Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 1.2e-112 409.8 201 100.0
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 1.2e-64 250.4 186 73.1
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 3.8e-63 245.4 186 71.0
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 4.9e-58 228.4 113 95.6
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 4.4e-51 205.3 164 67.7
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 3.2e-49 199.1 112 86.6
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 4.1e-49 198.7 112 86.6
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 4.1e-49 198.7 112 86.6
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 4.1e-49 198.7 112 86.6
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 2.7e-48 196.1 112 84.8
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 2.7e-48 196.1 112 84.8
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 1.9e-46 189.9 184 59.2
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 2.8e-45 186.0 161 64.0
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 6.2e-45 184.9 94 93.6
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 1.9e-41 173.3 112 74.1
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 3.0e-39 166.0 112 68.8
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 8.6e-39 164.5 113 71.7
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 1.1e-38 164.1 112 68.8
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 1.5e-38 163.7 112 68.8
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 2.5e-38 162.9 114 69.3
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 4.4e-35 152.1 119 64.7
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 4.9e-34 148.7 106 71.7
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 6.4e-34 148.3 159 55.3
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 8.3e-34 147.9 122 62.3
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 1.9e-33 146.7 124 59.7
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 2.4e-33 146.4 113 64.6
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 4.1e-33 145.6 119 63.0
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 5.4e-33 145.2 119 62.2
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 7.1e-33 144.8 98 68.4
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 2.1e-32 143.3 122 59.0
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 2.1e-32 143.3 117 62.4
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 4.6e-32 142.1 123 60.2
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 4.6e-32 142.1 122 59.0
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 4.6e-32 142.1 110 61.8
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 6.0e-32 141.7 104 64.4
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 1.0e-31 141.0 117 59.8
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 1.7e-31 140.2 119 57.1
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 3.9e-31 139.0 113 61.9
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 5.1e-31 138.7 99 68.7
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 5.1e-31 138.7 120 60.8
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 6.6e-31 138.3 122 58.2
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 6.6e-31 138.3 113 61.9
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 8.6e-31 137.9 110 62.7
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 8.6e-31 137.9 110 62.7
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 8.6e-31 137.9 125 56.8
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 1.5e-30 137.1 122 57.4
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 2.5e-30 136.3 122 59.8
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 2.5e-30 136.3 122 59.8
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.5e-30 136.3 110 61.8
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 2.5e-30 136.3 114 60.5
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 2.5e-30 136.3 114 60.5
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 2.5e-30 136.3 115 60.9
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 4.3e-30 135.6 97 67.0
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 4.3e-30 135.6 97 67.0
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 4.3e-30 135.6 97 67.0
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 4.3e-30 135.6 126 56.3
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 4.3e-30 135.6 98 65.3
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 5.6e-30 135.2 122 58.2
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 5.6e-30 135.2 122 58.2
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 7.3e-30 134.8 130 57.7
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 1.2e-29 134.0 117 59.8
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 1.2e-29 134.0 123 56.9
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 1.2e-29 134.0 135 53.3
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 1.6e-29 133.7 122 57.4
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 1.6e-29 133.7 113 59.3
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 1.6e-29 133.7 122 59.0
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 1.6e-29 133.7 122 57.4
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 2.1e-29 133.3 118 56.8
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 2.1e-29 133.3 122 58.2
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 2.1e-29 133.3 118 57.6
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 3.6e-29 132.5 117 59.8
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 4.7e-29 132.1 117 59.0
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 4.7e-29 132.1 115 58.3
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 6.2e-29 131.7 128 55.5
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 8.1e-29 131.3 124 55.6
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 8.1e-29 131.3 120 58.3
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 8.1e-29 131.3 117 59.0
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 1.1e-28 131.0 115 60.9
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 1.1e-28 131.0 115 60.9
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 1.1e-28 131.0 122 54.1
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 1.1e-28 131.0 122 54.9
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 1.4e-28 130.6 104 59.6
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 1.8e-28 130.2 118 57.6
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 1.8e-28 130.2 99 64.6
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 1.8e-28 130.2 104 57.7
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.4e-28 129.8 118 55.1
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 2.4e-28 129.8 122 56.6
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 3.1e-28 129.4 119 55.5
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 3.1e-28 129.4 108 59.3
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 3.1e-28 129.4 104 57.7
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 3.1e-28 129.4 104 58.7
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 4.0e-28 129.0 122 55.7
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 4.0e-28 129.0 100 64.0
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 4.0e-28 129.0 112 56.2
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 4.0e-28 129.0 104 60.6
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 6.8e-28 128.3 115 57.4
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 8.9e-28 127.9 112 57.1
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 1.2e-27 127.5 122 54.9
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 1.2e-27 127.5 100 61.0
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 2.0e-27 126.7 104 61.5
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 2.6e-27 126.3 124 55.6
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 2.6e-27 126.3 115 57.4
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 3.4e-27 125.9 119 56.3
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 3.4e-27 125.9 119 56.3
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 3.4e-27 125.9 104 56.7
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 5.8e-27 125.2 104 59.6
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 5.8e-27 125.2 118 51.7
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 5.8e-27 125.2 118 51.7
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 7.6e-27 124.8 80 71.2
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 7.6e-27 124.8 80 71.2
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 7.6e-27 124.8 115 55.7
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 7.6e-27 124.8 119 56.3
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 7.6e-27 124.8 120 54.2
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 9.9e-27 124.4 99 60.6
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 9.9e-27 124.4 104 57.7
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 1.3e-26 124.0 104 54.8
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.7e-26 123.6 120 53.3
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 2.2e-26 123.2 89 66.3
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 2.2e-26 123.2 119 52.1
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 1.1e-25 120.9 80 71.2
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 1.1e-25 120.9 111 55.0
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 1.4e-25 120.6 139 49.6
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 1.4e-25 120.6 112 53.6
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 1.4e-25 120.6 111 55.0
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 1.9e-25 120.2 111 55.0
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 1.9e-25 120.2 97 58.8
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.9e-25 120.2 116 51.7
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 1.9e-25 120.2 99 59.6
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 2.4e-25 119.8 111 54.1
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 3.2e-25 119.4 80 70.0
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 3.2e-25 119.4 120 50.8
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 7.1e-25 118.2 110 54.5
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 9.2e-25 117.9 112 53.6
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 9.2e-25 117.9 115 53.9
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.6e-24 117.1 123 51.2
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 1.6e-24 117.1 112 51.8
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 3.5e-24 115.9 107 56.1
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 3.5e-24 115.9 110 57.3
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 4.6e-24 115.5 112 51.8
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 6.0e-24 115.2 76 69.7
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 6.0e-24 115.2 112 51.8
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.0e-23 114.4 118 51.7
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.0e-23 114.4 118 51.7
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 1.3e-23 114.0 110 51.8
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 1.7e-23 113.6 120 54.2
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 1.7e-23 113.6 110 55.5
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 2.3e-23 113.2 81 64.2
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 5.1e-23 112.1 106 51.9
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 6.6e-23 111.7 124 50.0
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 6.6e-23 111.7 104 54.8
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 1.1e-22 110.9 93 60.2
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.5e-22 110.5 116 49.1
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.5e-22 110.5 108 52.8
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 9.6e-22 107.8 97 51.5
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 1.8e-20 103.6 102 52.9
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 1.8e-20 103.6 84 59.5
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 3.1e-20 102.8 97 52.6
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 4.4e-19 99.0 97 46.4
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 9.9e-19 97.8 85 56.5
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 1.3e-18 97.4 130 43.8
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 3.8e-18 95.9 106 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 1.1e-17 94.4 110 47.3
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 3.2e-17 92.8 68 63.2
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 4.2e-17 92.4 87 52.9
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.2e-16 90.9 83 49.4
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 3.9e-15 85.9 53 75.5
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 6.6e-15 85.1 101 46.5
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 2.2e-10 70.1 74 48.6
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 1.3e-07 60.8 87 37.9
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 1.8e-07 60.5 117 34.2
ECA233G0490 Erigeron canadensis HOM05D003678 ORTHO05D004340 2.3e-07 60.1 81 40.7


User provided reference genes

Program Settings