Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 1.2e-275 952.6 488 100.0
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 2.5e-273 944.9 488 99.4
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.6e-272 942.2 488 99.6
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.7e-253 879.0 488 93.2
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 1.3e-250 869.4 488 92.4
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 9.1e-244 846.7 488 89.5
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 3.0e-218 761.9 463 81.9
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.6e-208 729.6 464 79.3
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 3.1e-199 698.7 538 71.6
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 1.6e-195 686.4 436 80.3
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 2.3e-194 682.6 491 76.6
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 3.5e-187 658.7 498 73.9
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 1.4e-183 646.7 493 74.0
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 3.4e-182 642.1 462 75.5
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 2.1e-179 632.9 499 72.5
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.8e-178 629.8 459 70.2
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 4.1e-175 618.6 498 71.7
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 1.2e-158 563.9 493 62.5
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.2e-157 559.7 487 64.9
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 2.0e-129 466.8 335 74.6
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 8.7e-85 318.5 447 43.6
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 8.1e-83 312.0 431 46.2
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 3.1e-82 310.1 477 39.8
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 4.0e-82 309.7 447 41.4
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.3e-82 309.3 489 40.1
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 6.9e-82 308.9 434 42.2
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.6e-81 307.0 493 41.2
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 4.5e-81 306.2 329 49.8
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 1.9e-79 300.8 449 41.9
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 7.1e-79 298.9 474 39.5
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 7.1e-79 298.9 447 41.2
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.6e-78 297.7 481 37.8
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.1e-78 297.4 430 41.2
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.1e-78 297.4 365 47.4
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 2.7e-78 297.0 469 39.2
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 2.7e-78 297.0 486 39.5
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 2.7e-78 297.0 480 39.4
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 7.9e-78 295.4 462 38.7
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.0e-77 295.0 444 42.1
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 1.0e-77 295.0 460 38.5
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.8e-77 294.3 433 40.2
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 1.8e-77 294.3 371 46.9
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 2.3e-77 293.9 462 41.1
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 6.7e-77 292.4 478 40.2
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 6.7e-77 292.4 445 38.2
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.1e-76 291.6 429 42.0
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 4.3e-76 289.7 451 38.1
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 3.6e-75 286.6 452 39.8
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 4.8e-75 286.2 423 40.4
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 4.8e-75 286.2 442 41.0
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 8.1e-75 285.4 460 38.5
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 2.4e-74 283.9 429 37.8
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 5.3e-74 282.7 450 36.7
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 5.3e-74 282.7 394 41.6
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 9.0e-74 282.0 472 36.9
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 1.2e-73 281.6 486 38.5
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 1.2e-73 281.6 511 41.7
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 2.6e-73 280.4 434 37.8
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 2.6e-73 280.4 370 42.7
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.5e-73 279.6 452 36.1
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 5.8e-73 279.3 382 39.5
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 5.8e-73 279.3 382 39.8
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 5.8e-73 279.3 492 37.0
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 7.6e-73 278.9 425 37.6
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 7.6e-73 278.9 452 37.6
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 9.9e-73 278.5 440 37.5
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 9.9e-73 278.5 479 37.2
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.3e-72 278.1 463 39.1
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 2.9e-72 276.9 478 38.7
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 4.9e-72 276.2 436 36.9
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 4.9e-72 276.2 389 40.4
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 1.1e-71 275.0 453 38.0
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 1.9e-71 274.2 385 41.3
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 2.4e-71 273.9 424 39.9
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 3.2e-71 273.5 378 40.5
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.2e-71 273.1 489 37.6
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 1.2e-70 271.6 459 37.7
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 2.7e-70 270.4 448 39.1
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 6.0e-70 269.2 380 43.2
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 1.3e-69 268.1 523 39.6
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 1.8e-69 267.7 366 43.4
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 3.0e-69 266.9 382 41.1
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.9e-69 266.5 433 39.0
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 6.7e-69 265.8 451 37.5
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 8.7e-69 265.4 520 35.0
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.5e-68 263.8 379 41.7
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 3.3e-68 263.5 449 38.1
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 3.3e-68 263.5 476 36.3
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 5.6e-68 262.7 428 40.9
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 5.6e-68 262.7 436 36.0
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 7.4e-68 262.3 432 37.5
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.6e-67 261.2 441 38.1
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.6e-67 261.2 440 38.6
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 2.8e-67 260.4 451 37.3
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 4.8e-67 259.6 461 36.9
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 8.1e-67 258.8 388 37.9
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.5e-65 254.6 392 38.3
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 2.0e-65 254.2 441 37.0
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.7e-64 251.1 428 36.2
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 2.9e-64 250.4 424 37.5
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.1e-63 245.7 433 38.1
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 4.6e-62 243.0 313 44.1
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 8.7e-61 238.8 416 36.5
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 4.3e-60 236.5 392 39.5
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 6.3e-59 232.6 445 36.0
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.4e-58 231.5 490 33.1
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.5e-57 228.0 309 43.4
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 7.6e-57 225.7 483 35.0
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 1.7e-56 224.6 423 36.9
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.6e-54 218.0 431 33.6
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 3.6e-54 216.9 288 44.4
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 6.1e-54 216.1 496 31.7
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.0e-53 215.3 474 33.8
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 4.3e-52 209.9 503 31.8
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.6e-51 208.0 223 52.9
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 2.8e-51 207.2 302 39.4
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 4.8e-51 206.5 413 35.1
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 8.2e-51 205.7 362 38.1
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 2.2e-48 197.6 348 35.9
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.1e-46 189.5 334 37.4
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 3.3e-44 183.7 496 29.8
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 2.2e-43 181.0 136 69.9
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 1.1e-42 178.7 514 33.1
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.1e-42 176.8 347 35.2
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 5.3e-42 176.4 485 29.5
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 9.1e-42 175.6 343 34.4
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 9.1e-42 175.6 294 37.4
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 2.0e-41 174.5 197 46.7
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.7e-41 172.6 358 34.9
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.7e-40 171.4 172 51.2
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 1.1e-39 168.7 263 35.7
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 9.4e-39 165.6 192 46.9
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 2.7e-38 164.1 234 41.5
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 1.0e-37 162.2 309 33.7
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 5.2e-37 159.8 465 30.5
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 4.4e-36 156.8 389 32.4
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 1.2e-33 148.7 506 27.3
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 2.2e-32 144.4 157 49.0
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.8e-32 143.7 307 33.6
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.0e-32 143.3 392 30.4
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 1.1e-31 142.1 147 49.7
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 9.4e-31 139.0 155 43.9
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 1.6e-30 138.3 285 33.7
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 2.7e-30 137.5 190 42.6
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.7e-30 136.7 383 30.0
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 3.3e-28 130.6 232 37.1
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 1.1e-26 125.6 153 41.2
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.5e-25 120.2 236 35.2
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 1.7e-24 118.2 100 54.0
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 4.7e-22 110.2 99 55.6
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 8.8e-21 105.9 280 30.0
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.0e-20 104.8 140 38.6
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 5.7e-20 103.2 217 32.7
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.5e-20 102.8 389 27.2
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.5e-17 93.6 113 45.1
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.9e-17 93.2 219 32.0
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.9e-17 93.2 219 32.0
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.9e-15 88.2 158 31.6
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 4.7e-14 83.6 113 39.8
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.1e-10 70.9 199 27.1
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 7.0e-10 69.7 156 30.8
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.2e-09 68.9 99 40.4
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.3e-08 65.5 173 31.8
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 5.0e-08 63.5 72 47.2
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 1.6e-06 58.5 130 29.2
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 1.6e-06 58.5 57 45.6


User provided reference genes

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