Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-243 846.3 434 100.0
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 2.4e-243 845.1 434 99.8
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 1.9e-240 835.5 434 98.8
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 2.3e-238 828.6 464 93.1
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 4.0e-235 817.8 434 96.3
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 1.3e-228 796.2 447 92.4
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 1.1e-227 793.1 444 92.3
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 2.4e-227 792.0 440 92.5
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 3.1e-227 791.6 445 92.1
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 5.0e-225 784.3 448 91.7
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 5.0e-225 784.3 448 91.7
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 1.2e-223 779.6 445 89.9
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 2.1e-223 778.9 470 87.2
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 8.8e-222 773.5 445 90.1
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 1.1e-219 766.5 445 89.7
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 3.0e-214 748.4 445 87.2
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 3.0e-214 748.4 445 87.2
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 3.2e-208 728.4 445 85.6
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 7.2e-200 700.7 389 94.1
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 3.0e-198 695.3 460 78.7
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 5.0e-185 651.4 442 76.0
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 4.4e-181 638.3 453 74.0
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.7e-180 636.3 451 74.7
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.8e-179 632.9 456 73.5
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 5.4e-179 631.3 456 73.2
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 5.6e-176 621.3 451 72.7
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 5.6e-176 621.3 444 73.9
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 4.4e-173 611.7 449 71.3
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 5.8e-173 611.3 449 71.7
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 1.3e-172 610.1 451 71.2
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 4.9e-172 608.2 457 70.5
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 7.3e-168 594.3 450 69.3
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.6e-167 593.2 444 69.8
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 4.7e-167 591.7 448 71.0
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 8.9e-166 587.4 452 68.8
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.3e-164 583.6 447 68.5
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 6.4e-164 581.3 444 68.5
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.1e-163 580.5 449 69.7
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.9e-163 579.7 450 68.9
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 3.2e-163 578.9 451 69.6
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 3.2e-163 578.9 450 68.7
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 5.4e-163 578.2 440 69.8
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 1.2e-162 577.0 451 68.5
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 2.1e-162 576.2 439 69.2
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 2.1e-162 576.2 451 69.0
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 2.7e-162 575.9 457 72.4
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 2.7e-162 575.9 452 67.7
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 4.6e-162 575.1 418 72.0
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 2.3e-161 572.8 449 68.2
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 8.6e-161 570.9 452 68.6
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 3.3e-160 568.9 438 68.7
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 3.3e-160 568.9 436 69.5
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.2e-159 567.0 450 68.4
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 2.8e-159 565.8 450 68.2
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.6e-159 565.5 438 68.3
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 1.2e-157 560.5 434 69.1
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.5e-157 560.1 452 68.1
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 2.0e-157 559.7 463 67.4
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 3.4e-157 558.9 442 67.9
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.9e-156 555.8 448 66.7
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 6.4e-156 554.7 444 68.9
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.1e-155 553.9 451 66.7
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.1e-155 553.9 434 68.0
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.4e-155 553.5 443 67.0
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 2.4e-155 552.7 449 67.5
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 4.1e-155 552.0 444 68.5
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 4.1e-155 552.0 434 68.0
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 5.4e-155 551.6 437 67.5
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 5.4e-155 551.6 458 66.4
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 7.1e-155 551.2 393 72.0
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 9.2e-155 550.8 452 66.2
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 4.6e-154 548.5 448 66.5
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 2.3e-153 546.2 449 67.5
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 6.6e-153 544.7 445 65.8
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 8.6e-153 544.3 439 66.3
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 4.3e-152 542.0 439 65.8
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 4.3e-152 542.0 445 66.5
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.2e-151 540.4 451 64.5
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 1.6e-151 540.0 426 67.4
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 2.1e-151 539.7 443 67.0
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 2.8e-151 539.3 444 66.7
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.1e-150 537.3 444 66.4
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 1.1e-150 537.3 435 65.3
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 1.4e-150 537.0 424 68.2
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 1.8e-150 536.6 453 64.2
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 4.0e-150 535.4 445 65.2
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 7.6e-149 531.2 443 65.0
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 3.8e-148 528.9 440 63.9
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 6.4e-148 528.1 450 64.4
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.4e-147 526.9 454 63.4
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.4e-147 526.9 449 64.6
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.2e-147 525.4 468 62.2
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 4.2e-147 525.4 410 68.0
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 5.4e-147 525.0 454 64.3
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 2.1e-146 523.1 448 65.0
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 3.5e-146 522.3 447 62.6
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 4.3e-144 515.4 451 63.6
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 5.6e-144 515.0 453 62.9
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 5.6e-144 515.0 451 62.3
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 9.0e-142 507.7 450 61.6
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.5e-141 506.9 427 64.9
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.0e-141 506.5 448 61.2
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 2.6e-141 506.1 411 66.7
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.3e-140 503.8 440 64.1
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.1e-139 500.7 496 58.9
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.5e-136 490.3 453 61.4
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 2.5e-136 489.6 455 60.7
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.6e-135 486.9 437 61.3
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 2.1e-135 486.5 447 60.9
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 2.4e-134 483.0 336 79.5
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 2.4e-134 483.0 450 61.6
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 3.2e-131 472.6 453 59.4
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.3e-127 460.7 444 59.2
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.4e-126 457.2 420 61.2
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 1.3e-124 450.7 446 58.3
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 5.5e-123 445.3 368 65.2
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 6.0e-122 441.8 402 60.9
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 6.0e-122 441.8 424 58.3
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 2.3e-121 439.9 405 61.2
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 6.2e-119 431.8 450 56.7
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 2.8e-111 406.4 469 51.0
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 1.1e-110 404.4 332 62.7
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 9.0e-110 401.4 392 57.1
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.2e-109 401.0 507 48.7
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 1.9e-107 393.7 481 52.2
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 5.5e-107 392.1 472 48.5
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 4.6e-106 389.0 418 54.5
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 7.9e-106 388.3 342 61.4
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 1.4e-105 387.5 243 88.9
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.4e-102 377.5 502 45.8
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 4.2e-99 365.9 435 51.0
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 5.7e-96 355.5 492 43.1
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.1e-88 331.3 372 50.5
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 6.3e-87 325.5 240 67.1
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 3.8e-76 289.7 434 42.2
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 9.4e-75 285.0 177 83.6
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.5e-72 277.7 519 37.0
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 9.8e-72 275.0 181 78.5
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 1.8e-70 270.8 182 78.0
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 7.7e-69 265.4 391 41.2
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 1.2e-66 258.1 175 76.6
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 3.0e-65 253.4 353 45.6
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 9.8e-64 248.4 479 38.6
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 7.8e-53 212.2 389 36.2
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 7.3e-51 205.7 129 78.3
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 2.0e-48 197.6 252 47.6
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 3.9e-44 183.3 377 35.5
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 1.3e-39 168.3 262 39.7
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 3.0e-36 157.1 175 55.4
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 6.6e-36 156.0 117 80.3
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.8e-34 150.6 221 43.4
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 6.8e-33 146.0 117 59.8
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 5.4e-30 136.3 363 33.9
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 3.3e-27 127.1 136 50.0
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 6.9e-25 119.4 89 61.8
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 2.0e-24 117.9 203 43.3
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 9.3e-22 109.0 137 54.0
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 1.2e-21 108.6 131 54.2
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.6e-21 108.2 131 52.7
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 2.7e-21 107.5 138 50.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.5e-19 100.9 167 43.7
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 3.8e-15 87.0 301 26.2
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 2.4e-14 84.3 57 64.9
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 7.1e-14 82.8 62 69.4
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 6.0e-13 79.7 99 43.4
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.6e-10 71.6 81 54.3
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 3.4e-08 63.9 42 71.4
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 7.6e-08 62.8 43 74.4
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 8.4e-07 59.3 50 60.0
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 1.4e-06 58.5 42 71.4
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 1.4e-06 58.5 40 75.0
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.4e-06 58.5 109 33.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.2e-06 57.4 32 87.5


User provided reference genes

Program Settings