Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 2084.3 1041 100.0
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 0.0e+00 2075.1 1041 99.7
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 0.0e+00 1983.4 1041 96.2
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1945.6 1041 95.1
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 0.0e+00 1869.4 1053 91.0
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1736.5 1079 83.9
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 0.0e+00 1616.7 1086 77.1
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 0.0e+00 1584.7 1103 76.1
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 0.0e+00 1577.8 1096 76.8
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 0.0e+00 1576.2 1110 75.0
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 0.0e+00 1434.5 1100 69.3
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 0.0e+00 1319.7 1112 64.9
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 0.0e+00 1213.4 834 74.2
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 2.3e-305 1052.4 1112 52.2
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 7.3e-299 1030.8 1111 52.0
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 1.4e-297 1026.5 1112 52.4
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 4.4e-296 1021.5 1111 52.5
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 2.7e-293 1012.3 1104 51.3
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 1.7e-292 1009.6 1101 51.2
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 1.1e-275 953.7 1072 48.8
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 4.3e-275 951.8 1093 49.4
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 9.6e-275 950.7 1097 49.2
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 4.8e-274 948.3 1091 49.9
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 2.4e-273 946.0 1064 49.2
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 2.9e-271 939.1 1095 47.6
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 1.1e-270 937.2 1044 50.3
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 4.2e-270 935.3 1095 49.3
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 1.2e-269 933.7 1086 49.4
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 1.6e-269 933.3 1105 48.1
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 6.0e-269 931.4 1086 48.5
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 7.9e-269 931.0 1109 49.1
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 7.9e-269 931.0 1106 49.2
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 8.7e-268 927.5 1129 46.9
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 2.5e-267 926.0 1055 49.9
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 3.3e-267 925.6 1142 46.3
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 6.2e-266 921.4 1064 48.9
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 3.1e-265 919.1 1052 47.1
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 4.9e-263 911.8 1124 47.4
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 1.1e-262 910.6 1069 48.6
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.1e-262 910.6 1065 49.0
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 2.5e-262 909.4 990 50.3
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 5.5e-262 908.3 1127 45.3
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 9.3e-262 907.5 1106 47.1
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 5.1e-260 901.7 1090 46.9
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 2.1e-258 896.3 1100 45.5
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 2.4e-257 892.9 1068 48.4
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 3.8e-255 885.6 1090 47.2
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 1.2e-253 880.6 1085 46.3
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 1.8e-252 876.7 1121 45.8
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 2.5e-251 872.8 520 86.3
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 1.6e-250 870.2 1082 47.5
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 2.8e-250 869.4 1079 45.7
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 1.4e-249 867.1 1111 44.9
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 9.0e-249 864.4 1094 45.0
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 1.5e-248 863.6 1087 45.2
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 6.5e-247 858.2 1075 46.5
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 1.0e-244 850.9 1057 45.0
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 8.8e-244 847.8 1108 45.1
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 1.1e-241 840.9 984 47.8
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 1.2e-240 837.4 1125 44.0
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 3.4e-240 835.9 780 55.3
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 4.2e-238 828.9 1095 44.3
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 7.2e-238 828.2 1099 43.2
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 7.9e-237 824.7 1085 44.2
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 5.1e-236 822.0 728 59.2
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 2.2e-234 816.6 1057 44.7
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 3.8e-231 805.8 1031 43.3
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 1.9e-230 803.5 855 49.1
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 8.0e-229 798.1 1089 43.8
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 2.4e-225 786.6 778 52.6
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 5.3e-225 785.4 725 58.5
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 2.6e-224 783.1 743 54.9
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 3.5e-224 782.7 1074 42.4
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 5.0e-223 778.9 743 53.8
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.7e-216 756.5 688 58.0
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 5.0e-215 752.3 1083 42.4
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 4.7e-213 745.7 928 46.2
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 4.0e-212 742.7 964 45.4
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 1.3e-210 737.6 755 50.2
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 7.0e-209 731.9 752 50.4
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 3.0e-199 699.9 777 50.6
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 5.2e-196 689.1 1026 42.5
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 2.9e-194 683.3 908 43.5
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 8.1e-181 638.6 737 48.3
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 4.8e-165 586.3 606 52.0
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 4.9e-154 549.7 999 35.3
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 9.6e-150 535.4 721 40.8
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 8.7e-135 485.7 702 43.4
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 9.7e-118 429.1 807 34.0
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 4.2e-105 387.1 365 58.6
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 9.4e-105 386.0 539 45.5
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 4.5e-91 340.5 656 36.4
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 2.5e-81 308.1 1089 28.7
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.1e-63 249.6 528 32.2
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 4.2e-36 157.9 129 56.6
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 3.0e-34 151.8 134 58.2
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.1e-33 149.8 190 49.5
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.5e-33 149.4 185 50.3
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 1.1e-31 143.3 93 64.5
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.4e-31 142.1 99 63.6
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 4.0e-31 141.4 168 49.4
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.2e-27 129.8 160 52.5
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 1.3e-24 119.8 75 61.3
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.8e-24 118.6 160 48.8
TAR622G0913 Trochodendron aralioides HOM05D007034 ORTHO05D008665 3.1e-23 115.2 247 34.8
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 2.0e-22 112.5 80 56.2
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 3.9e-18 98.2 386 24.4
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 9.7e-17 93.6 82 57.3
Atru.chr6.1955 Acer truncatum HOM05D007034 ORTHO05D008665 2.0e-14 85.9 130 38.5
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 5.9e-14 84.3 70 58.6
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.4e-12 79.7 69 59.4
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 4.2e-12 78.2 69 58.0
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 1.8e-10 72.8 240 26.7
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 3.0e-10 72.0 425 23.3
Lsat_1_v5_gn_2_45281 Lactuca sativa HOM05D007034 ORTHO05D008665 3.0e-10 72.0 64 54.7
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 6.7e-10 70.9 191 29.3
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 6.7e-10 70.9 425 23.1
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 1.1e-09 70.1 276 25.4
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 5.7e-09 67.8 425 22.6
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 7.4e-09 67.4 314 23.6
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 7.4e-09 67.4 407 23.6
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 9.7e-09 67.0 378 24.1
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 1.7e-08 66.2 198 26.3
MBI11_g13135_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.7e-08 66.2 142 33.8
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.7e-08 66.2 402 23.4
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 2.8e-08 65.5 241 24.1
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 2.8e-08 65.5 319 25.4
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 2.8e-08 65.5 350 24.9
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 3.7e-08 65.1 314 26.4
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 4.8e-08 64.7 318 25.5
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 6.3e-08 64.3 197 25.9
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 6.3e-08 64.3 331 25.7
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 6.3e-08 64.3 312 23.7
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 8.2e-08 63.9 197 24.9
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 8.2e-08 63.9 198 25.8
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 1.1e-07 63.5 194 26.3
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 1.4e-07 63.2 194 25.8
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 1.4e-07 63.2 350 24.9
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 1.8e-07 62.8 352 24.1
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 1.8e-07 62.8 194 25.8
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 1.8e-07 62.8 233 24.5
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 2.4e-07 62.4 261 24.9
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 3.1e-07 62.0 194 24.2
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 3.1e-07 62.0 320 26.2
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 5.3e-07 61.2 321 24.3
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 6.9e-07 60.8 192 26.6
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 6.9e-07 60.8 192 25.0
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 1.2e-06 60.1 162 25.9
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 1.2e-06 60.1 313 23.6
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 1.5e-06 59.7 194 23.2
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 1.5e-06 59.7 319 25.4
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.5e-06 59.7 255 28.6
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 2.0e-06 59.3 264 23.1
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 2.6e-06 58.9 192 25.5
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 3.4e-06 58.5 197 22.3
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 3.4e-06 58.5 197 22.3
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 3.4e-06 58.5 198 24.2
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 3.4e-06 58.5 198 23.7
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 3.4e-06 58.5 264 28.0
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 3.4e-06 58.5 194 26.8
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 5.9e-06 57.8 315 24.1
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 5.9e-06 57.8 321 23.4
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 5.9e-06 57.8 210 27.1
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 5.9e-06 57.8 203 25.1
TAR629G2651 Trochodendron aralioides HOM05D006350 ORTHO05D007850 5.9e-06 57.8 315 23.8
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 7.7e-06 57.4 322 23.9
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 7.7e-06 57.4 303 24.4
PSO541G3631 Papaver somniferum HOM05D006350 ORTHO05D007850 7.7e-06 57.4 190 24.7
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 7.7e-06 57.4 198 23.7
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 7.7e-06 57.4 198 23.7
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 7.7e-06 57.4 314 22.6
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 7.7e-06 57.4 309 23.6


User provided reference genes

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