Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 3.1e-195 685.6 557 100.0
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 8.1e-180 634.4 551 96.2
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 1.2e-175 620.5 552 94.9
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 2.6e-170 602.8 550 93.5
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 5.5e-168 595.1 550 92.9
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 2.6e-162 576.2 557 89.9
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 5.1e-158 562.0 551 88.0
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 4.2e-152 542.3 558 86.2
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 3.0e-150 536.2 555 83.6
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 1.5e-149 533.9 558 83.9
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 4.4e-149 532.3 575 79.0
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.7e-148 530.4 533 66.8
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 1.8e-147 526.9 555 84.7
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.0e-129 468.0 515 83.5
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 2.4e-123 446.8 560 65.7
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 4.1e-91 339.7 534 60.9
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 5.8e-85 319.3 565 55.6
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 8.4e-84 315.5 462 68.6
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 1.2e-82 311.6 531 62.0
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 1.0e-81 308.5 534 64.0
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 3.0e-81 307.0 531 66.5
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 3.9e-81 306.6 517 59.0
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 3.9e-81 306.6 525 58.5
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 2.5e-80 303.9 519 62.4
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 3.3e-80 303.5 575 57.9
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 1.3e-79 301.6 472 51.7
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 1.6e-79 301.2 460 60.9
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 3.6e-79 300.1 518 64.7
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 3.6e-79 300.1 513 49.1
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 6.2e-79 299.3 464 70.7
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 6.2e-79 299.3 464 67.7
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 1.1e-78 298.5 514 56.4
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.4e-78 297.4 473 48.0
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 2.4e-78 297.4 522 47.3
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 3.1e-78 297.0 465 60.6
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 3.1e-78 297.0 560 62.5
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 5.3e-78 296.2 533 59.8
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 9.0e-78 295.4 601 50.7
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 3.8e-76 290.0 463 58.7
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 3.8e-76 290.0 501 57.7
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 4.9e-76 289.7 511 62.6
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 1.4e-75 288.1 503 48.9
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 4.2e-75 286.6 541 54.0
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 1.8e-73 281.2 521 61.0
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 5.1e-73 279.6 519 57.0
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 6.7e-73 279.3 494 64.4
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 5.6e-72 276.2 557 60.9
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 3.6e-71 273.5 446 61.9
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 6.2e-71 272.7 512 56.4
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 3.1e-70 270.4 524 63.4
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 4.0e-70 270.0 468 56.2
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 5.3e-70 269.6 530 60.6
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 9.0e-70 268.9 552 50.0
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.5e-69 268.1 501 59.5
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 2.0e-69 267.7 534 54.3
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 4.5e-69 266.5 445 61.8
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 3.8e-68 263.5 532 54.3
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 8.4e-68 262.3 454 63.2
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.4e-67 261.5 547 47.0
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 2.4e-67 260.8 557 59.6
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 3.2e-67 260.4 465 45.4
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 5.5e-67 259.6 459 40.1
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 9.3e-67 258.8 454 63.0
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.6e-66 258.1 527 52.0
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 2.1e-66 257.7 468 57.3
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 6.0e-66 256.1 463 46.4
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 7.9e-66 255.8 502 42.8
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 1.0e-65 255.4 462 60.2
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 2.3e-65 254.2 494 63.8
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 3.0e-65 253.8 473 62.6
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 3.9e-65 253.4 516 62.4
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 1.9e-64 251.1 471 60.1
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 4.3e-64 250.0 527 36.8
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 5.6e-64 249.6 458 45.6
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 9.6e-64 248.8 505 60.6
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 2.1e-63 247.7 447 47.0
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 2.1e-63 247.7 465 59.8
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 2.8e-63 247.3 468 46.2
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 2.8e-63 247.3 502 57.6
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 6.2e-63 246.1 460 64.3
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 1.1e-62 245.4 514 54.3
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 1.1e-62 245.4 467 57.6
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 1.1e-62 245.4 417 64.3
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 2.6e-61 240.7 488 53.9
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 3.8e-60 236.9 502 45.6
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 1.9e-59 234.6 464 41.8
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 5.5e-59 233.0 474 54.9
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 4.6e-58 229.9 415 58.1
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 1.8e-57 228.0 410 58.8
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 5.1e-57 226.5 593 37.6
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 9.6e-56 222.2 433 62.1
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 1.0e-52 212.2 468 42.5
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.9e-52 210.7 501 50.1
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 3.0e-49 200.7 520 36.7
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 3.7e-47 193.7 155 70.3
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 3.7e-47 193.7 385 48.3
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 1.7e-44 184.9 331 56.8
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 5.0e-44 183.3 284 59.5
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 7.9e-42 176.0 325 44.9
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 1.0e-41 175.6 528 31.8
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.6e-40 171.0 460 29.8
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 1.8e-38 164.9 398 31.2
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 1.1e-35 155.6 190 46.8
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.2e-35 154.1 536 27.2
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 6.1e-34 149.8 159 47.2
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.8e-33 148.3 122 60.7
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 1.4e-30 138.7 79 89.9
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 7.7e-29 132.9 201 40.3
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 1.2e-26 125.6 115 54.8
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.8e-25 121.7 328 46.0
C03p18390 Brassica napus HOM05D035051 ORTHO05D031918 1.6e-21 108.6 172 45.3
BolC3t14236H Brassica oleracea HOM05D035051 ORTHO05D031918 1.6e-21 108.6 172 45.3
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.5e-19 102.1 74 60.8
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 1.2e-18 99.0 138 43.5
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 8.0e-18 96.3 85 56.5
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 2.3e-17 94.7 64 67.2
BcaC01g06180 Brassica carinata HOM05D035051 ORTHO05D031918 1.5e-16 92.0 168 42.3
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.0e-16 91.7 359 27.0
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 6.3e-15 86.7 132 37.1
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 2.0e-13 81.6 124 33.1
Lj1C1019T10 Lonicera japonica HOM05D005626 ORTHO05D007372 4.5e-13 80.5 73 57.5
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.9e-12 77.8 320 47.8
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 6.5e-12 76.6 62 58.1
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 5.5e-11 73.6 135 30.4
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.6e-10 70.9 132 32.6
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.6e-10 70.9 136 31.6
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 1.4e-09 68.9 52 61.5
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 5.2e-09 67.0 53 58.5
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 2.0e-08 65.1 65 55.4
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 2.2e-07 61.6 115 34.8
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 6.3e-07 60.1 50 56.0
BcaB04g17563 Brassica carinata HOM05D037002 ORTHO05D032729 8.3e-07 59.7 71 50.7
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 9.2e-06 56.2 33 78.8


User provided reference genes

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