Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 9.2e-201 703.4 358 100.0
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 2.3e-199 698.7 359 99.7
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 2.1e-197 692.2 359 98.1
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 4.0e-196 688.0 359 97.8
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 6.8e-196 687.2 384 93.0
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 1.7e-191 672.5 358 95.3
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 2.1e-189 665.6 358 93.9
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 2.6e-187 658.7 361 93.1
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 2.6e-187 658.7 358 93.9
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 7.1e-185 650.6 359 92.8
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 1.2e-179 633.3 358 89.7
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 2.0e-179 632.5 366 90.7
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 8.9e-172 607.1 358 85.8
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 2.0e-139 499.6 365 69.9
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 2.2e-138 496.1 365 68.8
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.9e-137 493.0 365 69.3
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-136 490.3 364 69.5
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 2.1e-136 489.6 364 69.5
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 3.6e-136 488.8 365 68.5
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 4.6e-136 488.4 358 69.3
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.0e-135 487.3 365 69.0
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 1.0e-135 487.3 364 69.2
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 1.8e-135 486.5 365 67.7
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 1.8e-135 486.5 364 68.7
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.3e-135 486.1 363 68.6
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 2.3e-135 486.1 364 68.7
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 2.3e-135 486.1 363 69.1
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 1.5e-134 483.4 363 69.1
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 2.5e-134 482.6 364 68.7
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 4.3e-134 481.9 363 68.0
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.3e-133 480.3 364 68.7
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.3e-133 480.3 364 68.7
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 1.3e-133 480.3 363 67.2
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.7e-133 479.9 364 68.7
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 2.8e-133 479.2 365 68.5
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 1.1e-132 477.2 386 64.2
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 1.8e-132 476.5 363 67.5
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 3.1e-132 475.7 375 66.4
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 9.1e-132 474.2 365 66.6
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.0e-131 473.0 366 68.0
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 2.0e-131 473.0 365 67.9
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.0e-131 473.0 365 67.7
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 2.6e-131 472.6 364 66.2
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 2.6e-131 472.6 365 67.7
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 4.5e-131 471.9 366 66.7
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 5.9e-131 471.5 365 66.8
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 5.9e-131 471.5 365 66.8
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.0e-130 470.7 365 67.4
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 2.9e-130 469.2 366 66.7
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 6.5e-130 468.0 381 64.6
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.9e-129 466.5 368 65.5
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 1.9e-129 466.5 365 66.8
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 2.5e-129 466.1 363 65.0
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 2.1e-128 463.0 363 64.7
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 2.7e-128 462.6 365 65.8
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 2.7e-128 462.6 361 66.2
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 3.6e-128 462.2 365 66.0
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 6.1e-128 461.5 366 65.8
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 7.9e-128 461.1 368 65.8
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.0e-127 460.7 363 64.7
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.4e-127 460.3 367 67.0
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 3.0e-127 459.1 365 64.4
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 3.9e-127 458.8 362 64.6
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 5.1e-127 458.4 363 64.2
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 2.6e-126 456.1 364 65.1
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 2.6e-126 456.1 363 64.2
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 3.3e-126 455.7 364 64.3
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 2.8e-125 452.6 370 63.8
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 1.4e-124 450.3 360 66.1
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 4.1e-124 448.7 359 64.1
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 6.9e-124 448.0 365 64.7
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 9.1e-124 447.6 359 64.1
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.3e-122 443.7 365 64.4
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 1.3e-122 443.7 366 65.0
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 3.2e-121 439.1 362 64.4
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 7.2e-121 438.0 364 63.5
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 2.1e-120 436.4 363 62.8
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 2.1e-120 436.4 364 63.7
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 8.0e-120 434.5 364 63.7
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.0e-118 429.9 359 64.3
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 3.3e-118 429.1 307 70.4
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 4.4e-118 428.7 364 62.9
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 5.7e-118 428.3 338 65.1
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 6.3e-117 424.9 357 62.7
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 4.1e-116 422.2 365 63.8
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.2e-115 420.6 368 61.1
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 3.5e-115 419.1 388 59.3
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.5e-114 414.8 364 62.6
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 6.5e-114 414.8 366 60.9
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.7e-112 409.5 363 61.4
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 3.3e-110 402.5 377 56.2
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 1.3e-106 390.6 369 56.9
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 6.5e-106 388.3 317 64.4
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 4.8e-101 372.1 333 61.0
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 8.3e-101 371.3 303 64.7
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 8.3e-101 371.3 358 58.7
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 9.1e-100 367.9 359 55.7
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 1.2e-99 367.5 364 56.6
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.5e-99 365.9 386 50.3
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 2.9e-98 362.8 364 56.9
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 2.9e-98 362.8 378 54.5
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 5.0e-98 362.1 358 55.6
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 1.3e-90 337.4 278 62.6
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 5.0e-90 335.5 379 54.6
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 7.3e-89 331.6 340 52.4
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.4e-84 316.6 261 64.4
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 9.2e-84 314.7 308 54.9
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 3.9e-82 309.3 170 95.9
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 6.8e-79 298.5 382 42.4
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 2.7e-75 286.6 360 45.3
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 3.4e-70 269.6 365 46.3
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 9.2e-68 261.5 427 39.6
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 5.6e-65 252.3 278 51.8
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 2.6e-62 243.4 173 71.7
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 2.9e-61 240.0 167 72.5
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 9.2e-60 235.0 302 47.7
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 7.8e-59 231.9 196 61.2
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 5.6e-57 225.7 202 57.9
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 2.4e-55 220.3 201 58.7
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 4.9e-53 212.6 214 54.2
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 3.8e-45 186.4 161 60.9
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.2e-44 183.0 122 75.4
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.0e-42 178.3 122 73.8
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 8.7e-42 175.3 144 63.9
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 6.9e-39 165.6 163 57.7
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 2.9e-37 160.2 303 38.3
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 3.5e-35 153.3 139 60.4
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.5e-35 153.3 176 45.5
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 6.0e-35 152.5 200 44.0
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 3.9e-34 149.8 244 40.2
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.6e-32 144.4 122 63.1
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 4.9e-29 132.9 139 57.6
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 2.7e-27 127.1 139 51.8
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 2.9e-21 107.1 385 24.2
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 8.5e-21 105.5 114 48.2
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.6e-19 101.3 72 66.7
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 7.9e-19 99.0 79 65.8
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.5e-17 94.7 84 58.3
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.7e-13 81.3 77 53.2
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 2.2e-13 80.9 397 22.2
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-10 71.2 142 32.4


User provided reference genes

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