Gene: AT5G60440

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G60440
  • Transcript Identifier AT5G60440.1
  • Gene Type Coding gene
  • Location Chr5 : 24306329-24307520 : positive

Gene Family Information

  • ID HOM05D000203
  • #Genes/#Species 1948/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G60440.1
  • symbol AGL62
  • uniprot Q9FKK2

Descriptions

  • Description AGAMOUS-like 62
  • Computational description AGAMOUS-like 62 (AGL62); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellularization of endosperm, endosperm development; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT4G36590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045944
IEA
Gene Ontologypositive regulation of transcription by RNA polymerase II
GO:0045944
IEA
InterPropositive regulation of transcription by RNA polymerase II
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II1
GO:2000012
IMP
Gene Ontologyregulation of auxin polar transport2
GO:0009960
IMP
Gene Ontologyendosperm development3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific1
GO:0000977
IEA
GOA DatabaseRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000977
IEA
InterProRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding1
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036879 Transcription factor, MADS-box superfamily
IPR002100 Transcription factor, MADS-box
IPR033896 MADS MEF2-like
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)