Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 7.6e-172 607.1 304 100.0
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 8.4e-171 603.6 304 99.0
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 6.0e-169 597.4 310 97.4
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 7.1e-162 573.9 304 94.4
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 3.0e-160 568.5 315 91.4
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.6e-145 519.6 305 86.9
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 7.7e-116 421.0 320 70.3
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 4.7e-105 385.2 326 65.0
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 1.8e-104 383.3 315 64.8
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.0e-99 367.5 313 62.3
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 8.6e-99 364.4 317 62.5
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 1.9e-98 363.2 317 63.4
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 1.4e-77 293.9 310 58.7
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 3.0e-75 286.2 310 55.8
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 1.1e-74 284.3 310 55.2
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.2e-73 280.8 314 54.5
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 1.4e-72 277.3 310 55.5
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 1.4e-64 250.8 258 54.7
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 1.1e-45 188.0 310 42.3
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 5.7e-34 149.1 317 35.6
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.3e-33 147.9 219 40.6
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 2.8e-33 146.7 287 39.0
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 3.4e-31 139.8 307 34.9
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 4.5e-31 139.4 302 33.8
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 5.9e-31 139.0 264 35.2
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.0e-30 138.3 260 38.1
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.0e-30 138.3 198 39.9
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 2.2e-30 137.1 253 36.8
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 3.8e-30 136.3 251 36.7
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.0e-30 136.0 257 36.6
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.1e-29 134.8 218 39.4
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 1.9e-29 134.0 162 52.5
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 1.9e-29 134.0 162 52.5
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 3.2e-29 133.3 162 52.5
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 1.2e-28 131.3 318 31.4
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 1.6e-28 131.0 240 38.3
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 2.7e-28 130.2 318 31.4
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 1.4e-27 127.9 219 40.2
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 7.4e-26 122.1 211 35.1
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-25 120.9 283 31.4
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.2e-25 120.6 283 33.2
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 6.3e-25 119.0 214 36.4
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.4e-24 117.9 234 33.3
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.8e-24 117.5 357 28.6
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 1.8e-24 117.5 418 26.3
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 3.1e-24 116.7 235 31.9
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 9.1e-24 115.2 312 30.8
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.2e-23 114.8 226 33.6
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 1.5e-23 114.4 249 32.5
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.6e-23 113.6 232 32.8
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 3.4e-23 113.2 242 31.0
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 3.4e-23 113.2 239 33.5
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 4.5e-23 112.8 288 30.9
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.3e-22 111.3 243 31.3
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.2e-22 110.5 244 31.1
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 2.2e-22 110.5 312 28.8
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.1e-21 108.2 336 28.6
BcaB05g22585 Brassica carinata HOM05D006496 ORTHO05D008390 7.2e-21 105.5 176 44.3
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.2e-20 104.8 109 52.3
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 2.7e-20 103.6 237 30.8
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.6e-20 103.2 313 33.2
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 4.7e-20 102.8 216 32.4
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.4e-19 101.3 202 34.7
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.8e-19 100.9 326 28.5
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.3e-19 100.5 326 28.5
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 2.3e-19 100.5 236 31.4
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 3.0e-19 100.1 184 37.5
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 3.0e-19 100.1 256 32.0
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.9e-19 99.8 204 36.3
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 5.1e-19 99.4 332 29.5
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 5.1e-19 99.4 141 41.1
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.8e-19 98.6 307 30.9
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 1.5e-18 97.8 186 39.2
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 2.6e-18 97.1 263 27.0
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 2.6e-18 97.1 322 26.4
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 5.7e-18 95.9 294 28.2
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 5.7e-18 95.9 184 39.1
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.8e-17 93.6 331 28.4
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 6.3e-17 92.4 309 27.2
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 6.3e-17 92.4 261 29.1
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.8e-16 90.9 244 28.3
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 4.1e-16 89.7 133 39.1
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 9.1e-16 88.6 253 28.1
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 1.6e-15 87.8 294 29.3
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 2.0e-15 87.4 193 33.7
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 2.0e-15 87.4 136 33.8
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 2.5e-13 80.5 146 34.9
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 3.2e-13 80.1 221 30.3
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 7.2e-13 79.0 273 29.7
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 7.2e-13 79.0 139 36.7
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 9.4e-13 78.6 211 31.3
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.2e-12 78.2 209 30.1
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 8.0e-12 75.5 200 26.5
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 8.0e-12 75.5 197 30.5
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.4e-11 74.7 216 30.6
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.1e-10 71.6 214 29.4
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 5.7e-10 69.3 60 53.3
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 7.5e-10 68.9 197 28.9
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 7.5e-10 68.9 204 29.4
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-09 67.8 182 31.3
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 6.3e-09 65.9 46 67.4
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 1.4e-08 64.7 64 53.1
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.8e-08 64.3 46 65.2
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.4e-08 63.9 107 37.4
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 2.4e-08 63.9 46 63.0
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 7.0e-08 62.4 166 27.1
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 9.1e-08 62.0 132 34.8
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.2e-07 61.6 70 47.1
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 1.2e-07 61.6 148 34.5
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 1.6e-07 61.2 288 25.3
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.6e-07 61.2 49 57.1
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 2.7e-07 60.5 124 31.5
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 2.7e-07 60.5 291 27.1
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 3.5e-07 60.1 133 33.8
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 1.3e-06 58.2 58 53.4
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.7e-06 57.8 132 31.8
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 1.7e-06 57.8 136 32.4
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.7e-06 57.8 222 28.8
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 2.2e-06 57.4 46 56.5
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 2.2e-06 57.4 130 31.5
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 2.9e-06 57.0 67 44.8
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.9e-06 57.0 128 29.7
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 2.9e-06 57.0 237 26.6
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 2.9e-06 57.0 116 35.3
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.8e-06 56.6 226 28.8
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.8e-06 56.6 222 28.8
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 5.0e-06 56.2 132 29.5
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 5.0e-06 56.2 48 64.6
PSO782G3336 Papaver somniferum HOM05D003520 ORTHO05D003332 6.5e-06 55.8 136 33.8
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 6.5e-06 55.8 115 33.0
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 6.5e-06 55.8 53 50.9


User provided reference genes

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