Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 2.0e-220 768.8 397 100.0
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 2.0e-220 768.8 397 100.0
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 6.3e-219 763.8 397 99.5
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 1.2e-209 733.0 397 96.5
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 1.2e-204 716.5 402 94.3
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 1.2e-204 716.5 402 94.3
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 4.6e-193 677.9 410 89.3
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 3.0e-192 675.2 405 89.4
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 1.6e-190 669.5 414 87.4
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 1.4e-178 629.8 408 82.6
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 1.1e-170 603.6 408 78.7
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 6.5e-155 551.2 424 72.6
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 3.6e-145 518.8 418 70.3
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 2.2e-134 483.0 385 67.5
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.1e-133 480.7 377 68.2
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.1e-133 480.7 377 68.2
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 2.4e-133 479.6 375 69.1
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 4.1e-133 478.8 392 66.1
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.2e-132 477.2 378 68.3
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 5.9e-132 474.9 377 67.6
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 1.7e-131 473.4 389 65.8
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 2.9e-131 472.6 381 66.4
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 5.0e-131 471.9 380 66.8
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 7.2e-130 468.0 378 68.3
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 7.2e-130 468.0 382 66.5
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 1.2e-129 467.2 367 69.2
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 3.6e-129 465.7 389 66.1
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 1.8e-128 463.4 371 67.1
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 1.8e-128 463.4 400 64.0
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 2.3e-128 463.0 366 69.4
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 2.3e-128 463.0 409 62.3
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 6.7e-128 461.5 371 65.2
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 1.1e-127 460.7 372 66.1
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 1.5e-127 460.3 392 65.3
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 2.0e-127 459.9 388 63.4
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 4.4e-127 458.8 382 65.4
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 2.8e-126 456.1 365 65.5
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 1.1e-125 454.1 373 67.0
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 2.4e-125 453.0 283 85.9
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 2.4e-125 453.0 375 64.3
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 5.3e-125 451.8 371 66.3
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 7.0e-125 451.4 400 61.5
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 5.9e-124 448.4 408 62.7
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 5.9e-124 448.4 409 63.1
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 8.5e-123 444.5 379 65.7
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 1.9e-122 443.4 377 62.3
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 1.9e-122 443.4 408 62.5
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 2.5e-122 443.0 392 60.7
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 4.2e-122 442.2 393 62.1
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 5.5e-122 441.8 411 61.3
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 4.7e-121 438.7 372 64.2
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 6.1e-121 438.3 375 63.2
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 8.0e-121 438.0 384 62.0
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 1.4e-120 437.2 389 63.5
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 2.3e-120 436.4 378 62.2
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 2.3e-120 436.4 367 63.8
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 4.0e-120 435.6 387 62.3
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 6.8e-120 434.9 372 62.6
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 2.0e-119 433.3 414 58.9
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 4.4e-119 432.2 398 60.8
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 4.4e-119 432.2 376 62.5
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 1.3e-118 430.6 392 61.5
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 1.3e-118 430.6 375 62.1
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 1.7e-118 430.3 394 60.2
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 2.2e-118 429.9 404 59.9
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 4.8e-118 428.7 386 62.4
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 1.8e-117 426.8 375 62.4
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 3.5e-116 422.5 389 60.4
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 1.0e-115 421.0 425 56.7
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.7e-115 420.2 383 62.1
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.7e-115 420.2 316 68.7
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 2.2e-115 419.9 373 62.2
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 1.9e-114 416.8 385 59.2
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 4.2e-114 415.6 394 58.9
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 1.6e-113 413.7 439 54.9
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 2.7e-113 412.9 297 71.0
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 4.0e-112 409.1 369 59.9
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 4.0e-112 409.1 355 63.4
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 5.2e-112 408.7 379 57.8
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 8.3e-110 401.4 293 72.7
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 1.4e-109 400.6 303 69.3
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 3.1e-109 399.4 303 68.6
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 2.7e-108 396.4 275 72.4
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 7.7e-108 394.8 380 57.4
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 1.7e-107 393.7 296 70.6
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 2.3e-107 393.3 292 71.2
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 3.3e-106 389.4 300 68.3
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 1.8e-104 383.6 270 74.8
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 9.8e-103 377.9 390 53.3
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 3.5e-100 369.4 291 64.9
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 5.0e-99 365.5 408 52.2
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 6.6e-99 365.2 281 67.3
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 1.1e-98 364.4 274 66.1
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 1.4e-96 357.5 386 53.9
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 2.6e-95 353.2 366 56.0
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 1.9e-93 347.1 420 48.8
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 1.3e-91 340.9 216 76.9
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 4.3e-90 335.9 383 53.8
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 2.1e-89 333.6 280 59.6
Ciclev10002028m.g Citrus clementina HOM05D006305 ORTHO05D007984 7.5e-87 325.1 259 67.2
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 1.2e-84 317.8 358 49.2
TPR.G22794 Trifolium pratense HOM05D006305 ORTHO05D007984 1.0e-83 314.7 244 67.6
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 4.3e-82 309.3 387 51.2
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 5.2e-80 302.4 280 60.4
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 4.4e-79 299.3 172 88.4
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 4.9e-78 295.8 382 48.2
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 5.4e-77 292.4 328 53.4
Hma1.2p1_0666F.1_g199530 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.1e-74 284.6 203 72.9
MBI04_g44620_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 5.6e-66 255.8 217 64.1
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 5.8e-63 245.7 271 48.3
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 1.9e-61 240.7 197 59.4
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 9.3e-53 211.8 304 47.7
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.2e-52 211.5 261 49.8
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 5.1e-43 179.5 187 46.0
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 3.7e-41 173.3 290 36.6
MCO01G606 Micromonas commoda HOM05D006305 ORTHO05D007984 2.2e-33 147.5 197 39.1
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 2.2e-33 147.5 149 55.0
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 3.6e-28 130.2 151 49.7
Glyma.20G232002 Glycine max HOM05D006305 ORTHO05D007984 2.3e-19 100.9 74 70.3
Pp3c16_18520 Physcomitrium patens HOM05D006305 ORTHO05D007984 4.2e-13 80.1 170 33.5
Cpa.g.sc48.16 Carica papaya HOM05D006305 ORTHO05D007984 2.3e-11 74.3 92 48.9
MBI04_g33407_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 4.5e-07 60.1 136 33.8
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 7.7e-07 59.3 134 36.6


User provided reference genes

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