Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 1.1e-36 156.0 72 100.0
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 9.6e-25 116.3 56 91.1
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 9.6e-25 116.3 56 91.1
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 9.6e-25 116.3 56 91.1
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 9.6e-25 116.3 56 91.1
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 3.7e-24 114.4 56 87.5
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 4.8e-24 114.0 56 87.5
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 6.2e-24 113.6 60 83.3
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 6.2e-24 113.6 53 92.5
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 8.2e-24 113.2 56 85.7
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 1.1e-23 112.8 56 89.3
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 1.1e-23 112.8 56 89.3
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 1.1e-23 112.8 56 89.3
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 1.8e-23 112.1 56 83.9
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 2.4e-23 111.7 56 89.3
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 2.4e-23 111.7 56 89.3
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 2.4e-23 111.7 56 89.3
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 3.1e-23 111.3 56 87.5
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 3.1e-23 111.3 53 88.7
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 2.0e-22 108.6 64 73.4
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 2.6e-22 108.2 64 75.0
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 2.6e-22 108.2 66 71.2
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 3.4e-22 107.8 59 79.7
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 3.4e-22 107.8 56 80.4
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 5.8e-22 107.1 61 77.0
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 5.8e-22 107.1 64 73.4
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 5.8e-22 107.1 64 73.4
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 5.8e-22 107.1 64 73.4
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 7.6e-22 106.7 56 82.1
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 1.0e-21 106.3 64 71.9
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 1.0e-21 106.3 64 73.4
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 1.7e-21 105.5 64 71.9
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 1.7e-21 105.5 64 71.9
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 1.7e-21 105.5 64 71.9
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.7e-21 105.5 64 73.4
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.7e-21 105.5 64 73.4
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 1.7e-21 105.5 64 73.4
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 2.2e-21 105.1 61 72.1
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 2.2e-21 105.1 64 71.9
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 2.2e-21 105.1 64 71.9
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 2.2e-21 105.1 64 71.9
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 2.9e-21 104.8 66 69.7
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.9e-21 104.8 56 80.4
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 2.9e-21 104.8 56 80.4
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 2.9e-21 104.8 64 70.3
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.9e-21 104.8 56 78.6
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 3.8e-21 104.4 64 70.3
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 3.8e-21 104.4 64 68.8
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 3.8e-21 104.4 64 70.3
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 5.0e-21 104.0 64 70.3
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 5.0e-21 104.0 56 80.4
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 5.0e-21 104.0 56 80.4
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 5.0e-21 104.0 56 78.6
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 5.0e-21 104.0 64 70.3
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 6.5e-21 103.6 64 71.9
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 8.4e-21 103.2 64 70.3
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 8.4e-21 103.2 56 76.8
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 8.4e-21 103.2 64 70.3
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 8.4e-21 103.2 64 68.8
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 8.4e-21 103.2 64 70.3
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 8.4e-21 103.2 64 70.3
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 1.1e-20 102.8 64 70.3
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 1.1e-20 102.8 64 68.8
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 1.1e-20 102.8 64 68.8
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.1e-20 102.8 64 70.3
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.1e-20 102.8 64 70.3
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.1e-20 102.8 64 70.3
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 1.1e-20 102.8 64 70.3
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 1.1e-20 102.8 64 70.3
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 1.4e-20 102.4 64 68.8
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 1.4e-20 102.4 64 68.8
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 1.4e-20 102.4 64 70.3
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 1.4e-20 102.4 64 67.2
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.4e-20 102.4 64 70.3
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.4e-20 102.4 64 70.3
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 1.9e-20 102.1 64 68.8
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 1.9e-20 102.1 64 70.3
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 2.5e-20 101.7 64 68.8
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.5e-20 101.7 56 78.6
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.5e-20 101.7 64 70.3
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.5e-20 101.7 64 70.3
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 3.2e-20 101.3 64 68.8
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 3.2e-20 101.3 56 73.2
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 3.2e-20 101.3 56 73.2
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 4.2e-20 100.9 56 76.8
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 4.2e-20 100.9 56 76.8
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 5.5e-20 100.5 56 76.8
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 5.5e-20 100.5 56 76.8
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 5.5e-20 100.5 56 76.8
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 5.5e-20 100.5 56 76.8
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 5.5e-20 100.5 64 67.2
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 7.1e-20 100.1 63 69.8
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 7.1e-20 100.1 64 65.6
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 7.1e-20 100.1 64 65.6
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 7.1e-20 100.1 56 76.8
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 7.1e-20 100.1 53 75.5
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 9.3e-20 99.8 64 70.3
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 1.2e-19 99.4 64 68.8
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 1.2e-19 99.4 56 75.0
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 1.2e-19 99.4 64 67.2
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 1.2e-19 99.4 61 68.9
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 1.6e-19 99.0 64 64.1
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 2.1e-19 98.6 56 71.4
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.1e-19 98.6 56 75.0
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 2.1e-19 98.6 62 69.4
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 2.1e-19 98.6 64 68.8
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 2.7e-19 98.2 56 75.0
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 2.7e-19 98.2 56 75.0
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 2.7e-19 98.2 56 75.0
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 3.5e-19 97.8 64 65.6
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 3.5e-19 97.8 64 68.8
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 4.6e-19 97.4 61 67.2
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 6.1e-19 97.1 64 68.8
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 6.1e-19 97.1 56 76.8
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 6.1e-19 97.1 56 76.8
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 6.1e-19 97.1 64 64.1
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 6.1e-19 97.1 64 65.6
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 6.1e-19 97.1 64 67.2
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 6.1e-19 97.1 64 68.8
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 6.1e-19 97.1 64 65.6
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 7.9e-19 96.7 61 65.6
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.0e-18 96.3 56 73.2
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 1.0e-18 96.3 61 70.5
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 1.0e-18 96.3 64 65.6
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 1.0e-18 96.3 64 65.6
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 1.0e-18 96.3 64 67.2
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 1.3e-18 95.9 61 65.6
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 1.3e-18 95.9 64 65.6
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 1.8e-18 95.5 61 63.9
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 1.8e-18 95.5 64 65.6
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 1.8e-18 95.5 56 71.4
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 3.0e-18 94.7 64 64.1
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 5.1e-18 94.0 56 73.2
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 5.1e-18 94.0 56 69.6
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.1e-17 92.8 53 71.7
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 1.1e-17 92.8 56 71.4
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 1.5e-17 92.4 64 64.1
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 1.9e-17 92.0 64 67.2
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 2.5e-17 91.7 47 87.2
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 2.5e-17 91.7 64 64.1
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 4.3e-17 90.9 56 71.4
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 4.3e-17 90.9 56 71.4
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 4.3e-17 90.9 56 71.4
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 4.3e-17 90.9 67 67.2
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 2.8e-16 88.2 61 63.9
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 3.7e-16 87.8 54 72.2
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 6.3e-16 87.0 64 59.4
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 8.2e-16 86.7 56 67.9
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 5.3e-15 84.0 65 60.0
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 9.0e-15 83.2 56 66.1
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 3.4e-14 81.3 47 72.3
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 3.4e-14 81.3 56 71.4
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 3.4e-14 81.3 47 72.3
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 3.4e-14 81.3 65 58.5
BcaC05g28588 Brassica carinata HOM05D015584 ORTHO05D016118 2.9e-13 78.2 40 82.5
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 3.8e-13 77.8 39 82.1
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 1.9e-12 75.5 47 66.0
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 3.6e-11 71.2 63 52.4
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.4e-10 69.3 38 73.7
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 3.0e-10 68.2 64 48.4
C05p46930 Brassica napus HOM05D003678 ORTHO05D016118 3.9e-10 67.8 36 80.6
BolC5t33423H Brassica oleracea HOM05D003678 ORTHO05D016118 3.9e-10 67.8 36 80.6
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 4.3e-09 64.3 64 45.3
BcaC08g45872 Brassica carinata HOM05D005572 ORTHO05D032868 3.7e-08 61.2 33 81.8
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 6.3e-08 60.5 65 47.7
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 6.3e-08 60.5 56 50.0
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 5.3e-07 57.4 38 71.1
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 2.6e-06 55.1 63 46.0


User provided reference genes

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