Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13970 Brassica carinata HOM05D000203 ORTHO05D039916 2.6e-77 292.0 146 100.0
BraA02t05721Z Brassica rapa HOM05D000203 ORTHO05D000135 7.1e-67 257.3 163 83.4
BolC2t07260H Brassica oleracea HOM05D000203 ORTHO05D000135 3.0e-65 251.9 178 77.5
C02p11670 Brassica napus HOM05D000203 ORTHO05D000135 6.6e-65 250.8 164 81.7
BolC2t07262H Brassica oleracea HOM05D000203 ORTHO05D039916 9.6e-64 246.9 168 78.0
BcaB05g22648 Brassica carinata HOM05D000203 ORTHO05D000135 1.3e-55 219.9 183 67.8
BraA02t05723Z Brassica rapa HOM05D000203 ORTHO05D000135 4.0e-54 214.9 144 79.9
BraA02t05725Z Brassica rapa HOM05D000203 ORTHO05D000135 2.6e-53 212.2 159 74.8
BcaC03g13972 Brassica carinata HOM05D000203 ORTHO05D000135 3.5e-42 175.3 196 55.1
BolC2t07264H Brassica oleracea HOM05D000203 ORTHO05D000135 3.5e-42 175.3 196 55.1
C02p11680 Brassica napus HOM05D000203 ORTHO05D000135 7.9e-42 174.1 196 55.1
BraA02t05726Z Brassica rapa HOM05D000203 ORTHO05D000135 7.9e-42 174.1 196 55.1
BcaB05g22642 Brassica carinata HOM05D000203 ORTHO05D000135 3.1e-30 135.6 174 50.6
Thhalv10012100m.g Eutrema salsugineum HOM05D000203 ORTHO05D000135 6.1e-26 121.3 143 52.4
Thhalv10015908m.g Eutrema salsugineum HOM05D000203 ORTHO05D000135 1.7e-23 113.2 143 47.6
Thhalv10003426m.g Eutrema salsugineum HOM05D000203 ORTHO05D000135 2.8e-23 112.5 111 59.5
Sp6g22020 Schrenkiella parvula HOM05D000203 ORTHO05D000135 3.7e-23 112.1 135 51.9
Sp6g22010 Schrenkiella parvula HOM05D000203 ORTHO05D000135 1.8e-22 109.8 150 48.7
BcaC04g19703 Brassica carinata HOM05D000203 ORTHO05D000135 2.6e-21 105.9 155 45.8
C09p53080 Brassica napus HOM05D000203 ORTHO05D000135 2.6e-21 105.9 155 45.8
A10p17650 Brassica napus HOM05D000203 ORTHO05D000135 4.5e-21 105.1 155 45.8
BcaB08g36341 Brassica carinata HOM05D000203 ORTHO05D000135 7.7e-21 104.4 156 46.2
BolC9t58183H Brassica oleracea HOM05D000203 ORTHO05D000135 1.3e-20 103.6 155 45.2
Thhalv10022102m.g Eutrema salsugineum HOM05D000203 ORTHO05D000135 1.7e-20 103.2 142 47.9
SpUn0001_0530 Schrenkiella parvula HOM05D000203 ORTHO05D000135 8.5e-20 100.9 107 52.3
Sp3g17710 Schrenkiella parvula HOM05D000203 ORTHO05D000135 1.4e-19 100.1 159 43.4
Thhalv10003315m.g Eutrema salsugineum HOM05D000203 ORTHO05D000135 6.1e-18 94.7 112 51.8
Carub.0008s2113 Capsella rubella HOM05D000203 ORTHO05D000135 8.0e-18 94.4 144 42.4
Thhalv10000432m.g Eutrema salsugineum HOM05D000203 ORTHO05D000135 1.0e-17 94.0 145 45.5
C02p11640 Brassica napus HOM05D000203 ORTHO05D000135 1.8e-17 93.2 151 43.0
AL8G37040 Arabidopsis lyrata HOM05D000203 ORTHO05D000135 6.7e-17 91.3 146 44.5
BcaC05g28428 Brassica carinata HOM05D000203 ORTHO05D000135 1.5e-16 90.1 106 49.1
C05p45090 Brassica napus HOM05D000203 ORTHO05D000135 1.5e-16 90.1 106 49.1
BcaB06g26038 Brassica carinata HOM05D000203 ORTHO05D000135 2.0e-16 89.7 143 41.3
BolC5t33235H Brassica oleracea HOM05D000203 ORTHO05D000135 3.3e-16 89.0 106 49.1
AT5G60440 Arabidopsis thaliana HOM05D000203 ORTHO05D000135 2.2e-15 86.3 147 41.5
A05p29880 Brassica napus HOM05D000203 ORTHO05D000135 4.8e-15 85.1 106 47.2
CARHR274100 Cardamine hirsuta HOM05D000203 ORTHO05D000135 1.1e-14 84.0 140 43.6
BcaB04g20684 Brassica carinata HOM05D000203 ORTHO05D000135 3.1e-14 82.4 146 41.1
CARHR095150 Cardamine hirsuta HOM05D000203 ORTHO05D000135 3.1e-14 82.4 151 37.1
A01p35040 Brassica napus HOM05D000203 ORTHO05D000135 1.2e-13 80.5 115 45.2
A05p30070 Brassica napus HOM05D000203 ORTHO05D000135 2.0e-13 79.7 143 39.2
THA.LOC104826501 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 2.0e-13 79.7 117 41.0
BraA01t03585Z Brassica rapa HOM05D000203 ORTHO05D000135 4.5e-13 78.6 150 38.7
BraA05t21847Z Brassica rapa HOM05D000203 ORTHO05D000135 7.7e-13 77.8 145 40.0
Ciclev10030142m.g Citrus clementina HOM05D000203 ORTHO05D000135 1.0e-12 77.4 133 41.4
MD10G1112300 Malus domestica HOM05D000203 ORTHO05D000135 1.7e-12 76.6 138 37.7
BcaC09g48928 Brassica carinata HOM05D000203 ORTHO05D000135 2.9e-12 75.9 150 38.0
C01p44450 Brassica napus HOM05D000203 ORTHO05D000135 2.9e-12 75.9 150 38.0
BolC1t04410H Brassica oleracea HOM05D000203 ORTHO05D000135 2.9e-12 75.9 150 38.0
Potri.009G084200 Populus trichocarpa HOM05D000203 ORTHO05D000135 5.0e-12 75.1 127 40.2
C02p11630 Brassica napus HOM05D000203 ORTHO05D027268 6.5e-12 74.7 72 52.8
Aa31LG1G12470 Aethionema arabicum HOM05D000203 ORTHO05D000135 8.5e-12 74.3 115 40.0
THA.LOC104809103 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 7.2e-11 71.2 137 35.0
C02p11660 Brassica napus HOM05D000203 ORTHO05D027268 9.4e-11 70.9 87 47.1
Prupe.8G151900 Prunus persica HOM05D000203 ORTHO05D000135 9.4e-11 70.9 109 35.8
FAN27G2405 Fragaria x ananassa HOM05D000203 ORTHO05D000135 2.1e-10 69.7 128 35.2
Sabra09G0064900 Salix brachista HOM05D000203 ORTHO05D000135 3.6e-10 68.9 127 38.6
Solyc01g106710.1 Solanum lycopersicum HOM05D000203 ORTHO05D000135 4.7e-10 68.6 136 36.0
Atru.chr6.1457 Acer truncatum HOM05D000203 ORTHO05D000135 6.1e-10 68.2 126 38.9
Sed0009196 Sechium edule HOM05D000203 ORTHO05D000135 8.0e-10 67.8 120 39.2
THA.LOC104827420 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 8.0e-10 67.8 110 38.2
FvH4_2g03030 Fragaria vesca HOM05D000203 ORTHO05D000135 1.0e-09 67.4 128 34.4
FAN24G1168 Fragaria x ananassa HOM05D000203 ORTHO05D000135 1.0e-09 67.4 128 34.4
ClCG10G009960 Citrullus lanatus HOM05D000203 ORTHO05D000135 1.4e-09 67.0 92 41.3
vmacro22261 Vaccinium macrocarpon HOM05D000203 ORTHO05D000135 1.4e-09 67.0 110 40.0
Cpa.g.sc106.18 Carica papaya HOM05D000203 ORTHO05D000135 2.3e-09 66.2 147 35.4
CiPaw.05G021900 Carya illinoinensis HOM05D000203 ORTHO05D000135 3.0e-09 65.9 119 36.1
Oeu017586.1 Olea europaea HOM05D000203 ORTHO05D000135 3.0e-09 65.9 110 36.4
QL11p028776 Quercus lobata HOM05D000203 ORTHO05D000135 3.0e-09 65.9 135 34.1
Rhsim05G0093400 Rhododendron simsii HOM05D000203 ORTHO05D000135 3.0e-09 65.9 105 38.1
Oeu017584.1 Olea europaea HOM05D000203 ORTHO05D000135 4.0e-09 65.5 110 36.4
CAN.G504.4 Capsicum annuum HOM05D000203 ORTHO05D000135 5.2e-09 65.1 100 39.0
Aa31LG8G6470 Aethionema arabicum HOM05D000203 ORTHO05D000135 6.7e-09 64.7 145 34.5
MELO3C018030.2 Cucumis melo HOM05D000203 ORTHO05D000135 8.8e-09 64.3 87 41.4
CsaV3_4G000010 Cucumis sativus L. HOM05D000203 ORTHO05D000135 8.8e-09 64.3 87 41.4
Peaxi162Scf00249g00064 Petunia axillaris HOM05D000203 ORTHO05D000135 8.8e-09 64.3 118 33.9
RcHm_v2.0_Chr6g0247821 Rosa chinensis HOM05D000203 ORTHO05D000135 8.8e-09 64.3 128 32.8
Manes.07G051700 Manihot esculenta HOM05D000203 ORTHO05D000135 1.2e-08 63.9 125 36.0
Lj9C337T6 Lonicera japonica HOM05D000203 ORTHO05D000135 1.5e-08 63.5 112 37.5
Cpa.g.c37271 Carica papaya HOM05D000203 ORTHO05D000135 2.6e-08 62.8 143 32.9
Cpa.g.sc654.6 Carica papaya HOM05D000203 ORTHO05D000135 3.3e-08 62.4 148 31.8
Cpa.g.sc1455.2 Carica papaya HOM05D000203 ORTHO05D000135 4.4e-08 62.0 139 33.8
TWI23G0296 Tripterygium wilfordii HOM05D000203 ORTHO05D000135 4.4e-08 62.0 126 31.0
Cpa.g.c30908.1 Carica papaya HOM05D000203 ORTHO05D000135 7.5e-08 61.2 139 33.8
Cpa.g.c35510 Carica papaya HOM05D000203 ORTHO05D000135 7.5e-08 61.2 155 31.6
Medtr1g012570 Medicago truncatula HOM05D000203 ORTHO05D000135 7.5e-08 61.2 106 38.7
Peaxi162Scf00016g03251 Petunia axillaris HOM05D000203 ORTHO05D000135 7.5e-08 61.2 101 37.6
PGSC0003DMG400044387 Solanum tuberosum HOM05D000203 ORTHO05D000135 9.7e-08 60.8 136 34.6
Cpa.g.sc505.4 Carica papaya HOM05D000203 ORTHO05D000135 1.3e-07 60.5 160 31.2
Hma1.2p1_1051F.1_g252260 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 1.3e-07 60.5 83 38.6
Solyc01g106720.1 Solanum lycopersicum HOM05D000203 ORTHO05D000135 1.3e-07 60.5 100 37.0
Sopen01g049040 Solanum pennellii HOM05D000203 ORTHO05D000135 1.3e-07 60.5 100 37.0
PGSC0003DMG400005131 Solanum tuberosum HOM05D000203 ORTHO05D000135 1.3e-07 60.5 100 37.0
Sed0020653 Sechium edule HOM05D000203 ORTHO05D000135 1.7e-07 60.1 92 38.0
BcaC03g13971 Brassica carinata HOM05D000203 ORTHO05D027268 2.8e-07 59.3 64 53.1
Cpa.g.sc625.4 Carica papaya HOM05D000203 ORTHO05D000135 2.8e-07 59.3 154 31.2
CiPaw.06G163000 Carya illinoinensis HOM05D000203 ORTHO05D000135 2.8e-07 59.3 100 37.0
MD05G1107900 Malus domestica HOM05D000203 ORTHO05D000135 2.8e-07 59.3 138 30.4
Sabra07G0092900 Salix brachista HOM05D000203 ORTHO05D000135 2.8e-07 59.3 121 36.4
CSS0008388 Camellia sinensis var. sinensis HOM05D000203 ORTHO05D000135 3.7e-07 58.9 100 38.0
Cpa.g.sc106.20 Carica papaya HOM05D000203 ORTHO05D000135 3.7e-07 58.9 152 31.6
Medtr8g043650 Medicago truncatula HOM05D000203 ORTHO05D000135 3.7e-07 58.9 106 37.7
Nitab4.5_0004004g0020 Nicotiana tabacum HOM05D000203 ORTHO05D000135 3.7e-07 58.9 100 36.0
Oeu025302.1 Olea europaea HOM05D000203 ORTHO05D000135 3.7e-07 58.9 107 33.6
Psat6g211280 Pisum sativum HOM05D000203 ORTHO05D000135 3.7e-07 58.9 112 37.5
TWI75G1001 Tripterygium wilfordii HOM05D000203 ORTHO05D000135 3.7e-07 58.9 91 38.5
GSVIVG01037031001 Vitis vinifera HOM05D000203 ORTHO05D000135 3.7e-07 58.9 113 36.3
CSS0044339 Camellia sinensis var. sinensis HOM05D000203 ORTHO05D000135 4.8e-07 58.5 100 38.0
Cpa.g.c30689 Carica papaya HOM05D000203 ORTHO05D000135 4.8e-07 58.5 148 31.8
Cpa.g.sc347.7 Carica papaya HOM05D000203 ORTHO05D000135 6.3e-07 58.2 91 38.5
Glyma.20G136500 Glycine max HOM05D000203 ORTHO05D000135 6.3e-07 58.2 121 33.9
Gohir.D02G235000 Gossypium hirsutum HOM05D000203 ORTHO05D000135 6.3e-07 58.2 141 30.5
Gorai.005G263100 Gossypium raimondii HOM05D000203 ORTHO05D000135 6.3e-07 58.2 141 30.5
Nitab4.5_0025184g0010 Nicotiana tabacum HOM05D000203 ORTHO05D000135 6.3e-07 58.2 122 32.8
TWI15G1149 Tripterygium wilfordii HOM05D000203 ORTHO05D000135 6.3e-07 58.2 80 38.8
CSS0006714 Camellia sinensis var. sinensis HOM05D000203 ORTHO05D000135 8.2e-07 57.8 99 38.4
Cpa.g.c41453 Carica papaya HOM05D000203 ORTHO05D000135 8.2e-07 57.8 91 38.5
Sabra09G0064800 Salix brachista HOM05D000203 ORTHO05D000135 8.2e-07 57.8 84 38.1
Nitab4.5_0005046g0020 Nicotiana tabacum HOM05D000203 ORTHO05D000135 1.1e-06 57.4 118 32.2
Rhsim11G0149000 Rhododendron simsii HOM05D000203 ORTHO05D000135 1.1e-06 57.4 81 35.8
GSVIVG01037024001 Vitis vinifera HOM05D000203 ORTHO05D000135 1.1e-06 57.4 117 32.5
BcaC03g13969 Brassica carinata HOM05D000203 ORTHO05D027268 1.4e-06 57.0 64 51.6
Gohir.A03G213500 Gossypium hirsutum HOM05D000203 ORTHO05D000135 1.4e-06 57.0 141 29.8
Psat6g212440 Pisum sativum HOM05D000203 ORTHO05D000135 1.4e-06 57.0 85 37.6
TWI36G0397 Tripterygium wilfordii HOM05D000203 ORTHO05D000135 1.4e-06 57.0 107 35.5
CSS0049268 Camellia sinensis var. sinensis HOM05D000203 ORTHO05D000135 1.8e-06 56.6 100 37.0
CAN.G730.26 Capsicum annuum HOM05D000203 ORTHO05D000135 1.8e-06 56.6 121 33.1
Cpa.g.c26687.3 Carica papaya HOM05D000203 ORTHO05D000135 1.8e-06 56.6 155 31.0
Cpa.g.c41623 Carica papaya HOM05D000203 ORTHO05D000135 1.8e-06 56.6 140 31.4
TWI59G0047 Tripterygium wilfordii HOM05D000203 ORTHO05D000135 1.8e-06 56.6 134 32.8
Lj9C337T7 Lonicera japonica HOM05D000203 ORTHO05D000135 2.4e-06 56.2 85 35.3
Medtr1g105910 Medicago truncatula HOM05D000203 ORTHO05D000135 2.4e-06 56.2 130 31.5
CAN.G730.2 Capsicum annuum HOM05D000203 ORTHO05D000135 3.1e-06 55.8 121 33.1
Cpa.g.c28241.1 Carica papaya HOM05D000203 ORTHO05D000135 3.1e-06 55.8 91 37.4
Cpa.g.sc758.4 Carica papaya HOM05D000203 ORTHO05D000135 3.1e-06 55.8 91 36.3
Nitab4.5_0005046g0060 Nicotiana tabacum HOM05D000203 ORTHO05D000135 3.1e-06 55.8 118 31.4
C02p45880 Brassica napus HOM05D000203 ORTHO05D000135 4.1e-06 55.5 62 50.0
Cpa.g.c35751 Carica papaya HOM05D000203 ORTHO05D000135 4.1e-06 55.5 91 37.4
Cpa.g.sc348.4 Carica papaya HOM05D000203 ORTHO05D000135 4.1e-06 55.5 157 29.9
Glyma.20G136400 Glycine max HOM05D000203 ORTHO05D000135 4.1e-06 55.5 81 38.3
HanXRQChr14g0456481 Helianthus annuus HOM05D000203 ORTHO05D000135 4.1e-06 55.5 107 33.6
TPR.G3865 Trifolium pratense HOM05D000203 ORTHO05D000135 4.1e-06 55.5 98 34.7
TWI81G0246 Tripterygium wilfordii HOM05D000203 ORTHO05D000135 4.1e-06 55.5 79 40.5
GSVIVG01037034001 Vitis vinifera HOM05D000203 ORTHO05D000135 4.1e-06 55.5 117 35.9
Medtr1g105905 Medicago truncatula HOM05D000203 ORTHO05D000135 5.3e-06 55.1 112 35.7
Medtr3g030770 Medicago truncatula HOM05D000203 ORTHO05D000135 5.3e-06 55.1 101 36.6
Psat5g214600 Pisum sativum HOM05D000203 ORTHO05D000135 5.3e-06 55.1 128 32.0
Potri.007G113800 Populus trichocarpa HOM05D000203 ORTHO05D000135 5.3e-06 55.1 119 33.6
QL11p028754 Quercus lobata HOM05D000203 ORTHO05D000135 5.3e-06 55.1 93 37.6
Sabra17G0031900 Salix brachista HOM05D000203 ORTHO05D000135 5.3e-06 55.1 120 34.2
TPR.G3858 Trifolium pratense HOM05D000203 ORTHO05D000135 5.3e-06 55.1 75 37.3
Actinidia00343 Actinidia chinensis HOM05D001079 ORTHO05D000135 7.0e-06 54.7 135 29.6
CAN.G730.23 Capsicum annuum HOM05D000203 ORTHO05D000135 7.0e-06 54.7 121 32.2
Eucgr.I02506 Eucalyptus grandis HOM05D000203 ORTHO05D000135 7.0e-06 54.7 102 37.3
Ca_11011_v3 Cicer arietinum L. HOM05D000203 ORTHO05D000135 9.1e-06 54.3 107 38.3
Ca_17913_v3 Cicer arietinum L. HOM05D000203 ORTHO05D000135 9.1e-06 54.3 75 38.7
Dinv12564 Davidia involucrata HOM05D000203 ORTHO05D000135 9.1e-06 54.3 90 34.4
MD10G1112400 Malus domestica HOM05D000203 ORTHO05D000135 9.1e-06 54.3 103 35.0
Potri.017G047300 Populus trichocarpa HOM05D000203 ORTHO05D000135 9.1e-06 54.3 117 31.6
PGR142G0376 Punica granatum HOM05D000203 ORTHO05D000135 9.1e-06 54.3 122 29.5
QL11p028631 Quercus lobata HOM05D000203 ORTHO05D000135 9.1e-06 54.3 93 37.6


User provided reference genes

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