Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2825.8 1453 100.0
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2817.7 1463 99.3
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2801.5 1463 98.6
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2767.6 1453 97.6
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2766.5 1463 97.5
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2662.1 1457 93.8
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2661.7 1457 93.0
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2650.9 1465 93.0
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2648.6 1455 93.3
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2644.0 1463 92.9
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2643.6 1464 92.9
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2640.9 1468 92.4
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2629.7 1459 92.5
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2619.3 1461 91.8
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2610.9 1462 91.9
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2578.5 1465 90.6
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2573.5 1459 90.3
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2494.9 1333 97.2
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2361.6 1437 85.1
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2345.1 1470 82.7
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2194.9 1493 76.1
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2183.7 1489 75.5
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2176.0 1493 75.4
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2174.1 1493 75.2
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2172.9 1492 75.7
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2167.1 1495 75.7
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2165.6 1495 75.2
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2152.9 1493 75.0
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2136.3 1497 74.1
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2134.0 1491 73.5
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2133.6 1493 73.5
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2128.2 1493 74.0
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2118.6 1496 73.3
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2117.8 1485 73.1
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2112.4 1495 73.4
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2112.4 1494 73.1
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2111.6 1491 73.3
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2107.8 1489 73.1
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2106.3 1478 72.9
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2103.9 1484 73.2
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2098.9 1484 73.0
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2096.6 1484 72.9
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2093.5 1477 73.3
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2089.7 1486 72.3
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2088.2 1486 72.4
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2085.5 1486 72.7
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2081.6 1491 72.0
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2080.4 1485 72.7
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2079.7 1492 72.2
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2078.5 1481 72.3
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2075.1 1485 71.9
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2074.3 1485 72.1
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2063.9 1476 71.6
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2057.0 1486 71.5
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2057.0 1526 70.4
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2055.4 1486 71.1
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2053.1 1486 71.0
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2048.1 1486 70.7
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2046.6 1486 70.9
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2046.2 1485 71.3
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2034.6 1481 70.7
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2034.6 1437 73.1
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2033.8 1481 71.0
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2033.8 1489 70.4
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2030.0 1487 70.3
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2028.1 1484 70.7
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2025.8 1494 70.4
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2024.2 1489 70.6
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2020.7 1548 68.9
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2020.4 1488 70.4
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2016.5 1527 68.6
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2014.2 1483 70.1
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2011.1 1480 70.0
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2010.7 1478 70.4
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2003.8 1487 69.7
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2003.8 1488 69.3
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2002.3 1485 69.6
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1997.2 1491 70.0
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 1983.4 1563 67.1
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1978.4 1539 67.3
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1971.1 1493 68.7
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1965.7 1485 69.0
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1964.1 1488 68.4
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1958.3 1472 68.5
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1951.8 1480 67.7
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1933.3 1482 68.1
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1928.3 1482 67.8
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1924.8 1490 67.0
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1918.3 1476 67.8
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1912.1 1489 67.4
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1880.9 1465 67.1
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1876.3 1570 64.1
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1864.7 1499 65.6
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1840.1 1304 74.2
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1822.8 1304 73.2
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1812.7 1300 72.8
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1794.6 1469 64.1
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1793.5 1279 72.9
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1788.5 1582 62.3
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1724.1 1477 61.1
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1721.4 1209 73.8
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1720.7 1298 69.6
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1683.7 1388 66.5
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1659.4 1419 62.0
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1639.8 1430 59.9
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1635.5 1436 61.8
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1508.0 1525 54.4
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1505.7 1512 54.4
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1504.6 988 77.5
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1379.8 1395 56.1
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1312.4 1207 57.7
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1307.7 1083 65.5
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1252.3 1293 53.4
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1239.6 1356 52.9
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1198.0 1356 51.8
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 2.3e-303 1046.2 1256 50.6
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.1e-291 1006.5 735 73.2
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 7.6e-286 988.0 746 68.6
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 5.1e-282 975.3 849 60.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 3.3e-249 866.3 771 61.2
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 1.4e-242 844.3 882 55.8
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 1.1e-231 808.1 705 61.6
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.3e-226 790.4 578 68.0
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 2.0e-225 787.3 903 52.3
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 7.0e-199 699.1 608 60.0
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.0e-198 697.6 470 78.7
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.6e-190 669.8 597 61.1
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.6e-166 591.7 362 78.7
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 3.6e-163 580.5 736 46.1
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 2.1e-155 554.7 435 69.4
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 7.9e-150 536.2 473 64.1
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 2.1e-134 485.0 543 52.7
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.4e-114 418.3 748 39.8
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 9.8e-100 369.8 1823 24.8
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.3e-91 342.8 230 77.4
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 4.1e-90 337.8 1339 28.2
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.7e-86 324.3 444 44.6
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 8.9e-85 320.1 1613 25.2
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 1.2e-81 309.7 214 72.9
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.9e-75 287.7 396 46.0
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.2e-73 283.1 225 63.1
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.8e-69 269.2 238 63.0
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 3.4e-68 265.0 155 76.8
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 4.4e-68 264.6 152 79.6
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.6e-62 246.1 195 62.1
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.8e-62 245.4 267 52.8
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 3.6e-46 191.8 102 87.3
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 1.8e-45 189.5 1341 23.5
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 3.2e-42 178.7 155 61.3
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.3e-40 173.3 336 39.0
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 7.4e-39 167.5 186 51.1
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 5.8e-36 157.9 189 50.8
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 4.2e-34 151.8 130 60.8
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 3.5e-33 148.7 107 72.0
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 3.5e-33 148.7 218 47.2
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 1.1e-31 143.7 102 71.6
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.1e-26 127.1 131 52.7
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 2.7e-25 122.5 101 65.3
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 2.2e-22 112.8 55 89.1
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 6.9e-21 107.8 64 78.1
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 7.6e-20 104.4 131 49.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 7.6e-20 104.4 67 70.1
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.1e-15 90.5 110 52.7
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.7e-14 86.7 53 77.4
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.7e-14 86.7 53 77.4
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.6e-12 79.3 69 56.5
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 6.1e-09 68.2 35 82.9
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 1.0e-08 67.4 50 64.0


User provided reference genes

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