Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 2.4e-274 948.3 534 100.0
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 5.5e-258 894.0 539 95.5
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 4.6e-257 891.0 544 95.8
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 2.3e-256 888.6 550 93.6
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.5e-255 885.9 550 93.5
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 5.1e-248 860.9 544 89.3
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 5.9e-244 847.4 426 96.5
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 7.7e-244 847.0 544 87.3
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 1.0e-243 846.7 545 86.4
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 3.9e-240 834.7 535 86.5
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 6.3e-238 827.4 548 84.7
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 2.2e-235 818.9 544 85.3
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 2.0e-231 805.8 549 84.2
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 4.4e-231 804.7 545 84.2
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 2.2e-230 802.4 538 84.8
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 1.1e-226 790.0 535 84.1
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 7.7e-220 767.3 408 94.4
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 2.7e-217 758.8 555 80.4
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.8e-216 756.1 529 77.9
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 3.7e-190 668.7 435 74.0
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.4e-189 666.8 422 75.8
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.9e-189 666.4 448 72.5
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 2.4e-189 666.0 423 74.0
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 2.4e-189 666.0 423 74.0
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 7.0e-189 664.5 422 73.9
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 1.0e-187 660.6 435 73.1
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 2.3e-187 659.4 420 76.7
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 5.0e-187 658.3 433 73.9
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 8.6e-187 657.5 437 73.5
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 8.6e-187 657.5 423 74.7
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 1.2e-185 653.7 437 72.8
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 1.6e-185 653.3 420 75.0
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 2.1e-185 652.9 420 75.2
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.1e-185 652.9 437 73.2
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 2.1e-185 652.9 417 75.3
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 6.2e-185 651.4 438 71.7
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 2.3e-184 649.4 424 74.1
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 8.9e-184 647.5 430 73.7
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 1.2e-183 647.1 424 74.8
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 2.0e-183 646.4 422 73.5
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 2.6e-183 646.0 420 74.3
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 3.4e-183 645.6 458 69.9
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 5.8e-183 644.8 424 74.8
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 7.5e-183 644.4 438 71.0
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 7.5e-183 644.4 424 73.8
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 7.5e-183 644.4 421 74.1
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 7.5e-183 644.4 424 72.4
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 7.5e-183 644.4 420 74.0
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.3e-182 643.7 421 74.1
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 1.3e-182 643.7 427 73.3
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.3e-182 643.7 442 71.7
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.7e-182 643.3 424 73.3
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 3.7e-182 642.1 447 70.9
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.7e-182 642.1 425 73.2
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.9e-181 639.8 420 72.4
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 4.1e-181 638.6 419 72.8
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 5.4e-181 638.3 436 72.5
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 7.1e-181 637.9 432 72.9
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 2.1e-180 636.3 424 71.9
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 2.7e-180 636.0 420 73.3
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.5e-180 635.6 424 72.6
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 7.8e-180 634.4 424 72.4
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.3e-179 633.6 423 73.3
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 2.3e-179 632.9 417 73.1
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 8.6e-179 630.9 437 72.1
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.1e-178 630.6 427 72.8
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.1e-178 630.6 427 72.8
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 2.5e-178 629.4 425 74.4
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 2.5e-178 629.4 423 71.6
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 2.5e-178 629.4 428 71.5
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 7.3e-178 627.9 420 72.6
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 1.2e-177 627.1 441 70.5
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 4.7e-177 625.2 441 70.3
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 8.9e-176 620.9 424 71.9
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.5e-175 620.2 419 72.6
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 2.0e-175 619.8 432 69.4
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 2.6e-175 619.4 436 69.7
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 5.8e-175 618.2 425 71.3
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.3e-174 617.1 431 70.5
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 6.4e-174 614.8 417 70.7
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 8.4e-174 614.4 477 65.4
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.6e-172 610.1 424 70.0
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 6.6e-171 604.7 396 73.7
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 6.6e-171 604.7 342 82.2
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.5e-170 603.6 422 70.1
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 4.3e-170 602.1 436 69.5
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 1.4e-168 597.0 457 65.0
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 3.5e-164 582.4 409 68.5
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.3e-163 580.5 421 66.5
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 5.1e-163 578.6 452 64.8
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.5e-162 577.0 417 69.1
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 3.3e-162 575.9 444 64.2
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 5.6e-162 575.1 420 67.1
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.3e-161 573.9 436 65.8
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 2.1e-161 573.2 422 68.0
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.6e-159 566.2 421 66.0
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 8.4e-158 561.2 424 66.0
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 4.6e-156 555.4 383 70.0
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.5e-154 549.7 387 69.8
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.5e-151 540.4 394 66.5
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.5e-151 540.4 420 63.3
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.7e-150 537.0 386 69.2
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 4.6e-148 528.9 314 78.0
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.3e-147 526.6 396 65.9
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 3.7e-145 519.2 322 75.2
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 3.3e-138 496.1 368 67.1
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 1.4e-136 490.7 443 59.1
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 9.4e-133 478.0 344 67.7
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 1.0e-131 474.6 227 96.9
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 7.2e-125 451.8 293 72.4
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 8.8e-123 444.9 322 66.8
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 1.5e-119 434.1 356 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 6.5e-118 428.7 412 54.9
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 8.0e-116 421.8 449 49.4
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.4e-112 410.2 445 53.3
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 1.2e-111 407.9 354 56.8
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.9e-109 400.6 313 64.5
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 3.3e-106 389.8 324 55.2
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 1.8e-104 384.0 327 62.4
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 4.1e-104 382.9 306 61.1
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 2.9e-94 350.1 190 82.6
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 2.8e-89 333.6 425 44.5
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 2.7e-79 300.4 224 66.1
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 2.1e-76 290.8 259 57.5
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 5.4e-48 196.4 115 79.1
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 4.3e-45 186.8 259 47.5
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 2.8e-44 184.1 135 66.7
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 2.8e-44 184.1 153 66.0
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 1.2e-39 168.7 294 36.7
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 1.6e-28 131.7 77 77.9
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 4.8e-28 130.2 255 35.7
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 4.8e-28 130.2 161 52.8
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 2.6e-26 124.4 125 59.2
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.0e-25 122.5 79 70.9
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 1.1e-21 109.0 205 36.6
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 3.3e-21 107.5 154 68.8
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.7e-20 104.0 80 63.8
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.0e-13 81.6 52 65.4
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 8.5e-09 66.2 29 89.7
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 3.9e-06 57.4 28 89.3


User provided reference genes

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