.4e-29 131.3 152 53.9
Haze_19856 Corylus avellana HOM05D004387 ORTHO05D005218 1.4e-28 130.2 150 53.3
Eucgr.A00069 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.4e-28 129.4 162 53.1
ATR0626G351 Amborella trichopoda HOM05D004387 ORTHO05D005218 7.0e-28 127.9 161 49.1
vmacro09074 Vaccinium macrocarpon HOM05D004387 ORTHO05D005218 5.0e-26 121.7 248 38.7
Mapoly0071s0030 Marchantia polymorpha HOM05D004387 ORTHO05D005218 7.3e-25 117.9 163 44.8
AUR62026038 Chenopodium quinoa HOM05D004387 ORTHO05D005218 9.5e-25 117.5 102 65.7
CSS0046204 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.8e-23 113.2 102 61.8
CSS0027602 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 3.4e-22 109.0 128 53.9
CSS0026699 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 9.8e-22 107.5 121 52.9
Pp3c19_14820 Physcomitrium patens HOM05D004387 ORTHO05D005218 9.8e-22 107.5 162 36.4
Eucgr.A00266 Eucalyptus grandis HOM05D004387 ORTHO05D005218 3.7e-21 105.5 143 48.3
CSS0024704 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 8.3e-21 104.4 132 49.2
SEGI_27972 Sequoiadendron giganteum HOM05D004387 ORTHO05D005218 3.5e-19 99.0 139 43.9
SMO169G0201 Selaginella moellendorffii HOM05D004387 ORTHO05D005218 1.1e-17 94.0 153 35.9
EL10Ac3g05398 Beta vulgaris HOM05D004387 ORTHO05D005218 2.5e-17 92.8 83 63.9
Nn2g15223 Nelumbo nucifera HOM05D004387 ORTHO05D005218 2.5e-17 92.8 162 41.4
AagrBONN_evm.TU.Sc2ySwM_362.2801 Anthoceros agrestis HOM05D004387 ORTHO05D005218 1.5e-14 83.6 139 38.8
Eucgr.A00265 Eucalyptus grandis HOM05D004387 ORTHO05D005218 4.6e-11 72.0 70 58.6
Cre10.g440900 Chlamydomonas reinhardtii HOM05D004387 ORTHO05D005218 4.3e-09 65.5 166 31.3
CBR_g20981 Chara braunii HOM05D004387 ORTHO05D005218 7.3e-09 64.7 246 25.6
Zm00001eb036840 Zea mays HOM05D004387 ORTHO05D005218 7.3e-09 64.7 182 30.2
MCO07G362 Micromonas commoda HOM05D004387 ORTHO05D005218 2.8e-08 62.8 125 32.8
Nitab4.5_0005483g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 2.8e-08 62.8 162 34.0
Eucgr.A00267 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.1e-07 60.8 147 36.1
Eucgr.A00063 Eucalyptus grandis HOM05D004387 ORTHO05D005218 6.8e-07 58.2 109 44.0


User provided reference genes

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