Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26025 Brassica carinata HOM05D004026 ORTHO05D004712 3.0e-54 214.9 109 100.0
BolC5t30689H Brassica oleracea HOM05D004026 ORTHO05D004712 4.1e-51 204.5 109 96.3
BcaB07g32108 Brassica carinata HOM05D004026 ORTHO05D004712 3.2e-40 168.3 109 85.3
A06p17220 Brassica napus HOM05D004026 ORTHO05D004712 3.2e-40 168.3 109 85.3
BraA06t24824Z Brassica rapa HOM05D004026 ORTHO05D004712 3.2e-40 168.3 109 85.3
Sp1g18830 Schrenkiella parvula HOM05D004026 ORTHO05D004712 1.2e-39 166.4 109 84.4
AL1G34240 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 1.6e-39 166.0 108 84.3
AT1G21190 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 1.6e-39 166.0 109 83.5
CARHR021640 Cardamine hirsuta HOM05D004026 ORTHO05D004712 1.6e-39 166.0 108 84.3
Aa31LG7G5300 Aethionema arabicum HOM05D004026 ORTHO05D004712 3.6e-39 164.9 109 82.6
Carub.0001s2062 Capsella rubella HOM05D004026 ORTHO05D004712 3.6e-39 164.9 109 82.6
C05p19920 Brassica napus HOM05D004026 ORTHO05D004712 4.7e-39 164.5 82 100.0
BcaB02g07078 Brassica carinata HOM05D004026 ORTHO05D004712 2.3e-38 162.2 109 80.7
BcaC08g45508 Brassica carinata HOM05D004026 ORTHO05D004712 2.3e-38 162.2 109 80.7
BcaC08g47186 Brassica carinata HOM05D004026 ORTHO05D004712 2.3e-38 162.2 109 79.8
A07p28330 Brassica napus HOM05D004026 ORTHO05D004712 2.3e-38 162.2 109 80.7
A07p42450 Brassica napus HOM05D004026 ORTHO05D004712 2.3e-38 162.2 109 79.8
C06p31770 Brassica napus HOM05D004026 ORTHO05D004712 2.3e-38 162.2 109 80.7
C06p51010 Brassica napus HOM05D004026 ORTHO05D004712 2.3e-38 162.2 109 79.8
BolC6t38306H Brassica oleracea HOM05D004026 ORTHO05D004712 2.3e-38 162.2 109 80.7
BolC6t40126H Brassica oleracea HOM05D004026 ORTHO05D004712 2.3e-38 162.2 109 79.8
BraA07t30470Z Brassica rapa HOM05D004026 ORTHO05D004712 2.3e-38 162.2 109 80.7
BraA07t31770Z Brassica rapa HOM05D004026 ORTHO05D004712 2.3e-38 162.2 109 79.8
Aa31LG4G6900 Aethionema arabicum HOM05D004026 ORTHO05D004712 5.2e-38 161.0 109 80.7
CARHR070370 Cardamine hirsuta HOM05D004026 ORTHO05D004712 1.5e-37 159.5 107 80.4
BcaB05g25014 Brassica carinata HOM05D004026 ORTHO05D004712 2.0e-37 159.1 106 80.2
Carub.0002s2374 Capsella rubella HOM05D004026 ORTHO05D004712 2.6e-37 158.7 109 78.0
Sp5g31990 Schrenkiella parvula HOM05D004026 ORTHO05D004712 2.6e-37 158.7 106 80.2
Thhalv10019321m.g Eutrema salsugineum HOM05D004026 ORTHO05D004712 3.3e-37 158.3 106 80.2
BcaC03g15707 Brassica carinata HOM05D004026 ORTHO05D004712 4.4e-37 157.9 106 80.2
A02p20950 Brassica napus HOM05D004026 ORTHO05D004712 4.4e-37 157.9 106 80.2
C02p34120 Brassica napus HOM05D004026 ORTHO05D004712 4.4e-37 157.9 106 80.2
BolC2t09428H Brassica oleracea HOM05D004026 ORTHO05D004712 4.4e-37 157.9 106 80.2
BraA02t07126Z Brassica rapa HOM05D004026 ORTHO05D004712 4.4e-37 157.9 106 80.2
AL2G36980 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 5.7e-37 157.5 107 79.4
AT1G76860 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 1.7e-36 156.0 107 78.5
Gohir.A02G112705 Gossypium hirsutum HOM05D004026 ORTHO05D004712 4.8e-36 154.5 109 74.3
Glyma.02G082300 Glycine max HOM05D004026 ORTHO05D004712 8.2e-36 153.7 109 75.2
THA.LOC104813712 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 8.2e-36 153.7 109 75.2
QL09p017237 Quercus lobata HOM05D004026 ORTHO05D004712 1.1e-35 153.3 108 74.1
SEGI_01220 Sequoiadendron giganteum HOM05D004026 ORTHO05D004712 1.4e-35 152.9 109 75.2
CANSAT25G0019 Cannabis sativa HOM05D004026 ORTHO05D004712 1.8e-35 152.5 109 74.3
ClCG08G006960 Citrullus lanatus HOM05D004026 ORTHO05D004712 1.8e-35 152.5 109 73.4
Gorai.002G055500 Gossypium raimondii HOM05D004026 ORTHO05D004712 1.8e-35 152.5 109 73.4
Phvul.004G095700 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 1.8e-35 152.5 109 74.3
Phvul.004G129000 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 1.8e-35 152.5 109 74.3
Sed0010346 Sechium edule HOM05D004026 ORTHO05D004712 1.8e-35 152.5 109 73.4
THA.LOC104812039 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 1.8e-35 152.5 109 74.3
Glyma.16G167900 Glycine max HOM05D004026 ORTHO05D004712 2.4e-35 152.1 109 73.4
Lj2g0026454 Lotus japonicus HOM05D004026 ORTHO05D004712 2.4e-35 152.1 109 73.4
Eucgr.F02710 Eucalyptus grandis HOM05D004026 ORTHO05D004712 3.1e-35 151.8 109 74.3
Gohir.A05G243000 Gossypium hirsutum HOM05D004026 ORTHO05D004712 3.1e-35 151.8 109 74.3
Gohir.D05G244500 Gossypium hirsutum HOM05D004026 ORTHO05D004712 3.1e-35 151.8 109 74.3
Gorai.009G253600 Gossypium raimondii HOM05D004026 ORTHO05D004712 3.1e-35 151.8 109 74.3
PGR042G0059 Punica granatum HOM05D004026 ORTHO05D004712 3.1e-35 151.8 109 74.3
CAN.G249.12 Capsicum annuum HOM05D004026 ORTHO05D004712 4.1e-35 151.4 109 72.5
Duzib116G0179 Durio zibethinus HOM05D004026 ORTHO05D004712 4.1e-35 151.4 109 73.4
Nn5g28727 Nelumbo nucifera HOM05D004026 ORTHO05D004712 4.1e-35 151.4 109 73.4
Solyc11g005370.2 Solanum lycopersicum HOM05D004026 ORTHO05D004712 4.1e-35 151.4 109 72.5
Sopen11g001380 Solanum pennellii HOM05D004026 ORTHO05D004712 4.1e-35 151.4 109 72.5
PGSC0003DMG400003988 Solanum tuberosum HOM05D004026 ORTHO05D004712 4.1e-35 151.4 109 72.5
Cpa.g.sc2145.2 Carica papaya HOM05D004026 ORTHO05D004712 5.3e-35 151.0 109 72.5
Dinv41090 Davidia involucrata HOM05D004026 ORTHO05D004712 5.3e-35 151.0 109 72.5
Nitab4.5_0000964g0020 Nicotiana tabacum HOM05D004026 ORTHO05D004712 5.3e-35 151.0 109 71.6
Hund26698 Selenicereus undatus HOM05D004026 ORTHO05D004712 5.3e-35 151.0 109 72.5
TPR.G8174 Trifolium pratense HOM05D004026 ORTHO05D004712 5.3e-35 151.0 106 75.5
Atru.chr13.2143 Acer truncatum HOM05D004026 ORTHO05D004712 7.0e-35 150.6 109 73.4
Ciclev10002950m.g Citrus clementina HOM05D004026 ORTHO05D004712 7.0e-35 150.6 109 73.4
Cc10_g14760 Coffea canephora HOM05D004026 ORTHO05D004712 7.0e-35 150.6 108 74.1
MELO3C008344.2 Cucumis melo HOM05D004026 ORTHO05D004712 7.0e-35 150.6 109 73.4
Hma1.2p1_0105F.1_g050760 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 7.0e-35 150.6 109 73.4
Nn1g06097 Nelumbo nucifera HOM05D004026 ORTHO05D004712 7.0e-35 150.6 109 73.4
Peaxi162Scf00583g00530 Petunia axillaris HOM05D004026 ORTHO05D004712 7.0e-35 150.6 108 73.1
Sed0019016 Sechium edule HOM05D004026 ORTHO05D004712 7.0e-35 150.6 109 72.5
TAR628G0743 Trochodendron aralioides HOM05D004026 ORTHO05D004712 7.0e-35 150.6 109 73.4
Aqoxy5G02098 Aquilegia oxysepala HOM05D004026 ORTHO05D004712 9.1e-35 150.2 109 73.4
MD05G1024000 Malus domestica HOM05D004026 ORTHO05D004712 9.1e-35 150.2 109 73.4
Manes.18G091400 Manihot esculenta HOM05D004026 ORTHO05D004712 9.1e-35 150.2 109 72.5
PSO541G1854 Papaver somniferum HOM05D004026 ORTHO05D004712 9.1e-35 150.2 106 75.5
PSO675G7538 Papaver somniferum HOM05D004026 ORTHO05D004712 9.1e-35 150.2 106 75.5
Potri.005G191600 Populus trichocarpa HOM05D004026 ORTHO05D004712 9.1e-35 150.2 109 72.5
Prupe.8G028400 Prunus persica HOM05D004026 ORTHO05D004712 9.1e-35 150.2 109 72.5
Sabra05G0146400 Salix brachista HOM05D004026 ORTHO05D004712 9.1e-35 150.2 109 72.5
TWI34G0684 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 9.1e-35 150.2 109 73.4
Lalb_Chr01g0009621 Lupinus albus HOM05D004026 ORTHO05D004712 1.2e-34 149.8 106 74.5
MD10G1024500 Malus domestica HOM05D004026 ORTHO05D004712 1.2e-34 149.8 109 72.5
Medtr4g083170 Medicago truncatula HOM05D004026 ORTHO05D004712 1.2e-34 149.8 106 74.5
Psat7g153480 Pisum sativum HOM05D004026 ORTHO05D004712 1.2e-34 149.8 106 74.5
Zm00001eb146730 Zea mays HOM05D004026 ORTHO05D004712 1.2e-34 149.8 108 73.1
Ah.05g167900 Amaranthus hybridus HOM05D004026 ORTHO05D004712 1.6e-34 149.4 108 72.2
arahy.Tifrunner.gnm1.ann1.9PQ1GY Arachis hypogaea HOM05D004026 ORTHO05D004712 1.6e-34 149.4 108 72.2
arahy.Tifrunner.gnm1.ann1.XJQY2Y Arachis hypogaea HOM05D004026 ORTHO05D004712 1.6e-34 149.4 108 72.2
EL10Ac1g01537 Beta vulgaris HOM05D004026 ORTHO05D004712 1.6e-34 149.4 108 72.2
Migut.C01015 Erythranthe guttata HOM05D004026 ORTHO05D004712 1.6e-34 149.4 109 73.4
Gohir.D03G060607 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.6e-34 149.4 109 72.5
Mapoly0008s0084 Marchantia polymorpha HOM05D004026 ORTHO05D004712 1.6e-34 149.4 109 72.5
Rhsim06G0071000 Rhododendron simsii HOM05D004026 ORTHO05D004712 1.6e-34 149.4 109 72.5
Rhsim06G0135800 Rhododendron simsii HOM05D004026 ORTHO05D004712 1.6e-34 149.4 109 72.5
Sabra02G0054100 Salix brachista HOM05D004026 ORTHO05D004712 1.6e-34 149.4 109 72.5
TAR381G0202 Trochodendron aralioides HOM05D004026 ORTHO05D004712 1.6e-34 149.4 109 72.5
CSS0019157 Camellia sinensis var. sinensis HOM05D004026 ORTHO05D004712 2.0e-34 149.1 109 72.5
Migut.N03226 Erythranthe guttata HOM05D004026 ORTHO05D004712 2.0e-34 149.1 109 72.5
Lj1g0021939 Lotus japonicus HOM05D004026 ORTHO05D004712 2.0e-34 149.1 107 72.9
Thecc.08G150600 Theobroma cacao HOM05D004026 ORTHO05D004712 2.0e-34 149.1 109 71.6
Actinidia06668 Actinidia chinensis HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
CDE06G1840 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
CDE08G0955 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
ECA236G1806 Erigeron canadensis HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
FvH4_2g13861 Fragaria vesca HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
FAN15G1801 Fragaria x ananassa HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
FAN20G2578 Fragaria x ananassa HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
FAN27G2615 Fragaria x ananassa HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
HanXRQChr06g0182631 Helianthus annuus HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
HanXRQChr11g0339331 Helianthus annuus HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
Lsat_1_v5_gn_7_71840 Lactuca sativa HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
MBI09_g18621_MAGBIO Magnolia biondii HOM05D004026 ORTHO05D004712 2.7e-34 148.7 106 73.6
QL02p024017 Quercus lobata HOM05D004026 ORTHO05D004712 2.7e-34 148.7 107 72.0
RcHm_v2.0_Chr6g0275571 Rosa chinensis HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
unitig_744.g24567 Utricularia gibba HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 72.5
HPP92_016150 Vanilla planifolia HOM05D004026 ORTHO05D004712 2.7e-34 148.7 109 71.6
Duzib093G0799 Durio zibethinus HOM05D004026 ORTHO05D004712 3.5e-34 148.3 109 71.6
FAN24G0951 Fragaria x ananassa HOM05D004026 ORTHO05D004712 3.5e-34 148.3 109 70.6
Lalb_Chr03g0035271 Lupinus albus HOM05D004026 ORTHO05D004712 3.5e-34 148.3 106 73.6
Peaxi162Scf00025g02218 Petunia axillaris HOM05D004026 ORTHO05D004712 3.5e-34 148.3 108 72.2
Potri.002G068800 Populus trichocarpa HOM05D004026 ORTHO05D004712 3.5e-34 148.3 109 71.6
TPR.G14063 Trifolium pratense HOM05D004026 ORTHO05D004712 3.5e-34 148.3 106 73.6
TAR625G0830 Trochodendron aralioides HOM05D004026 ORTHO05D004712 3.5e-34 148.3 109 71.6
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis HOM05D004026 ORTHO05D004712 5.9e-34 147.5 107 71.0
Dinv25856 Davidia involucrata HOM05D004026 ORTHO05D004712 5.9e-34 147.5 109 70.6
Dinv09936 Davidia involucrata HOM05D004026 ORTHO05D004712 7.7e-34 147.1 109 70.6
Manes.02G178900 Manihot esculenta HOM05D004026 ORTHO05D004712 7.7e-34 147.1 109 70.6
Pp3c24_12260 Physcomitrium patens HOM05D004026 ORTHO05D004712 7.7e-34 147.1 109 71.6
unitig_21.g20177 Utricularia gibba HOM05D004026 ORTHO05D004712 7.7e-34 147.1 109 71.6
SalBow6G5104 Salvia bowleyana HOM05D004026 ORTHO05D004712 1.0e-33 146.7 109 70.6
Oeu046026.1 Olea europaea HOM05D004026 ORTHO05D004712 1.3e-33 146.4 109 70.6
ATR0772G183 Amborella trichopoda HOM05D004026 ORTHO05D004712 1.7e-33 146.0 104 74.0
Hma1.2p1_0006F.1_g004910 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 1.7e-33 146.0 109 69.7
SMO169G0100 Selaginella moellendorffii HOM05D004026 ORTHO05D004712 2.2e-33 145.6 109 69.7
Os01g0866700 Oryza sativa ssp. japonica HOM05D004026 ORTHO05D004712 2.9e-33 145.2 104 73.1
DCAR_014432 Daucus carota HOM05D004026 ORTHO05D004712 1.9e-32 142.5 104 72.1
MCO12G407 Micromonas commoda HOM05D004026 ORTHO05D004712 2.5e-32 142.1 104 70.2
Haze_17748 Corylus avellana HOM05D004026 ORTHO05D004712 5.5e-32 141.0 126 63.5
Cre16.g662300 Chlamydomonas reinhardtii HOM05D004026 ORTHO05D004712 4.7e-31 137.9 103 68.0
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 4.0e-30 134.8 105 68.6
CsaV3_1G019700 Cucumis sativus L. HOM05D004026 ORTHO05D004712 2.0e-29 132.5 127 59.8
Cfa018326 Carpinus fangiana HOM05D004026 ORTHO05D004712 3.4e-29 131.7 135 59.3
PRCOL_00001118 Prasinoderma coloniale HOM05D004026 ORTHO05D004712 7.7e-26 120.6 104 57.7
AUR62026713 Chenopodium quinoa HOM05D004026 ORTHO05D004712 6.5e-25 117.5 108 60.2
CsaV3_6G005290 Cucumis sativus L. HOM05D004026 ORTHO05D004712 5.5e-24 114.4 119 56.3
GSVIVG01034520001 Vitis vinifera HOM05D004026 ORTHO05D004712 7.2e-24 114.0 88 67.0
CiPaw.16G013200 Carya illinoinensis HOM05D004026 ORTHO05D004712 2.8e-23 112.1 84 70.2
Rhsim10G0141800 Rhododendron simsii HOM05D004026 ORTHO05D004712 6.1e-23 110.9 82 70.7
Nitab4.5_0000004g0160 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.0e-22 110.2 82 69.5
TWI60G1706 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 1.4e-22 109.8 82 69.5
Ca_28109_v3 Cicer arietinum L. HOM05D004026 ORTHO05D004712 4.0e-22 108.2 79 70.9
MD10G1024600 Malus domestica HOM05D004026 ORTHO05D004712 4.0e-22 108.2 82 68.3
Prupe.3G148200 Prunus persica HOM05D004026 ORTHO05D004712 4.0e-22 108.2 82 68.3
AUR62013577 Chenopodium quinoa HOM05D004026 ORTHO05D004712 8.9e-22 107.1 81 69.1
Haze_27742 Corylus avellana HOM05D004026 ORTHO05D004712 1.5e-21 106.3 101 55.4
Nitab4.5_0010284g0010 Nicotiana tabacum HOM05D004026 ORTHO05D004712 2.0e-21 105.9 63 82.5
Sc02g0004120 Simmondsia chinensis HOM05D004026 ORTHO05D004712 4.4e-21 104.8 60 85.0
SHI20484 Sapria himalayana HOM05D004026 ORTHO05D004712 1.3e-20 103.2 62 82.3
Nitab4.5_0002064g0050 Nicotiana tabacum HOM05D004026 ORTHO05D004712 2.2e-20 102.4 58 82.8
MSTRG.22373 Avicennia marina HOM05D004026 ORTHO05D004712 3.1e-19 98.6 81 60.5
SalBow4G0880 Salvia bowleyana HOM05D004026 ORTHO05D004712 3.1e-19 98.6 105 53.3
vmacro12827 Vaccinium macrocarpon HOM05D004026 ORTHO05D004712 5.4e-19 97.8 148 43.9
CiPaw.15G016800 Carya illinoinensis HOM05D004026 ORTHO05D004712 9.5e-16 87.0 52 82.7
Oeu011940.1 Olea europaea HOM05D004026 ORTHO05D004712 9.5e-16 87.0 52 82.7
RcHm_v2.0_Chr6g0275581 Rosa chinensis HOM05D004026 ORTHO05D004712 2.1e-15 85.9 52 82.7
Glyma.10G120000 Glycine max HOM05D004026 ORTHO05D004712 4.7e-15 84.7 72 61.1
Cfa023910 Carpinus fangiana HOM05D004026 ORTHO05D004712 1.0e-14 83.6 99 44.4
CBR_g88561 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-08 61.6 39 74.4


User provided reference genes

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