Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 1.6e-200 702.6 357 100.0
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 2.3e-191 672.2 349 97.7
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 2.5e-190 668.7 350 97.7
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 3.6e-189 664.8 360 96.1
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 8.0e-189 663.7 351 96.9
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 1.0e-188 663.3 358 95.5
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 7.3e-182 640.6 358 91.6
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 1.1e-180 636.7 358 92.5
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 5.1e-175 617.8 346 90.5
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 2.4e-169 599.0 357 84.9
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 2.1e-168 595.9 353 86.1
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 1.0e-167 593.6 353 84.7
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 6.6e-167 590.9 354 85.6
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 8.6e-167 590.5 356 83.4
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 6.6e-151 537.7 358 78.5
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 4.0e-140 501.9 351 72.6
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 5.5e-137 491.5 352 71.9
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 7.9e-136 487.6 351 71.5
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 1.5e-134 483.4 370 69.2
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.5e-134 483.4 327 74.6
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 1.9e-134 483.0 348 71.8
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 1.9e-134 483.0 358 72.1
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 4.3e-134 481.9 346 71.4
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 2.8e-133 479.2 346 71.1
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 2.8e-133 479.2 349 70.5
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 2.8e-133 479.2 319 75.2
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 6.3e-133 478.0 358 69.8
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 2.4e-132 476.1 392 65.1
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 4.1e-132 475.3 385 67.0
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 5.3e-132 474.9 345 70.7
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 1.5e-131 473.4 338 70.7
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 1.1e-129 467.2 351 69.2
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 1.1e-129 467.2 369 66.4
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 3.2e-129 465.7 361 68.7
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 1.3e-127 460.3 364 66.5
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 1.3e-127 460.3 373 66.2
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 3.9e-127 458.8 357 68.9
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 6.7e-127 458.0 320 70.6
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 8.7e-127 457.6 358 67.0
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 8.7e-127 457.6 318 70.8
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 1.1e-126 457.2 342 67.5
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 4.3e-126 455.3 368 66.6
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 1.6e-125 453.4 319 69.0
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 1.6e-125 453.4 334 67.4
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 4.8e-125 451.8 356 67.1
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 6.3e-125 451.4 358 66.5
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 8.2e-125 451.1 354 66.1
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 6.9e-124 448.0 357 65.5
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 9.1e-124 447.6 305 71.8
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 2.6e-123 446.0 372 65.3
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 4.5e-123 445.3 376 62.2
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 4.5e-123 445.3 346 68.2
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 5.9e-123 444.9 303 71.9
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 1.0e-122 444.1 356 65.2
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 2.9e-122 442.6 344 65.1
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 3.8e-122 442.2 362 64.6
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 5.0e-122 441.8 374 64.4
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 6.5e-122 441.4 352 65.9
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 8.5e-122 441.0 327 69.4
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 1.9e-121 439.9 402 58.7
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 4.2e-121 438.7 343 66.5
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 4.2e-121 438.7 356 65.4
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 9.4e-121 437.6 330 65.5
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 9.4e-121 437.6 375 60.5
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 1.6e-120 436.8 317 69.1
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 3.6e-120 435.6 366 63.4
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 1.4e-119 433.7 362 63.5
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 5.1e-119 431.8 352 63.4
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 2.6e-118 429.5 344 64.5
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 4.4e-118 428.7 363 62.3
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 9.7e-118 427.6 355 63.9
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 3.1e-116 422.5 309 68.0
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 6.9e-116 421.4 304 65.5
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 9.1e-116 421.0 303 68.0
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 5.9e-115 418.3 376 58.2
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 1.0e-114 417.5 361 60.4
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 2.2e-114 416.4 320 66.2
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 6.5e-114 414.8 397 56.7
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 2.5e-113 412.9 328 61.9
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 7.7e-107 391.3 380 58.4
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 3.8e-106 389.0 273 69.6
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 1.2e-104 384.0 356 59.3
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 1.8e-103 380.2 337 58.8
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 2.2e-101 373.2 327 56.9
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 3.7e-101 372.5 288 64.9
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 3.1e-100 369.4 367 54.8
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 1.3e-98 364.0 321 56.7
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.9e-97 360.1 307 59.3
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.9e-97 360.1 307 59.3
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 4.2e-97 359.0 321 55.5
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 8.0e-96 354.8 304 60.2
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 8.8e-95 351.3 185 96.8
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 2.0e-94 350.1 290 63.4
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 4.4e-94 349.0 295 62.7
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 5.7e-94 348.6 297 60.3
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 1.3e-93 347.4 233 74.2
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 1.2e-91 340.9 289 60.9
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 2.0e-91 340.1 310 55.5
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 4.1e-84 315.8 329 52.9
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 4.7e-80 302.4 371 50.7
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 4.3e-73 279.3 169 79.9
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 2.1e-72 276.9 350 47.7
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 8.0e-72 275.0 167 80.8
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 4.4e-70 269.2 172 75.0
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 1.0e-66 258.1 261 54.0
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 1.9e-65 253.8 445 37.8
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 7.1e-60 235.3 401 38.9
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 8.9e-55 218.4 128 81.2
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 2.0e-54 217.2 169 63.3
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 2.4e-44 183.7 202 51.0
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 7.1e-36 155.6 137 60.6
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 7.1e-28 129.0 96 66.7
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 2.1e-19 100.9 240 33.3
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 2.3e-18 97.4 372 27.2
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 6.3e-16 89.4 57 77.2
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 6.9e-15 85.9 50 78.0
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 5.5e-12 76.3 147 31.3
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 2.8e-08 63.9 195 28.7
SalBow6G7050 Salvia bowleyana HOM05D007129 ORTHO05D008680 2.8e-08 63.9 108 39.8
Sopen03g032940 Solanum pennellii HOM05D007129 ORTHO05D008680 1.8e-07 61.2 168 31.0
Solyc03g113880.4 Solanum lycopersicum HOM05D007129 ORTHO05D008680 3.1e-07 60.5 168 30.4
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 2.0e-06 57.8 115 36.5
PGSC0003DMG401024472 Solanum tuberosum HOM05D007129 ORTHO05D008680 3.4e-06 57.0 104 36.5
CAN.G853.11 Capsicum annuum HOM05D007129 ORTHO05D008680 4.5e-06 56.6 104 36.5
Peaxi162Scf00017g02522 Petunia axillaris HOM05D007129 ORTHO05D008680 5.9e-06 56.2 104 36.5
TWI15G0302 Tripterygium wilfordii HOM05D007129 ORTHO05D008680 7.7e-06 55.8 115 35.7
vmacro16590 Vaccinium macrocarpon HOM05D007129 ORTHO05D008680 7.7e-06 55.8 115 36.5


User provided reference genes

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