Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13192 Brassica carinata HOM05D004178 ORTHO05D039567 1.5e-52 209.1 102 100.0
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 1.8e-16 89.4 67 68.7
BolC2t06288H Brassica oleracea HOM05D004178 ORTHO05D005204 1.2e-15 86.7 41 95.1
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 7.5e-15 84.0 67 62.7
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 9.8e-15 83.6 67 65.7
AL1G57860 Arabidopsis lyrata HOM05D004178 ORTHO05D005039 1.6e-12 76.3 70 58.6
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 2.0e-12 75.9 40 85.0
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 2.7e-12 75.5 66 59.1
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 2.7e-12 75.5 66 57.6
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 2.7e-12 75.5 66 57.6
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 6.0e-12 74.3 66 54.5
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 6.0e-12 74.3 40 82.5
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 6.0e-12 74.3 67 58.2
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 6.0e-12 74.3 66 56.1
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 7.8e-12 73.9 67 55.2
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 7.8e-12 73.9 66 57.6
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 7.8e-12 73.9 66 57.6
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 7.8e-12 73.9 66 56.1
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 1.0e-11 73.6 67 55.2
PGSC0003DMG400014287 Solanum tuberosum HOM05D004178 ORTHO05D005204 1.0e-11 73.6 66 57.6
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 1.0e-11 73.6 66 56.1
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 1.7e-11 72.8 41 80.5
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 1.7e-11 72.8 99 45.5
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 1.7e-11 72.8 40 77.5
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 2.3e-11 72.4 66 54.5
Ca_02789_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 2.3e-11 72.4 40 77.5
Ca_30729_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 2.3e-11 72.4 40 77.5
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 2.3e-11 72.4 66 54.5
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 2.3e-11 72.4 40 77.5
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 2.3e-11 72.4 40 77.5
BcaB01g01097 Brassica carinata HOM05D004178 ORTHO05D039567 3.0e-11 72.0 50 72.0
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 3.0e-11 72.0 66 56.1
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 3.0e-11 72.0 66 56.1
Psat3g047440 Pisum sativum HOM05D004178 ORTHO05D005204 3.0e-11 72.0 40 77.5
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 3.0e-11 72.0 40 77.5
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 3.9e-11 71.6 66 54.5
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 3.9e-11 71.6 40 80.0
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 5.0e-11 71.2 40 75.0
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 5.0e-11 71.2 66 56.1
CAN.G515.9 Capsicum annuum HOM05D004178 ORTHO05D005204 6.6e-11 70.9 66 56.1
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 6.6e-11 70.9 87 47.1
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 6.6e-11 70.9 67 50.7
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 6.6e-11 70.9 39 76.9
Atru.chr1.752 Acer truncatum HOM05D004178 ORTHO05D005204 8.6e-11 70.5 41 73.2
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 8.6e-11 70.5 65 53.8
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 8.6e-11 70.5 98 46.9
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 8.6e-11 70.5 67 53.7
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 1.1e-10 70.1 66 54.5
DCAR_014618 Daucus carota HOM05D004178 ORTHO05D005204 1.1e-10 70.1 41 75.6
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 1.5e-10 69.7 66 54.5
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 1.5e-10 69.7 66 54.5
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 1.5e-10 69.7 91 45.1
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 1.9e-10 69.3 66 53.0
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 1.9e-10 69.3 40 72.5
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 1.9e-10 69.3 40 77.5
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.9e-10 69.3 66 54.5
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.9e-10 69.3 66 54.5
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 2.5e-10 68.9 67 55.2
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 2.5e-10 68.9 67 55.2
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 2.5e-10 68.9 66 54.5
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 3.3e-10 68.6 41 70.7
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 3.3e-10 68.6 40 72.5
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 4.3e-10 68.2 40 72.5
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 4.3e-10 68.2 40 72.5
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 5.6e-10 67.8 65 53.8
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 5.6e-10 67.8 66 51.5
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 5.6e-10 67.8 77 48.1
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 7.3e-10 67.4 66 53.0
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 7.3e-10 67.4 39 74.4
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 7.3e-10 67.4 39 74.4
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 7.3e-10 67.4 39 74.4
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 7.3e-10 67.4 39 74.4
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 7.3e-10 67.4 39 74.4
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 7.3e-10 67.4 66 51.5
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 7.3e-10 67.4 65 52.3
Oeu021706.1 Olea europaea HOM05D004178 ORTHO05D005204 9.5e-10 67.0 66 50.0
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 9.5e-10 67.0 41 68.3
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 9.5e-10 67.0 65 52.3
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 1.2e-09 66.6 66 51.5
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 1.2e-09 66.6 39 71.8
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 1.6e-09 66.2 91 42.9
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 1.6e-09 66.2 91 42.9
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.6e-09 66.2 39 71.8
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 1.6e-09 66.2 39 74.4
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 2.1e-09 65.9 67 50.7
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 2.1e-09 65.9 39 74.4
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 3.6e-09 65.1 65 50.8
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 3.6e-09 65.1 45 62.2
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 3.6e-09 65.1 40 72.5
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 6.2e-09 64.3 91 42.9
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 6.2e-09 64.3 39 69.2
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 1.1e-08 63.5 39 66.7
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 1.1e-08 63.5 39 66.7
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 1.4e-08 63.2 39 71.8
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 2.3e-08 62.4 39 66.7
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 4.0e-08 61.6 39 66.7
Os09g0121000 Oryza sativa ssp. japonica HOM05D004178 ORTHO05D005204 4.0e-08 61.6 76 44.7
Glyma.12G006400 Glycine max HOM05D004178 ORTHO05D005204 5.2e-08 61.2 65 47.7
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 5.2e-08 61.2 40 67.5
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 5.2e-08 61.2 40 67.5
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 5.2e-08 61.2 40 67.5
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 5.2e-08 61.2 79 40.5
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 1.2e-07 60.1 39 71.8
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 3.4e-07 58.5 67 49.3
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 3.4e-07 58.5 67 47.8
HPP92_027283 Vanilla planifolia HOM05D004178 ORTHO05D005204 7.5e-07 57.4 39 66.7
Ah.02g120680 Amaranthus hybridus HOM05D004178 ORTHO05D005204 3.7e-06 55.1 40 65.0
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 6.4e-06 54.3 64 50.0
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 8.3e-06 53.9 66 43.9
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 8.3e-06 53.9 43 60.5


User provided reference genes

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