Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 1.1e-164 583.2 291 100.0
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 1.1e-164 583.2 291 100.0
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 2.5e-164 582.0 291 99.7
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 3.2e-159 565.1 291 96.9
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 7.1e-159 563.9 291 96.6
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 1.6e-150 536.2 293 92.2
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 2.9e-144 515.4 291 87.3
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 2.0e-137 492.7 294 83.3
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 4.5e-137 491.5 294 85.7
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.3e-136 490.0 295 83.4
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 2.2e-136 489.2 294 83.7
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 1.2e-134 483.4 291 83.5
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 4.9e-128 461.5 294 77.9
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 3.2e-119 432.2 292 73.6
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 3.9e-101 372.1 294 65.0
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 1.1e-100 370.5 294 63.9
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 1.1e-100 370.5 292 63.7
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 5.7e-100 368.2 292 63.4
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 1.7e-99 366.7 293 63.5
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.7e-99 366.7 291 63.6
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.8e-99 365.2 295 63.7
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 8.2e-99 364.4 294 62.9
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.8e-98 363.2 294 62.9
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 7.7e-97 357.8 291 61.5
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 1.3e-96 357.1 292 61.3
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.7e-96 356.7 293 61.8
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 6.5e-96 354.8 295 61.7
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.4e-95 353.6 294 61.6
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 2.7e-94 349.4 295 60.3
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 4.7e-94 348.6 292 59.9
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.0e-93 347.4 300 59.7
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 1.8e-93 346.7 291 61.2
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 1.8e-93 346.7 292 61.0
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.3e-93 346.3 294 61.6
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 4.4e-92 342.0 295 59.0
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.3e-91 340.5 291 60.1
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 1.3e-91 340.5 290 60.3
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 2.2e-91 339.7 292 59.9
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 4.8e-91 338.6 296 62.8
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.1e-90 337.4 235 67.7
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.1e-90 337.4 290 59.0
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.4e-90 337.0 294 57.8
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.4e-90 337.0 294 57.8
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 1.8e-90 336.7 280 62.5
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 4.1e-90 335.5 293 60.4
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 2.0e-89 333.2 291 59.5
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 7.7e-89 331.3 296 59.8
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 1.7e-88 330.1 292 58.2
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 2.2e-88 329.7 294 55.8
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 2.9e-88 329.3 287 58.2
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 6.5e-88 328.2 296 57.8
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 6.5e-88 328.2 296 57.8
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 6.5e-88 328.2 321 54.8
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 1.9e-87 326.6 349 52.7
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 2.5e-87 326.2 290 57.6
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 2.5e-87 326.2 287 57.8
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 2.5e-87 326.2 304 57.6
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 2.5e-87 326.2 290 56.9
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 5.5e-87 325.1 292 60.3
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 7.2e-87 324.7 276 60.9
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 9.4e-87 324.3 292 57.9
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 1.2e-86 323.9 290 57.9
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 3.6e-86 322.4 304 55.3
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 8.0e-86 321.2 294 59.2
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.4e-85 320.5 290 56.9
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.8e-85 320.1 264 62.1
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 2.3e-85 319.7 263 63.1
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 3.0e-85 319.3 293 55.3
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 3.0e-85 319.3 294 55.8
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 4.0e-85 318.9 297 57.2
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 6.7e-85 318.2 288 56.2
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.2e-84 317.4 280 58.2
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 1.5e-84 317.0 293 57.0
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.0e-84 316.6 281 58.4
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.0e-84 316.6 290 59.3
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 2.6e-84 316.2 290 55.5
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.3e-84 315.8 263 60.8
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 6.3e-83 311.6 321 52.3
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 8.3e-83 311.2 289 58.1
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 8.3e-83 311.2 293 56.3
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 2.4e-82 309.7 279 58.4
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 5.3e-82 308.5 293 56.7
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 7.0e-82 308.1 221 65.6
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 9.1e-82 307.8 269 57.6
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 9.1e-82 307.8 332 51.2
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.6e-81 307.0 295 56.6
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 2.0e-81 306.6 282 59.2
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 2.7e-81 306.2 260 59.2
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.9e-80 302.8 287 55.4
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 3.8e-80 302.4 299 55.5
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 2.5e-79 299.7 293 52.9
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 4.2e-79 298.9 293 54.6
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 1.8e-77 293.5 290 53.8
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 8.8e-77 291.2 207 67.1
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 3.4e-76 289.3 206 67.0
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.4e-76 288.9 256 58.6
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 5.7e-76 288.5 215 65.6
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 2.2e-75 286.6 275 55.3
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 6.3e-75 285.0 237 58.2
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 8.3e-75 284.6 297 52.2
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 5.9e-73 278.5 290 51.7
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 2.3e-72 276.6 228 61.8
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 1.1e-71 274.2 284 51.4
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.5e-71 273.9 226 61.1
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.6e-70 270.4 226 61.1
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.6e-65 253.8 256 53.9
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 7.8e-65 251.5 252 53.2
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 6.8e-61 238.4 282 47.2
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 4.6e-57 225.7 188 58.5
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 4.3e-55 219.2 205 56.1
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.9e-51 205.7 226 51.8
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.4e-50 204.1 205 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 2.4e-50 203.4 242 45.5
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 4.1e-50 202.6 234 50.9
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 1.6e-49 200.7 299 37.5
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 2.1e-49 200.3 287 42.2
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 2.7e-49 199.9 216 51.4
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 4.6e-49 199.1 218 50.5
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.5e-47 193.4 177 56.5
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 2.5e-47 193.4 148 64.9
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.5e-47 193.4 205 53.7
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 5.8e-44 182.2 272 42.3
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 1.7e-43 180.6 130 65.4
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 2.2e-43 180.3 122 68.9
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 8.3e-43 178.3 253 45.5
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 2.8e-38 163.3 114 65.8
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.6e-36 156.8 294 39.1
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 3.4e-36 156.4 205 45.9
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 9.9e-36 154.8 105 68.6
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 4.2e-34 149.4 170 50.0
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 1.1e-29 134.8 305 33.1
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 5.8e-28 129.0 86 72.1
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.2e-26 123.2 141 50.4
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 1.0e-24 118.2 199 40.2
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 6.6e-24 115.5 217 36.9
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.2e-17 94.7 172 38.4
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 1.0e-16 91.7 218 30.7
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 1.1e-15 88.2 256 28.1
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.4e-10 71.2 137 38.0
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 1.6e-06 57.8 59 55.9


User provided reference genes

Program Settings