Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 0.0e+00 1598.9 866 100.0
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 0.0e+00 1598.9 866 100.0
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1560.4 866 97.9
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 0.0e+00 1535.8 867 95.4
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1520.0 867 95.3
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 0.0e+00 1444.9 877 86.1
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 0.0e+00 1441.0 872 91.3
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 0.0e+00 1419.1 874 84.6
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 0.0e+00 1408.7 853 88.5
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 0.0e+00 1407.5 878 83.9
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1405.2 878 83.8
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1388.6 874 83.0
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 0.0e+00 1330.9 832 82.8
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 0.0e+00 1330.5 825 83.6
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 0.0e+00 1303.5 832 82.1
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 0.0e+00 1256.1 857 77.7
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 0.0e+00 1081.6 824 72.2
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 2.0e-274 949.5 798 63.2
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 7.0e-272 941.0 859 59.7
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 1.3e-270 936.8 866 60.2
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 1.3e-270 936.8 801 62.8
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 2.9e-270 935.6 833 60.9
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 3.2e-269 932.2 831 60.2
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 1.6e-268 929.9 801 61.7
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 8.8e-267 924.1 808 61.8
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 2.8e-265 919.1 808 61.6
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 3.7e-265 918.7 815 60.9
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 4.8e-265 918.3 801 61.5
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 1.8e-264 916.4 807 61.2
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 7.0e-264 914.4 846 59.5
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 1.2e-263 913.7 804 60.8
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 2.9e-262 909.1 814 60.8
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 4.2e-261 905.2 815 60.4
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 4.7e-260 901.7 825 59.8
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 2.3e-259 899.4 812 60.5
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 4.8e-257 891.7 819 60.0
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 6.3e-257 891.3 870 58.0
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 3.1e-256 889.0 805 60.5
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 4.1e-256 888.6 804 60.2
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 7.0e-256 887.9 867 56.7
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.2e-255 887.1 867 57.7
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 2.0e-255 886.3 859 57.2
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 2.7e-255 885.9 805 59.4
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 2.7e-255 885.9 882 56.3
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 5.9e-255 884.8 840 57.6
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 5.9e-255 884.8 805 59.6
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 1.3e-254 883.6 860 57.2
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 2.2e-254 882.9 804 60.2
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 3.8e-254 882.1 845 57.5
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 3.8e-254 882.1 819 59.1
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 8.5e-254 880.9 843 57.2
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 3.2e-253 879.0 862 57.8
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 3.2e-253 879.0 839 57.8
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 4.2e-253 878.6 856 57.2
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 5.5e-253 878.2 804 58.6
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 9.4e-253 877.5 803 58.9
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 2.1e-252 876.3 800 60.8
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 2.7e-252 875.9 844 57.2
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 3.6e-252 875.5 805 59.5
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 3.6e-252 875.5 804 60.2
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 1.4e-251 873.6 879 55.9
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 3.0e-251 872.5 866 56.6
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 8.8e-251 870.9 814 58.0
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 1.2e-250 870.5 846 57.7
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 5.7e-250 868.2 839 57.3
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 9.8e-250 867.5 927 54.6
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 2.2e-249 866.3 814 57.7
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 1.2e-247 860.5 743 61.9
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 2.3e-246 856.3 842 57.0
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 9.5e-245 850.9 813 58.1
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 2.3e-243 846.3 809 57.4
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 4.0e-243 845.5 802 57.9
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 5.7e-242 841.6 819 58.2
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 2.8e-241 839.3 852 56.1
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 8.3e-241 837.8 847 56.6
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 1.1e-240 837.4 831 56.3
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 3.2e-240 835.9 826 55.1
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.2e-239 833.9 923 52.1
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 2.0e-239 833.2 868 54.1
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 3.5e-239 832.4 799 59.8
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 7.8e-239 831.2 861 54.9
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 6.6e-238 828.2 742 60.2
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 4.9e-233 812.0 740 58.6
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 5.4e-232 808.5 829 54.6
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 1.6e-231 807.0 797 57.1
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 6.6e-230 801.6 846 53.5
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 1.1e-229 800.8 560 77.5
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.1e-224 784.3 736 58.6
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 4.3e-221 772.3 989 48.0
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.3e-217 760.8 830 52.3
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 9.2e-216 754.6 805 52.0
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 4.3e-213 745.7 802 53.2
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 5.6e-213 745.3 834 52.4
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 9.3e-208 728.0 705 56.7
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 2.8e-204 716.5 889 49.3
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 3.6e-204 716.1 799 51.9
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 5.4e-200 702.2 878 48.1
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 5.4e-200 702.2 895 50.1
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 2.3e-182 643.7 791 48.2
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 1.3e-161 574.7 843 43.9
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 3.1e-155 553.5 898 41.9
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.8e-150 537.7 506 56.7
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 1.6e-135 488.0 847 39.8
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 7.0e-131 472.6 669 45.9
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 2.5e-128 464.2 874 38.7
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 1.6e-122 444.9 441 54.6
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.3e-105 387.9 351 56.4
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 2.2e-92 344.7 322 64.0
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 1.2e-85 322.4 996 30.4
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 3.9e-81 307.4 224 71.0
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 1.7e-76 292.0 450 42.4
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 3.8e-60 237.7 740 31.6
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 1.4e-46 192.6 345 37.1
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 5.5e-43 180.6 192 53.1
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 3.9e-41 174.5 107 78.5
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 4.1e-38 164.5 106 74.5
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 1.4e-33 149.4 237 40.5
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 3.2e-27 128.3 87 77.0
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 5.4e-22 110.9 146 41.1
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 9.1e-22 110.2 683 25.0
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.1e-19 103.2 73 69.9
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.1e-10 72.4 46 73.9
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 2.9e-07 62.0 74 37.8
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 1.1e-06 60.1 75 36.0
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 3.2e-06 58.5 75 36.0
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 4.1e-06 58.2 90 35.6
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 7.0e-06 57.4 174 26.4
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 9.2e-06 57.0 75 34.7


User provided reference genes

Program Settings