Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19026 Brassica carinata HOM05D005216 ORTHO05D006453 6.9e-62 240.4 112 100.0
BcaC05g28683 Brassica carinata HOM05D005216 ORTHO05D006453 2.0e-53 212.2 126 83.3
BcaC05g28181 Brassica carinata HOM05D005216 ORTHO05D006453 1.1e-51 206.5 125 81.6
A05p27300 Brassica napus HOM05D005216 ORTHO05D006453 1.1e-51 206.5 125 81.6
C05p42210 Brassica napus HOM05D005216 ORTHO05D006453 1.1e-51 206.5 125 81.6
BolC5t32949H Brassica oleracea HOM05D005216 ORTHO05D006453 1.1e-51 206.5 125 81.6
BraA05t21622Z Brassica rapa HOM05D005216 ORTHO05D006453 1.1e-51 206.5 125 81.6
BcaB06g26221 Brassica carinata HOM05D005216 ORTHO05D006453 1.4e-51 206.1 125 81.6
A02p23360 Brassica napus HOM05D005216 ORTHO05D006453 1.9e-51 205.7 126 81.7
BraA03t14429Z Brassica rapa HOM05D005216 ORTHO05D006453 1.9e-51 205.7 126 81.7
BraA07t29116Z Brassica rapa HOM05D005216 ORTHO05D006453 1.9e-51 205.7 126 81.7
BraA09t38361Z Brassica rapa HOM05D005216 ORTHO05D006453 2.5e-51 205.3 126 81.0
Sp3g19360 Schrenkiella parvula HOM05D005216 ORTHO05D006453 3.0e-49 198.4 125 78.4
Thhalv10020447m.g Eutrema salsugineum HOM05D005216 ORTHO05D006453 1.5e-48 196.1 125 76.0
AL3G35360 Arabidopsis lyrata HOM05D005216 ORTHO05D006453 2.5e-48 195.3 125 76.0
Carub.0003s2133 Capsella rubella HOM05D005216 ORTHO05D006453 4.3e-48 194.5 125 76.8
AT3G21300 Arabidopsis thaliana HOM05D005216 ORTHO05D006453 1.3e-47 193.0 125 75.2
Aa31LG8G8010 Aethionema arabicum HOM05D005216 ORTHO05D006453 7.6e-45 183.7 125 69.6
CARHR097230 Cardamine hirsuta HOM05D005216 ORTHO05D006453 6.5e-44 180.6 125 72.8
PSO210G0066 Papaver somniferum HOM05D005216 ORTHO05D006453 7.9e-42 173.7 125 66.4
PSO210G6279 Papaver somniferum HOM05D005216 ORTHO05D006453 7.9e-42 173.7 125 66.4
Eucgr.J02895 Eucalyptus grandis HOM05D005216 ORTHO05D006453 3.9e-41 171.4 125 62.4
Sed0006988 Sechium edule HOM05D005216 ORTHO05D006453 1.9e-40 169.1 125 65.6
Gohir.D10G065200 Gossypium hirsutum HOM05D005216 ORTHO05D006453 7.4e-40 167.2 125 60.8
Gorai.011G069100 Gossypium raimondii HOM05D005216 ORTHO05D006453 7.4e-40 167.2 125 60.8
Potri.001G195300 Populus trichocarpa HOM05D005216 ORTHO05D006453 9.7e-40 166.8 125 64.0
Oeu052821.2 Olea europaea HOM05D005216 ORTHO05D006453 1.3e-39 166.4 125 63.2
CsaV3_7G034980 Cucumis sativus L. HOM05D005216 ORTHO05D006453 1.7e-39 166.0 125 63.2
Cc04_g02310 Coffea canephora HOM05D005216 ORTHO05D006453 2.8e-39 165.2 125 60.8
arahy.Tifrunner.gnm1.ann1.CL3NUC Arachis hypogaea HOM05D005216 ORTHO05D006453 3.7e-39 164.9 125 63.2
Cpa.g.sc131.16 Carica papaya HOM05D005216 ORTHO05D006453 3.7e-39 164.9 125 60.8
Hma1.2p1_0388F.1_g142030 Hydrangea macrophylla HOM05D005216 ORTHO05D006453 4.8e-39 164.5 125 61.6
Hma1.2p1_0388F.1_g142040 Hydrangea macrophylla HOM05D005216 ORTHO05D006453 4.8e-39 164.5 125 61.6
Thecc.06G105100 Theobroma cacao HOM05D005216 ORTHO05D006453 4.8e-39 164.5 125 60.8
Gohir.A10G063600 Gossypium hirsutum HOM05D005216 ORTHO05D006453 6.3e-39 164.1 125 60.0
Duzib192G0447 Durio zibethinus HOM05D005216 ORTHO05D006453 8.2e-39 163.7 125 58.4
CAN.G1143.37 Capsicum annuum HOM05D005216 ORTHO05D006453 1.1e-38 163.3 125 60.8
ClCG09G000480 Citrullus lanatus HOM05D005216 ORTHO05D006453 1.1e-38 163.3 125 62.4
Prupe.3G054000 Prunus persica HOM05D005216 ORTHO05D006453 1.1e-38 163.3 125 61.6
Atru.chr1.3605 Acer truncatum HOM05D005216 ORTHO05D006453 1.4e-38 162.9 125 60.0
GSVIVG01016904001 Vitis vinifera HOM05D005216 ORTHO05D006453 1.4e-38 162.9 125 59.2
Ciclev10025277m.g Citrus clementina HOM05D005216 ORTHO05D006453 1.8e-38 162.5 125 60.8
HPP92_002841 Vanilla planifolia HOM05D005216 ORTHO05D006453 2.4e-38 162.2 125 60.8
HanXRQChr04g0095951 Helianthus annuus HOM05D005216 ORTHO05D006453 6.9e-38 160.6 125 60.0
Migut.I00980 Erythranthe guttata HOM05D005216 ORTHO05D006453 9.1e-38 160.2 125 60.0
Lj5A50G63 Lonicera japonica HOM05D005216 ORTHO05D006453 9.1e-38 160.2 125 59.2
Dinv37942 Davidia involucrata HOM05D005216 ORTHO05D006453 1.2e-37 159.8 125 60.0
PGSC0003DMG400002513 Solanum tuberosum HOM05D005216 ORTHO05D006453 1.2e-37 159.8 125 60.0
Aqoxy7G03942 Aquilegia oxysepala HOM05D005216 ORTHO05D006453 1.5e-37 159.5 125 60.0
MELO3C024409.2 Cucumis melo HOM05D005216 ORTHO05D006453 1.5e-37 159.5 125 61.6
Lsat_1_v5_gn_1_36600 Lactuca sativa HOM05D005216 ORTHO05D006453 1.5e-37 159.5 125 58.4
PGR102G1400 Punica granatum HOM05D005216 ORTHO05D006453 1.5e-37 159.5 125 60.0
CANSAT56G3252 Cannabis sativa HOM05D005216 ORTHO05D006453 2.0e-37 159.1 125 60.0
Lalb_Chr14g0372921 Lupinus albus HOM05D005216 ORTHO05D006453 2.0e-37 159.1 125 61.6
QL05p016421 Quercus lobata HOM05D005216 ORTHO05D006453 2.0e-37 159.1 125 60.8
Lj3g0001017 Lotus japonicus HOM05D005216 ORTHO05D006453 2.6e-37 158.7 125 62.4
MBI01_g16587_MAGBIO Magnolia biondii HOM05D005216 ORTHO05D006453 2.6e-37 158.7 125 59.2
Solyc03g121260.3 Solanum lycopersicum HOM05D005216 ORTHO05D006453 3.4e-37 158.3 125 59.2
SalBow6G0343 Salvia bowleyana HOM05D005216 ORTHO05D006453 4.5e-37 157.9 125 58.4
Sopen03g040070 Solanum pennellii HOM05D005216 ORTHO05D006453 4.5e-37 157.9 125 59.2
arahy.Tifrunner.gnm1.ann1.412K95 Arachis hypogaea HOM05D005216 ORTHO05D006453 5.9e-37 157.5 125 60.8
Phvul.005G161800 Phaseolus vulgaris HOM05D005216 ORTHO05D006453 5.9e-37 157.5 125 59.2
Hund00732 Selenicereus undatus HOM05D005216 ORTHO05D006453 5.9e-37 157.5 125 60.8
CiPaw.02G142800 Carya illinoinensis HOM05D005216 ORTHO05D006453 7.7e-37 157.1 125 60.0
Sc15g0000030 Simmondsia chinensis HOM05D005216 ORTHO05D006453 7.7e-37 157.1 125 62.4
Cfa003614 Carpinus fangiana HOM05D005216 ORTHO05D006453 1.0e-36 156.8 125 60.0
AUR62022292 Chenopodium quinoa HOM05D005216 ORTHO05D006453 1.7e-36 156.0 125 59.2
Nn8g38966 Nelumbo nucifera HOM05D005216 ORTHO05D006453 1.7e-36 156.0 125 59.2
Ah.01g017050 Amaranthus hybridus HOM05D005216 ORTHO05D006453 2.2e-36 155.6 125 59.2
Manes.11G029600 Manihot esculenta HOM05D005216 ORTHO05D006453 2.2e-36 155.6 126 61.9
TAR636G1794 Trochodendron aralioides HOM05D005216 ORTHO05D006453 2.2e-36 155.6 125 58.4
AUR62023880 Chenopodium quinoa HOM05D005216 ORTHO05D006453 2.9e-36 155.2 125 58.4
COL.COLO4_30571 Corchorus olitorius HOM05D005216 ORTHO05D006453 2.9e-36 155.2 125 56.8
Glyma.13G352500 Glycine max HOM05D005216 ORTHO05D006453 2.9e-36 155.2 125 60.8
Nitab4.5_0009613g0010 Nicotiana tabacum HOM05D005216 ORTHO05D006453 3.8e-36 154.8 125 57.6
Nitab4.5_0009106g0020 Nicotiana tabacum HOM05D005216 ORTHO05D006453 6.5e-36 154.1 125 58.4
DCAR_031420 Daucus carota HOM05D005216 ORTHO05D006453 8.5e-36 153.7 125 60.0
FvH4_6g32800 Fragaria vesca HOM05D005216 ORTHO05D006453 1.1e-35 153.3 125 60.0
FAN09G2417 Fragaria x ananassa HOM05D005216 ORTHO05D006453 1.1e-35 153.3 125 60.0
RcHm_v2.0_Chr2g0141991 Rosa chinensis HOM05D005216 ORTHO05D006453 1.4e-35 152.9 125 60.0
MSTRG.22612 Avicennia marina HOM05D005216 ORTHO05D006453 2.5e-35 152.1 125 58.4
MD17G1179000 Malus domestica HOM05D005216 ORTHO05D006453 2.5e-35 152.1 124 59.7
A06p35760 Brassica napus HOM05D005216 ORTHO05D006453 9.4e-35 150.2 126 62.7
BraA06t26500Z Brassica rapa HOM05D005216 ORTHO05D006453 9.4e-35 150.2 126 62.7
SGA_v2.0_scaffold71G23736 Striga asiatica HOM05D005216 ORTHO05D006453 1.2e-34 149.8 125 57.6
ATR0789G110 Amborella trichopoda HOM05D005216 ORTHO05D006453 1.6e-34 149.4 125 56.8
Psat5g294680 Pisum sativum HOM05D005216 ORTHO05D006453 1.6e-34 149.4 125 57.6
vmacro18831 Vaccinium macrocarpon HOM05D005216 ORTHO05D006453 1.6e-34 149.4 125 57.6
Ca_01178_v3 Cicer arietinum L. HOM05D005216 ORTHO05D006453 2.7e-34 148.7 125 56.8
unitig_32.g11583 Utricularia gibba HOM05D005216 ORTHO05D006453 2.7e-34 148.7 125 59.2
Medtr2g100500 Medicago truncatula HOM05D005216 ORTHO05D006453 4.7e-34 147.9 125 56.0
CSS0048704 Camellia sinensis var. sinensis HOM05D005216 ORTHO05D006453 1.0e-33 146.7 125 54.4
TPR.G6542 Trifolium pratense HOM05D005216 ORTHO05D006453 8.8e-33 143.7 125 54.4
VMungo1080G0616 Vigna mungo HOM05D005216 ORTHO05D006453 8.8e-33 143.7 146 51.4
Eucgr.J02891 Eucalyptus grandis HOM05D005216 ORTHO05D006453 5.7e-32 141.0 111 58.6
Peaxi162Scf00038g01234 Petunia axillaris HOM05D005216 ORTHO05D006453 9.1e-30 133.7 125 52.8
HPP92_008116 Vanilla planifolia HOM05D005216 ORTHO05D006453 4.5e-29 131.3 73 80.8
FAN14G3972 Fragaria x ananassa HOM05D005216 ORTHO05D006453 6.5e-28 127.5 125 53.6
ECA247G0411 Erigeron canadensis HOM05D005216 ORTHO05D006453 7.2e-27 124.0 100 58.0
SMO118G0221 Selaginella moellendorffii HOM05D005216 ORTHO05D006453 9.4e-27 123.6 126 48.4
Haze_15911 Corylus avellana HOM05D005216 ORTHO05D006453 3.0e-25 118.6 125 48.8
Mapoly0054s0113 Marchantia polymorpha HOM05D005216 ORTHO05D006453 1.7e-23 112.8 127 44.9
Sabra01G0143000 Salix brachista HOM05D005216 ORTHO05D006453 2.8e-23 112.1 118 50.8
Os01g0193600 Oryza sativa ssp. japonica HOM05D005216 ORTHO05D006453 1.8e-22 109.4 126 45.2
Pp3c25_5440 Physcomitrium patens HOM05D005216 ORTHO05D006453 2.0e-21 105.9 125 43.2
CBR_g9138 Chara braunii HOM05D005216 ORTHO05D006453 1.7e-20 102.8 122 42.6
BcaC08g47183 Brassica carinata HOM05D005216 ORTHO05D006453 3.2e-19 98.6 52 86.5
AagrBONN_evm.TU.Sc2ySwM_368.3132 Anthoceros agrestis HOM05D005216 ORTHO05D006453 2.0e-16 89.4 154 35.7
Atru.chr11.191 Acer truncatum HOM05D005216 ORTHO05D006453 3.1e-14 82.0 75 52.0
Actinidia21734 Actinidia chinensis HOM05D005216 ORTHO05D006453 7.0e-14 80.9 46 78.3
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 3.5e-13 78.6 74 50.0
ECA247G0873 Erigeron canadensis HOM05D005216 ORTHO05D006453 1.3e-12 76.6 77 48.1
PRCOL_00006587 Prasinoderma coloniale HOM05D005216 ORTHO05D006453 3.8e-12 75.1 104 37.5
Cre12.g501100 Chlamydomonas reinhardtii HOM05D005216 ORTHO05D006453 8.5e-12 73.9 117 34.2
EL10Ac9g21148 Beta vulgaris HOM05D005216 ORTHO05D006453 1.9e-11 72.8 76 46.1
MCO09G155 Micromonas commoda HOM05D005216 ORTHO05D006453 7.2e-11 70.9 124 33.9
FAN02G2896 Fragaria x ananassa HOM05D005216 ORTHO05D006453 4.7e-10 68.2 48 68.8
HPP92_012307 Vanilla planifolia HOM05D005216 ORTHO05D006453 1.4e-09 66.6 70 52.9
SEGI_17876 Sequoiadendron giganteum HOM05D005216 ORTHO05D006453 3.4e-08 62.0 34 76.5


User provided reference genes

Program Settings