Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 3.6e-200 702.2 632 100.0
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 3.6e-200 702.2 632 100.0
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 7.3e-193 677.9 632 98.4
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 9.5e-193 677.6 632 98.1
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 2.8e-192 676.0 632 98.1
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 1.5e-177 627.1 636 95.3
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 5.6e-161 572.0 648 89.5
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 9.3e-156 554.7 653 87.9
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 1.2e-150 537.7 653 87.0
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 1.9e-145 520.4 657 85.5
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 9.7e-145 518.1 651 86.2
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 9.1e-135 485.0 660 80.5
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 4.0e-114 416.4 629 77.1
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 4.1e-95 353.2 273 75.8
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 4.1e-87 326.6 637 71.1
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 3.5e-86 323.6 616 71.8
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 6.0e-86 322.8 623 71.4
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 1.0e-85 322.0 590 74.1
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 3.0e-85 320.5 631 70.2
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 3.9e-85 320.1 629 72.2
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 5.0e-85 319.7 565 77.7
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 6.6e-85 319.3 653 69.4
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 1.9e-84 317.8 597 73.2
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 2.5e-84 317.4 640 70.2
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 3.3e-84 317.0 633 70.0
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 7.3e-84 315.8 627 70.3
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 9.5e-84 315.5 579 74.4
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.2e-83 315.1 632 69.9
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 2.1e-83 314.3 632 69.9
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 1.8e-82 311.2 605 71.9
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 2.3e-82 310.8 615 71.4
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 2.3e-82 310.8 593 72.5
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 2.3e-82 310.8 644 69.1
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 3.1e-82 310.5 574 73.5
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 3.1e-82 310.5 638 69.6
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 4.0e-82 310.1 632 70.4
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 6.8e-82 309.3 564 75.0
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 6.8e-82 309.3 582 74.2
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 8.9e-82 308.9 580 74.5
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 1.2e-81 308.5 555 76.0
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 1.5e-81 308.1 556 76.3
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 2.0e-81 307.8 625 70.1
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 2.6e-81 307.4 581 74.4
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 2.6e-81 307.4 584 74.3
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 4.4e-81 306.6 640 68.4
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 4.4e-81 306.6 572 74.0
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 1.3e-80 305.1 568 73.9
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 1.7e-80 304.7 536 78.5
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 2.2e-80 304.3 625 70.4
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 2.2e-80 304.3 644 69.6
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 4.9e-80 303.1 559 76.0
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 4.9e-80 303.1 631 68.9
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 6.4e-80 302.8 619 70.1
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 1.4e-79 301.6 571 74.4
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 3.2e-79 300.4 657 68.3
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 5.4e-79 299.7 553 75.4
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 7.0e-79 299.3 576 64.4
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 9.2e-79 298.9 520 80.0
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 1.2e-78 298.5 698 50.9
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 1.6e-78 298.1 633 69.5
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 2.1e-78 297.7 633 69.4
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 2.7e-78 297.4 630 68.4
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 4.6e-78 296.6 571 74.8
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 1.3e-77 295.0 644 67.2
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 3.0e-77 293.9 565 73.6
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 3.9e-77 293.5 574 72.6
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 5.1e-77 293.1 582 71.0
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 8.6e-77 292.4 606 70.6
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 1.5e-76 291.6 616 69.6
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 7.3e-76 289.3 524 77.7
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 9.5e-76 288.9 612 69.1
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 1.2e-75 288.5 641 68.0
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 1.2e-73 282.0 616 69.2
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 2.6e-73 280.8 526 76.8
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 3.4e-73 280.4 614 69.2
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 5.8e-73 279.6 639 68.5
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 9.9e-73 278.9 525 76.6
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 3.7e-72 276.9 617 69.7
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 3.7e-72 276.9 546 75.6
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 1.4e-71 275.0 536 75.0
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 1.9e-71 274.6 682 41.8
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 3.2e-71 273.9 621 68.3
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 7.1e-71 272.7 551 75.3
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 9.2e-71 272.3 564 72.9
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 1.6e-70 271.6 528 75.4
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 2.7e-70 270.8 564 72.9
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 4.6e-70 270.0 546 38.5
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 6.0e-70 269.6 640 66.1
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 5.2e-66 256.5 640 56.1
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 1.1e-63 248.8 261 56.7
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 5.4e-63 246.5 711 56.1
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 1.2e-62 245.4 535 73.1
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 4.6e-62 243.4 195 64.6
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 1.1e-60 238.8 654 64.1
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 2.0e-57 228.0 647 58.4
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 4.4e-57 226.9 182 62.1
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.4e-55 221.9 259 51.4
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 2.4e-47 194.5 474 76.2
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 3.2e-47 194.1 147 61.2
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 2.5e-39 167.9 241 45.6
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 6.7e-37 159.8 188 62.8
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 1.1e-36 159.1 110 65.5
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 1.5e-33 148.7 110 64.5
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 1.4e-31 142.1 115 58.3
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 1.3e-29 135.6 110 61.8
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.3e-27 129.0 80 77.5
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 1.6e-27 128.6 195 37.4
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.2e-27 128.3 173 45.7
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.4e-26 125.6 80 75.0
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 6.9e-26 123.2 105 61.9
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 2.2e-19 101.7 185 42.2
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 4.8e-19 100.5 123 43.9
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 4.1e-18 97.4 120 43.3
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 7.9e-14 83.2 98 46.9
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 5.1e-13 80.5 112 37.5
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 1.8e-10 72.0 72 84.7
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 1.2e-09 69.3 149 34.9


User provided reference genes

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