Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18815 Brassica carinata HOM05D012846 ORTHO05D016740 2.5e-144 515.4 257 100.0
BolC3t18653H Brassica oleracea HOM05D012846 ORTHO05D016740 1.0e-116 423.7 287 80.5
C08p20140 Brassica napus HOM05D012846 ORTHO05D016740 5.4e-102 374.8 260 78.8
A07p09770 Brassica napus HOM05D012846 ORTHO05D016740 2.7e-85 319.3 282 68.8
BraA09t40262Z Brassica rapa HOM05D012846 ORTHO05D016740 7.3e-75 284.6 306 59.8
BcaC01g02515 Brassica carinata HOM05D012846 ORTHO05D039543 2.1e-74 283.1 287 62.7
C03p63990 Brassica napus HOM05D012846 ORTHO05D039543 1.5e-72 276.9 279 62.4
A09p16510 Brassica napus HOM05D012846 ORTHO05D016740 4.3e-67 258.8 279 59.9
BolC5t33424H Brassica oleracea HOM05D012846 ORTHO05D016740 1.2e-56 224.2 156 78.8
BcaC05g28589 Brassica carinata HOM05D012846 ORTHO05D016740 2.6e-56 223.0 181 70.2
C05p46950 Brassica napus HOM05D012846 ORTHO05D016740 1.1e-54 217.6 277 51.6
BolC5t33425H Brassica oleracea HOM05D012846 ORTHO05D016740 1.1e-25 121.3 63 93.7
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 2.8e-10 70.1 40 87.5
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 2.8e-10 70.1 40 87.5
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 2.8e-10 70.1 40 87.5
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 2.8e-10 70.1 40 87.5
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 1.4e-09 67.8 39 87.2
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 1.4e-09 67.8 39 87.2
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 1.4e-09 67.8 39 87.2
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 1.4e-09 67.8 39 87.2
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 1.4e-09 67.8 39 87.2
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 1.8e-09 67.4 39 84.6
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 1.8e-09 67.4 39 82.1
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 3.1e-09 66.6 37 86.5
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 4.1e-09 66.2 40 80.0
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 5.3e-09 65.9 39 82.1
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 5.3e-09 65.9 40 80.0
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 5.3e-09 65.9 40 80.0
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 5.3e-09 65.9 40 80.0
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 7.0e-09 65.5 39 84.6
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 7.0e-09 65.5 39 82.1
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 7.0e-09 65.5 40 82.5
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 7.0e-09 65.5 40 82.5
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 7.0e-09 65.5 39 84.6
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 7.0e-09 65.5 40 77.5
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 7.0e-09 65.5 40 77.5
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 7.0e-09 65.5 39 82.1
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 9.1e-09 65.1 39 82.1
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 9.1e-09 65.1 39 79.5
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 9.1e-09 65.1 40 77.5
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 9.1e-09 65.1 40 77.5
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 1.2e-08 64.7 95 50.5
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 1.2e-08 64.7 40 77.5
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 1.2e-08 64.7 40 77.5
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 1.2e-08 64.7 40 77.5
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 1.6e-08 64.3 73 49.3
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 1.6e-08 64.3 39 79.5
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 1.6e-08 64.3 39 79.5
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 1.6e-08 64.3 39 79.5
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 2.0e-08 63.9 48 66.7
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 2.0e-08 63.9 40 77.5
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 2.0e-08 63.9 39 79.5
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 2.0e-08 63.9 39 79.5
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 2.6e-08 63.5 39 76.9
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 2.6e-08 63.5 39 76.9
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 2.6e-08 63.5 39 76.9
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 2.6e-08 63.5 40 77.5
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 2.6e-08 63.5 39 76.9
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 2.6e-08 63.5 39 76.9
TPR.G17291 Trifolium pratense HOM05D003934 ORTHO05D005108 2.6e-08 63.5 39 76.9
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 3.5e-08 63.2 39 76.9
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 3.5e-08 63.2 40 75.0
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 3.5e-08 63.2 39 76.9
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 3.5e-08 63.2 39 76.9
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 3.5e-08 63.2 39 76.9
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 3.5e-08 63.2 39 76.9
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 3.5e-08 63.2 39 76.9
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 3.5e-08 63.2 39 76.9
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 3.5e-08 63.2 39 79.5
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 3.5e-08 63.2 39 76.9
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 4.5e-08 62.8 37 83.8
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 4.5e-08 62.8 40 75.0
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 4.5e-08 62.8 40 75.0
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 5.9e-08 62.4 39 76.9
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.9e-08 62.4 40 72.5
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.9e-08 62.4 40 72.5
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.9e-08 62.4 40 72.5
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 5.9e-08 62.4 39 74.4
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 5.9e-08 62.4 40 72.5
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 7.7e-08 62.0 39 76.9
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 7.7e-08 62.0 39 76.9
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 7.7e-08 62.0 39 76.9
Sc25g0000870 Simmondsia chinensis HOM05D003934 ORTHO05D005108 7.7e-08 62.0 40 75.0
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 7.7e-08 62.0 66 53.0
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 7.7e-08 62.0 39 76.9
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 1.0e-07 61.6 40 75.0
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 1.0e-07 61.6 36 83.3
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 1.0e-07 61.6 37 81.1
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 1.3e-07 61.2 36 80.6
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 1.3e-07 61.2 36 83.3
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 1.3e-07 61.2 36 83.3
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 1.7e-07 60.8 43 69.8
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 1.7e-07 60.8 39 74.4
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 2.2e-07 60.5 40 72.5
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 2.2e-07 60.5 39 76.9
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 2.2e-07 60.5 39 74.4
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.2e-07 60.5 41 68.3
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.2e-07 60.5 39 74.4
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 2.2e-07 60.5 65 55.4
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 3.8e-07 59.7 40 70.0
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.8e-07 59.7 40 70.0
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 3.8e-07 59.7 39 71.8
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 5.0e-07 59.3 39 74.4
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.0e-07 59.3 40 70.0
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.0e-07 59.3 40 70.0
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 5.0e-07 59.3 39 76.9
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.5e-07 58.9 40 67.5
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 8.5e-07 58.5 39 71.8
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 8.5e-07 58.5 37 73.0
C06p01320 Brassica napus HOM05D000899 ORTHO05D000710 1.1e-06 58.2 31 87.1
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 1.1e-06 58.2 39 74.4
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.5e-06 57.8 40 67.5
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 1.5e-06 57.8 39 74.4
SEGI_10710 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.5e-06 57.8 36 75.0
Sp5g08830 Schrenkiella parvula HOM05D003934 ORTHO05D005108 1.9e-06 57.4 60 53.3
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 2.5e-06 57.0 39 71.8
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 3.2e-06 56.6 33 78.8
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 4.2e-06 56.2 39 71.8
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 5.5e-06 55.8 36 72.2
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 7.2e-06 55.5 36 75.0
AagrBONN_evm.TU.Sc2ySwM_368.1804 Anthoceros agrestis HOM05D003934 ORTHO05D005108 7.2e-06 55.5 68 47.1


User provided reference genes

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