Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44523 Brassica carinata HOM05D003441 ORTHO05D004516 2.4e-195 685.3 339 100.0
C06p19750 Brassica napus HOM05D003441 ORTHO05D004516 4.2e-187 657.9 347 95.7
BraA07t29768Z Brassica rapa HOM05D003441 ORTHO05D004516 4.5e-181 637.9 349 93.4
A07p20760 Brassica napus HOM05D003441 ORTHO05D004516 6.5e-180 634.0 350 93.1
BcaB02g07896 Brassica carinata HOM05D003441 ORTHO05D004516 1.9e-179 632.5 348 91.4
BcaB06g27616 Brassica carinata HOM05D003441 ORTHO05D004516 5.1e-177 624.4 352 90.3
A04p14500 Brassica napus HOM05D003441 ORTHO05D004516 1.5e-176 622.9 352 90.3
BraA04t17095Z Brassica rapa HOM05D003441 ORTHO05D004516 1.5e-176 622.9 352 90.3
C04p48400 Brassica napus HOM05D003441 ORTHO05D004516 9.7e-176 620.2 352 89.8
BolC4t26434H Brassica oleracea HOM05D003441 ORTHO05D004516 9.7e-176 620.2 352 89.8
Sp7g00580 Schrenkiella parvula HOM05D003441 ORTHO05D004516 8.2e-175 617.1 352 89.2
SpUn0010_0060 Schrenkiella parvula HOM05D003441 ORTHO05D004516 8.2e-175 617.1 352 89.2
BcaC02g08964 Brassica carinata HOM05D003441 ORTHO05D004516 1.1e-174 616.7 352 89.8
Thhalv10027651m.g Eutrema salsugineum HOM05D003441 ORTHO05D004516 2.5e-171 605.5 353 87.5
AL7G48050 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 1.5e-165 586.3 352 85.8
CARHR212960 Cardamine hirsuta HOM05D003441 ORTHO05D004516 2.6e-165 585.5 352 86.1
AL7G48070 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 5.9e-165 584.3 352 85.5
AT5G41370 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 1.7e-164 582.8 352 84.7
AT5G41360 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 6.5e-164 580.9 352 84.9
Carub.0007s3411 Capsella rubella HOM05D003441 ORTHO05D004516 1.9e-163 579.3 352 85.5
THA.LOC104817891 Tarenaya hassleriana HOM05D003441 ORTHO05D004516 4.2e-163 578.2 353 83.9
Carub.0007s3412 Capsella rubella HOM05D003441 ORTHO05D004516 9.7e-160 567.0 353 83.0
Aa31LG5G13590 Aethionema arabicum HOM05D003441 ORTHO05D004516 1.3e-159 566.6 353 83.6
COL.COLO4_34498 Corchorus olitorius HOM05D003441 ORTHO05D004516 9.4e-155 550.4 326 85.6
Duzib205G0291 Durio zibethinus HOM05D003441 ORTHO05D004516 6.1e-154 547.7 331 83.7
Thecc.03G282800 Theobroma cacao HOM05D003441 ORTHO05D004516 6.1e-154 547.7 329 84.8
Gorai.007G023800 Gossypium raimondii HOM05D003441 ORTHO05D004516 1.4e-153 546.6 329 84.5
Gohir.A11G022800 Gossypium hirsutum HOM05D003441 ORTHO05D004516 1.2e-152 543.5 332 83.7
Duzib084G0223 Durio zibethinus HOM05D003441 ORTHO05D004516 1.3e-151 540.0 329 83.9
Cpa.g.sc180.13 Carica papaya HOM05D003441 ORTHO05D004516 1.7e-151 539.7 338 80.5
Prupe.5G104000 Prunus persica HOM05D003441 ORTHO05D004516 3.7e-151 538.5 349 78.2
PGR042G0359 Punica granatum HOM05D003441 ORTHO05D004516 3.7e-151 538.5 324 82.7
CSS0029160 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 1.8e-150 536.2 337 81.0
CSS0043381 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 1.8e-150 536.2 337 81.0
Dinv37619 Davidia involucrata HOM05D003441 ORTHO05D004516 1.8e-150 536.2 325 83.4
Gohir.D03G149600 Gossypium hirsutum HOM05D003441 ORTHO05D004516 1.8e-150 536.2 323 84.2
Gorai.003G156900 Gossypium raimondii HOM05D003441 ORTHO05D004516 1.8e-150 536.2 323 84.2
Manes.02G021700 Manihot esculenta HOM05D003441 ORTHO05D004516 1.8e-150 536.2 339 79.4
Nn6g33339 Nelumbo nucifera HOM05D003441 ORTHO05D004516 2.4e-150 535.8 337 79.8
MSTRG.11971 Avicennia marina HOM05D003441 ORTHO05D004516 3.1e-150 535.4 327 82.0
Eucgr.E00638 Eucalyptus grandis HOM05D003441 ORTHO05D004516 4.1e-150 535.0 328 82.9
ECA246G2088 Erigeron canadensis HOM05D003441 ORTHO05D004516 3.5e-149 531.9 337 79.8
Sc07g0009820 Simmondsia chinensis HOM05D003441 ORTHO05D004516 3.5e-149 531.9 323 83.0
Lj8A218G25 Lonicera japonica HOM05D003441 ORTHO05D004516 4.5e-149 531.6 331 81.6
Hund10975 Selenicereus undatus HOM05D003441 ORTHO05D004516 4.5e-149 531.6 339 80.2
QL12p032410 Quercus lobata HOM05D003441 ORTHO05D004516 7.7e-149 530.8 342 79.5
Atru.chr9.2153 Acer truncatum HOM05D003441 ORTHO05D004516 1.3e-148 530.0 342 79.2
Ah.12g058870 Amaranthus hybridus HOM05D003441 ORTHO05D004516 1.3e-148 530.0 332 80.4
CANSAT25G0732 Cannabis sativa HOM05D003441 ORTHO05D004516 1.7e-148 529.6 338 79.6
TWI15G1203 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 5.0e-148 528.1 340 80.9
Solyc08g081340.4 Solanum lycopersicum HOM05D003441 ORTHO05D004516 8.5e-148 527.3 337 80.1
Sopen08g029660 Solanum pennellii HOM05D003441 ORTHO05D004516 8.5e-148 527.3 337 80.1
VMungo0251G2080 Vigna mungo HOM05D003441 ORTHO05D004516 8.5e-148 527.3 336 79.8
SalBow1G4213 Salvia bowleyana HOM05D003441 ORTHO05D004516 1.5e-147 526.6 325 81.2
HanXRQChr17g0533461 Helianthus annuus HOM05D003441 ORTHO05D004516 1.9e-147 526.2 330 79.1
Lj4g0015025 Lotus japonicus HOM05D003441 ORTHO05D004516 1.9e-147 526.2 333 79.6
RcHm_v2.0_Chr7g0197061 Rosa chinensis HOM05D003441 ORTHO05D004516 1.9e-147 526.2 340 79.1
HPP92_021979 Vanilla planifolia HOM05D003441 ORTHO05D004516 1.9e-147 526.2 349 77.7
ATR0661G194 Amborella trichopoda HOM05D003441 ORTHO05D004516 2.5e-147 525.8 325 82.2
Sed0019074 Sechium edule HOM05D003441 ORTHO05D004516 2.5e-147 525.8 338 78.4
TWI15G1061 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 2.5e-147 525.8 340 79.7
TAR636G0201 Trochodendron aralioides HOM05D003441 ORTHO05D004516 2.5e-147 525.8 334 80.2
FvH4_5g02840 Fragaria vesca HOM05D003441 ORTHO05D004516 3.2e-147 525.4 340 79.4
Phvul.002G291500 Phaseolus vulgaris HOM05D003441 ORTHO05D004516 7.2e-147 524.2 343 77.6
AUR62030470 Chenopodium quinoa HOM05D003441 ORTHO05D004516 9.4e-147 523.9 330 80.3
AUR62010445 Chenopodium quinoa HOM05D003441 ORTHO05D004516 1.2e-146 523.5 330 80.3
arahy.Tifrunner.gnm1.ann1.5RI6ER Arachis hypogaea HOM05D003441 ORTHO05D004516 2.1e-146 522.7 313 83.4
Lalb_Chr16g0390181 Lupinus albus HOM05D003441 ORTHO05D004516 2.1e-146 522.7 341 78.0
Haze_08814 Corylus avellana HOM05D003441 ORTHO05D004516 2.7e-146 522.3 351 76.4
MELO3C005694.2 Cucumis melo HOM05D003441 ORTHO05D004516 4.7e-146 521.5 343 77.3
Glyma.08G016400 Glycine max HOM05D003441 ORTHO05D004516 6.1e-146 521.2 324 81.2
HanXRQChr06g0165951 Helianthus annuus HOM05D003441 ORTHO05D004516 6.1e-146 521.2 324 80.9
Potri.001G101300 Populus trichocarpa HOM05D003441 ORTHO05D004516 8.0e-146 520.8 328 81.4
EL10Ac5g12531 Beta vulgaris HOM05D003441 ORTHO05D004516 1.0e-145 520.4 320 82.2
Glyma.05G209700 Glycine max HOM05D003441 ORTHO05D004516 1.0e-145 520.4 324 80.9
Lalb_Chr05g0224631 Lupinus albus HOM05D003441 ORTHO05D004516 1.0e-145 520.4 348 77.3
Ca_10937_v3 Cicer arietinum L. HOM05D003441 ORTHO05D004516 1.4e-145 520.0 332 79.8
SalBow1G5824 Salvia bowleyana HOM05D003441 ORTHO05D004516 2.3e-145 519.2 336 78.6
Psat7g031680 Pisum sativum HOM05D003441 ORTHO05D004516 3.0e-145 518.8 323 81.1
CsaV3_5G002620 Cucumis sativus L. HOM05D003441 ORTHO05D004516 4.0e-145 518.5 343 76.7
Medtr8g098675 Medicago truncatula HOM05D003441 ORTHO05D004516 5.2e-145 518.1 323 81.1
TWI81G0502 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 1.5e-144 516.5 337 79.2
Actinidia28364 Actinidia chinensis HOM05D003441 ORTHO05D004516 2.6e-144 515.8 325 81.2
Aqoxy1G00680 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 5.7e-144 514.6 324 80.9
RcHm_v2.0_Chr1g0341861 Rosa chinensis HOM05D003441 ORTHO05D004516 7.5e-144 514.2 355 74.6
MD06G1087900 Malus domestica HOM05D003441 ORTHO05D004516 9.8e-144 513.8 338 79.3
Migut.E01191 Erythranthe guttata HOM05D003441 ORTHO05D004516 8.3e-143 510.8 317 80.8
Rhsim02G0234100 Rhododendron simsii HOM05D003441 ORTHO05D004516 1.1e-142 510.4 403 68.5
arahy.Tifrunner.gnm1.ann1.75Q964 Arachis hypogaea HOM05D003441 ORTHO05D004516 2.4e-142 509.2 337 77.4
Nitab4.5_0001220g0100 Nicotiana tabacum HOM05D003441 ORTHO05D004516 7.0e-142 507.7 337 78.0
Os01g0691600 Oryza sativa ssp. japonica HOM05D003441 ORTHO05D004516 7.0e-142 507.7 323 78.6
CiPaw.12G091100 Carya illinoinensis HOM05D003441 ORTHO05D004516 2.0e-141 506.1 356 74.2
RcHm_v2.0_Chr1g0341621 Rosa chinensis HOM05D003441 ORTHO05D004516 3.5e-141 505.4 343 75.5
Zm00001eb156220 Zea mays HOM05D003441 ORTHO05D004516 1.3e-140 503.4 339 75.5
MBI04_g41820_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 1.7e-140 503.1 332 78.6
FAN18G3267 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.8e-140 501.9 340 77.4
FAN04G2979 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.0e-140 501.5 340 77.4
GSVIVG01019392001 Vitis vinifera HOM05D003441 ORTHO05D004516 6.5e-140 501.1 419 64.7
FAN13G0786 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.6e-140 500.7 340 77.4
FvH4_7g08220 Fragaria vesca HOM05D003441 ORTHO05D004516 1.1e-139 500.4 340 75.6
MBI04_g35068_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 1.1e-139 500.4 324 79.9
Lsat_1_v5_gn_3_6121 Lactuca sativa HOM05D003441 ORTHO05D004516 1.9e-139 499.6 330 77.6
Peaxi162Scf00074g02032 Petunia axillaris HOM05D003441 ORTHO05D004516 2.1e-138 496.1 338 76.3
SGA_v2.0_scaffold144G35916 Striga asiatica HOM05D003441 ORTHO05D004516 2.3e-137 492.7 337 76.6
CAN.G532.8 Capsicum annuum HOM05D003441 ORTHO05D004516 4.0e-137 491.9 328 77.4
Oeu030097.4 Olea europaea HOM05D003441 ORTHO05D004516 6.8e-137 491.1 333 76.0
Lj2C182G1 Lonicera japonica HOM05D003441 ORTHO05D004516 2.0e-136 489.6 332 76.2
Nitab4.5_0004114g0020 Nicotiana tabacum HOM05D003441 ORTHO05D004516 5.7e-136 488.0 348 73.6
DCAR_005566 Daucus carota HOM05D003441 ORTHO05D004516 2.8e-135 485.7 337 75.7
Aqoxy5G02024 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 4.9e-135 485.0 322 77.0
SHI07186 Sapria himalayana HOM05D003441 ORTHO05D004516 1.1e-134 483.8 362 71.0
PGSC0003DMG400012332 Solanum tuberosum HOM05D003441 ORTHO05D004516 3.1e-134 482.3 337 74.8
Cc08_g15010 Coffea canephora HOM05D003441 ORTHO05D004516 9.2e-134 480.7 325 76.3
FAN08G0848 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.2e-133 480.3 340 75.0
PSO017G3334 Papaver somniferum HOM05D003441 ORTHO05D004516 2.7e-133 479.2 313 78.0
PSO421G0274 Papaver somniferum HOM05D003441 ORTHO05D004516 2.7e-133 479.2 313 78.0
Gohir.A03G019400 Gossypium hirsutum HOM05D003441 ORTHO05D004516 7.8e-133 477.6 329 76.3
Nitab4.5_0001522g0040 Nicotiana tabacum HOM05D003441 ORTHO05D004516 7.8e-133 477.6 344 73.5
FvH4_7g07850 Fragaria vesca HOM05D003441 ORTHO05D004516 1.7e-132 476.5 337 72.4
ClCG01G002520 Citrullus lanatus HOM05D003441 ORTHO05D004516 5.0e-132 474.9 329 75.4
Mapoly0037s0100 Marchantia polymorpha HOM05D003441 ORTHO05D004516 5.0e-132 474.9 317 77.0
Sabra01G0076300 Salix brachista HOM05D003441 ORTHO05D004516 1.9e-131 473.0 345 72.8
AagrBONN_evm.TU.Sc2ySwM_368.2338 Anthoceros agrestis HOM05D003441 ORTHO05D004516 3.6e-130 468.8 341 71.8
FAN10G3500 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.6e-130 468.8 337 71.5
Pp3c6_13890 Physcomitrium patens HOM05D003441 ORTHO05D004516 6.1e-130 468.0 329 73.6
SMO115G0252 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 4.9e-127 458.4 313 73.5
Nitab4.5_0004008g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 6.0e-125 451.4 335 70.4
unitig_62.g23538 Utricularia gibba HOM05D003441 ORTHO05D004516 2.3e-124 449.5 320 73.1
FAN06G2516 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.6e-124 447.6 382 63.1
Nitab4.5_0002290g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.5e-123 446.8 330 71.5
Ciclev10019088m.g Citrus clementina HOM05D003441 ORTHO05D004516 4.3e-123 445.3 306 75.2
Gohir.D11G022333 Gossypium hirsutum HOM05D003441 ORTHO05D004516 4.4e-120 435.3 264 83.7
PGSC0003DMG400026783 Solanum tuberosum HOM05D003441 ORTHO05D004516 5.8e-120 434.9 319 71.5
BolC6t37163H Brassica oleracea HOM05D003441 ORTHO05D004516 1.1e-118 430.6 222 96.8
Cfa012202 Carpinus fangiana HOM05D003441 ORTHO05D004516 7.0e-118 427.9 342 67.5
PSO478G5020 Papaver somniferum HOM05D003441 ORTHO05D004516 2.8e-114 416.0 261 82.0
SMO347G0324 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 8.1e-114 414.5 313 68.1
CDE12G0607 Ceratophyllum demersum HOM05D003441 ORTHO05D004516 4.1e-110 402.1 332 64.8
FAN01G0379 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.6e-109 400.2 300 70.7
CARHR183180 Cardamine hirsuta HOM05D003441 ORTHO05D004516 7.1e-102 374.8 230 83.5
ECA246G1863 Erigeron canadensis HOM05D003441 ORTHO05D004516 6.0e-101 371.7 318 60.4
Lsat_1_v5_gn_2_120601 Lactuca sativa HOM05D003441 ORTHO05D004516 5.1e-100 368.6 330 62.1
Cre06.g297016 Chlamydomonas reinhardtii HOM05D003441 ORTHO05D004516 1.5e-99 367.1 394 54.1
PRCOL_00001151 Prasinoderma coloniale HOM05D003441 ORTHO05D004516 5.6e-99 365.2 407 51.1
HPP92_022012 Vanilla planifolia HOM05D003441 ORTHO05D004516 2.1e-98 363.2 224 81.7
MCO01G486 Micromonas commoda HOM05D003441 ORTHO05D004516 6.4e-95 351.7 317 58.4
FAN13G0171 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.4e-95 351.3 326 58.9
FAN08G2634 Fragaria x ananassa HOM05D003441 ORTHO05D004516 9.3e-94 347.8 326 58.3
FAN03G2549 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.2e-87 326.6 237 73.4
TPR.G33074 Trifolium pratense HOM05D003441 ORTHO05D004516 2.2e-87 326.6 213 77.9
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 8.4e-87 324.7 239 72.0
CBR_g34305 Chara braunii HOM05D003441 ORTHO05D004516 1.0e-84 317.8 254 64.2
Haze_26458 Corylus avellana HOM05D003441 ORTHO05D004516 2.4e-81 306.6 370 47.6
SEGI_31025 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 2.8e-74 283.1 196 72.4
arahy.Tifrunner.gnm1.ann1.ZIDD3N Arachis hypogaea HOM05D003441 ORTHO05D004516 1.5e-72 277.3 245 64.9
arahy.Tifrunner.gnm1.ann1.U109MR Arachis hypogaea HOM05D003441 ORTHO05D004516 1.8e-65 253.8 242 59.9
FAN04G2533 Fragaria x ananassa HOM05D003441 ORTHO05D004516 6.9e-65 251.9 268 53.4
Cfa023957 Carpinus fangiana HOM05D003441 ORTHO05D004516 1.0e-63 248.1 359 41.2
SEGI_12778 Sequoiadendron giganteum HOM05D003441 ORTHO05D022097 2.5e-62 243.4 162 75.9
FvH4_5g19430 Fragaria vesca HOM05D003441 ORTHO05D004516 7.9e-61 238.4 342 42.7
SEGI_39024 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 3.0e-60 236.5 340 43.2
RcHm_v2.0_Chr7g0203931 Rosa chinensis HOM05D003441 ORTHO05D004516 4.3e-59 232.6 329 44.1
FAN06G4150 Fragaria x ananassa HOM05D003441 ORTHO05D022097 6.5e-55 218.8 161 70.2
COL.COLO4_31600 Corchorus olitorius HOM05D003441 ORTHO05D022097 1.4e-49 201.1 111 89.2
FAN18G4545 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.8e-47 193.0 152 65.1
TPR.G12826 Trifolium pratense HOM05D003441 ORTHO05D004516 1.4e-44 184.5 115 81.7
Lsat_1_v5_gn_2_120581 Lactuca sativa HOM05D003441 ORTHO05D004516 6.7e-44 182.2 143 67.1
Glyma.08G323500 Glycine max HOM05D003441 ORTHO05D004516 8.8e-36 155.2 106 71.7
Lsat_1_v5_gn_7_95160 Lactuca sativa HOM05D003441 ORTHO05D005003 1.5e-35 154.5 176 50.6
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 3.7e-34 149.8 171 55.0
SMO163G0061 Selaginella moellendorffii HOM05D003441 ORTHO05D022097 1.5e-30 137.9 112 59.8
FAN06G0185 Fragaria x ananassa HOM05D003441 ORTHO05D004516 4.7e-29 132.9 123 57.7
BolC6t37162H Brassica oleracea HOM05D003441 ORTHO05D022097 1.5e-27 127.9 71 85.9
QL02p047919 Quercus lobata HOM05D003441 ORTHO05D004516 2.0e-27 127.5 85 77.6
QL02p047967 Quercus lobata HOM05D003441 ORTHO05D004516 1.7e-26 124.4 67 89.6
Actinidia14580 Actinidia chinensis HOM05D003441 ORTHO05D004516 4.0e-20 103.2 109 54.1
FAN01G2616 Fragaria x ananassa HOM05D003441 ORTHO05D022097 1.2e-19 101.7 77 63.6
CAN.G8.43 Capsicum annuum HOM05D000808 ORTHO05D001769 1.6e-16 91.3 48 91.7
Lsat_1_v5_gn_1_103221 Lactuca sativa HOM05D002170 ORTHO05D005003 4.4e-11 73.2 49 73.5
Oeu018831.2 Olea europaea HOM05D000241 ORTHO05D001001 5.4e-09 66.2 45 71.1
Dinv38921 Davidia involucrata HOM05D003441 ORTHO05D045117 3.5e-08 63.5 65 53.8
CDE04G1391 Ceratophyllum demersum HOM05D003441 ORTHO05D129623 2.3e-07 60.8 40 70.0
AUR62004519 Chenopodium quinoa HOM05D003441 ORTHO05D004516 3.9e-07 60.1 97 40.2


User provided reference genes

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