Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09928 Brassica carinata HOM05D000104 ORTHO05D021072 9.0e-106 387.1 221 100.0
C04p35080 Brassica napus HOM05D000104 ORTHO05D005891 2.3e-93 345.9 215 94.0
BolC4t25064H Brassica oleracea HOM05D000104 ORTHO05D005891 2.3e-93 345.9 215 94.0
A04p03200 Brassica napus HOM05D000104 ORTHO05D005891 2.1e-54 216.5 143 95.1
BraA04t16042Z Brassica rapa HOM05D000104 ORTHO05D005891 2.1e-54 216.5 143 95.1
Sp5g05300 Schrenkiella parvula HOM05D000104 ORTHO05D005891 4.2e-47 192.2 143 86.0
C08p32710 Brassica napus HOM05D000104 ORTHO05D005891 6.8e-45 184.9 143 82.5
BolC8t50882H Brassica oleracea HOM05D000104 ORTHO05D005891 6.8e-45 184.9 143 82.5
A09p50220 Brassica napus HOM05D000104 ORTHO05D005891 8.8e-45 184.5 143 83.2
BraA09t40472Z Brassica rapa HOM05D000104 ORTHO05D005891 8.8e-45 184.5 143 83.2
Carub.0001s3808 Capsella rubella HOM05D000104 ORTHO05D005891 2.2e-43 179.9 143 72.0
BcaC07g40057 Brassica carinata HOM05D000104 ORTHO05D005891 3.7e-43 179.1 143 81.8
AL5G38840 Arabidopsis lyrata HOM05D000104 ORTHO05D005891 3.5e-41 172.6 143 78.3
AT3G57300 Arabidopsis thaliana HOM05D000104 ORTHO05D005891 3.3e-39 166.0 143 69.2
THA.LOC104801997 Tarenaya hassleriana HOM05D000104 ORTHO05D005891 5.6e-39 165.2 143 67.1
CARHR167500 Cardamine hirsuta HOM05D000104 ORTHO05D005891 1.5e-36 157.1 163 58.3
THA.LOC104817420 Tarenaya hassleriana HOM05D000104 ORTHO05D005891 2.6e-36 156.4 142 65.5
Cpa.g.sc182.16 Carica papaya HOM05D000104 ORTHO05D005891 2.5e-31 139.8 143 57.3
Aa31LG10G12170 Aethionema arabicum HOM05D000104 ORTHO05D005891 4.3e-31 139.0 143 69.2
Potri.016G043500 Populus trichocarpa HOM05D000104 ORTHO05D005891 5.2e-29 132.1 143 55.9
Lalb_Chr01g0017271 Lupinus albus HOM05D000104 ORTHO05D005891 2.6e-28 129.8 143 55.9
ClCG04G003710 Citrullus lanatus HOM05D000104 ORTHO05D005891 5.8e-28 128.6 141 61.7
Lalb_Chr25g0287091 Lupinus albus HOM05D000104 ORTHO05D005891 9.8e-28 127.9 165 49.7
TWI74G1174 Tripterygium wilfordii HOM05D000104 ORTHO05D005891 2.9e-27 126.3 142 53.5
Thecc.05G148000 Theobroma cacao HOM05D000104 ORTHO05D005891 3.7e-27 125.9 143 53.1
TPR.G18256 Trifolium pratense HOM05D000104 ORTHO05D005891 4.9e-27 125.6 165 52.7
Glyma.19G136000 Glycine max HOM05D000104 ORTHO05D005891 1.1e-26 124.4 143 54.5
arahy.Tifrunner.gnm1.ann1.EUAM8L Arachis hypogaea HOM05D000104 ORTHO05D005891 1.9e-26 123.6 144 54.9
Eucgr.A02310 Eucalyptus grandis HOM05D000104 ORTHO05D005891 5.4e-26 122.1 151 49.7
Sed0023310 Sechium edule HOM05D000104 ORTHO05D005891 5.4e-26 122.1 138 50.7
arahy.Tifrunner.gnm1.ann1.JJI54I Arachis hypogaea HOM05D000104 ORTHO05D005891 7.0e-26 121.7 145 54.5
Glyma.03G133700 Glycine max HOM05D000104 ORTHO05D005891 9.2e-26 121.3 143 54.5
TPR.G19660 Trifolium pratense HOM05D000104 ORTHO05D005891 1.6e-25 120.6 166 49.4
CDE02G4214 Ceratophyllum demersum HOM05D000104 ORTHO05D005891 2.0e-25 120.2 143 50.3
Duzib106G2014 Durio zibethinus HOM05D000104 ORTHO05D005891 3.5e-25 119.4 143 51.0
Potri.006G047100 Populus trichocarpa HOM05D000104 ORTHO05D005891 3.5e-25 119.4 144 52.1
Phvul.001G129200 Phaseolus vulgaris HOM05D000104 ORTHO05D005891 4.6e-25 119.0 166 48.8
Medtr7g090960 Medicago truncatula HOM05D000104 ORTHO05D005891 7.8e-25 118.2 165 50.9
Sabra06G0032800 Salix brachista HOM05D000104 ORTHO05D005891 7.8e-25 118.2 142 53.5
VMungo1383G1381 Vigna mungo HOM05D000104 ORTHO05D005891 2.3e-24 116.7 166 47.0
Lj1g0026239 Lotus japonicus HOM05D000104 ORTHO05D005891 3.9e-24 115.9 165 49.1
Manes.09G018100 Manihot esculenta HOM05D000104 ORTHO05D005891 6.6e-24 115.2 144 52.1
Psat6g121600 Pisum sativum HOM05D000104 ORTHO05D005891 1.9e-23 113.6 166 47.6
TAR369G0737 Trochodendron aralioides HOM05D000104 ORTHO05D005891 7.3e-23 111.7 144 52.1
arahy.Tifrunner.gnm1.ann1.KD6P16 Arachis hypogaea HOM05D000104 ORTHO05D005891 9.5e-23 111.3 142 53.5
TAR369G0997 Trochodendron aralioides HOM05D000104 ORTHO05D005891 9.5e-23 111.3 144 52.1
arahy.Tifrunner.gnm1.ann1.NU01L9 Arachis hypogaea HOM05D000104 ORTHO05D005891 1.2e-22 110.9 142 53.5
Aqoxy5G00045 Aquilegia oxysepala HOM05D000104 ORTHO05D005891 1.6e-22 110.5 142 50.0
Thhalv10005740m.g Eutrema salsugineum HOM05D000104 ORTHO05D005891 2.1e-22 110.2 123 69.9
Gohir.A09G121000 Gossypium hirsutum HOM05D000104 ORTHO05D005891 2.1e-22 110.2 143 50.3
Gohir.D09G117100 Gossypium hirsutum HOM05D000104 ORTHO05D005891 2.1e-22 110.2 143 50.3
Gorai.006G135500 Gossypium raimondii HOM05D000104 ORTHO05D005891 2.1e-22 110.2 143 50.3
CsaV3_4G027520 Cucumis sativus L. HOM05D000104 ORTHO05D005891 2.8e-22 109.8 143 49.0
MELO3C026332.2 Cucumis melo HOM05D000104 ORTHO05D005891 8.1e-22 108.2 143 49.0
Nn7g36404 Nelumbo nucifera HOM05D000104 ORTHO05D005891 1.1e-21 107.8 144 50.7
Glyma.10G106500 Glycine max HOM05D000104 ORTHO05D005891 1.8e-21 107.1 165 46.7
Ca_12259_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005891 2.3e-21 106.7 166 47.0
Zm00001eb394610 Zea mays HOM05D000104 ORTHO05D005891 2.3e-21 106.7 143 49.0
Atru.chr1.1229 Acer truncatum HOM05D000104 ORTHO05D005891 4.0e-21 105.9 143 48.3
MD11G1158800 Malus domestica HOM05D000104 ORTHO05D005891 4.0e-21 105.9 144 47.2
QL07p003748 Quercus lobata HOM05D000104 ORTHO05D005891 1.2e-20 104.4 146 47.3
Ca_08427_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005891 2.6e-20 103.2 166 46.4
Haze_19788 Corylus avellana HOM05D000104 ORTHO05D005891 2.6e-20 103.2 143 49.7
Nitab4.5_0000636g0030 Nicotiana tabacum HOM05D000104 ORTHO05D005891 2.6e-20 103.2 143 46.2
MD03G1136600 Malus domestica HOM05D000104 ORTHO05D005891 4.4e-20 102.4 144 47.2
Psat3g074520 Pisum sativum HOM05D000104 ORTHO05D005891 4.4e-20 102.4 165 47.9
Peaxi162Scf00130g00834 Petunia axillaris HOM05D000104 ORTHO05D005891 9.8e-20 101.3 142 48.6
Cc06_g18110 Coffea canephora HOM05D000104 ORTHO05D005891 2.2e-19 100.1 143 46.2
Prupe.7G053300 Prunus persica HOM05D000104 ORTHO05D005891 6.4e-19 98.6 143 46.2
HPP92_006700 Vanilla planifolia HOM05D000104 ORTHO05D005891 8.3e-19 98.2 143 47.6
Lj1C1125T8 Lonicera japonica HOM05D000104 ORTHO05D005891 1.1e-18 97.8 145 48.3
Lalb_Chr21g0316591 Lupinus albus HOM05D000104 ORTHO05D005891 3.2e-18 96.3 164 44.5
Zm00001eb017000 Zea mays HOM05D000104 ORTHO05D005891 4.1e-18 95.9 165 41.8
BcaC07g40059 Brassica carinata HOM05D000104 ORTHO05D021072 7.1e-18 95.1 73 71.2
Cfa016778 Carpinus fangiana HOM05D000104 ORTHO05D005891 7.1e-18 95.1 144 47.2
CAN.G1237.14 Capsicum annuum HOM05D000104 ORTHO05D005891 1.7e-16 90.5 143 46.9
MBI13_g30332_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005891 2.3e-16 90.1 145 47.6
CiPaw.10G035500 Carya illinoinensis HOM05D000104 ORTHO05D005891 3.0e-16 89.7 145 46.2
HanXRQChr10g0292021 Helianthus annuus HOM05D000104 ORTHO05D005891 3.0e-16 89.7 142 46.5
Pp3c1_3340 Physcomitrium patens HOM05D000104 ORTHO05D005891 3.9e-16 89.4 143 39.2
Haze_19790 Corylus avellana HOM05D000104 ORTHO05D005891 5.1e-16 89.0 76 65.8
Nn2g15125 Nelumbo nucifera HOM05D000104 ORTHO05D005891 6.6e-16 88.6 144 46.5
CSS0030896 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005891 8.6e-16 88.2 144 45.8
SEGI_10397 Sequoiadendron giganteum HOM05D000104 ORTHO05D005891 1.1e-15 87.8 142 40.1
Dinv18670 Davidia involucrata HOM05D000104 ORTHO05D005891 1.9e-15 87.0 144 46.5
Dinv39659 Davidia involucrata HOM05D000104 ORTHO05D005891 1.9e-15 87.0 144 45.8
TAR623G0750 Trochodendron aralioides HOM05D000104 ORTHO05D005891 2.5e-15 86.7 144 46.5
CiPaw.09G040400 Carya illinoinensis HOM05D000104 ORTHO05D005891 5.6e-15 85.5 144 43.8
Hma1.2p1_0110F.1_g052850 Hydrangea macrophylla HOM05D000104 ORTHO05D005891 7.3e-15 85.1 144 45.8
Hma1.2p1_1997F.1_g310440 Hydrangea macrophylla HOM05D000104 ORTHO05D005891 7.3e-15 85.1 144 45.8
Pp3c2_32500 Physcomitrium patens HOM05D000104 ORTHO05D005891 9.5e-15 84.7 91 45.1
Pp3c2_32501 Physcomitrium patens HOM05D000104 ORTHO05D005891 9.5e-15 84.7 91 45.1
Mapoly0077s0055 Marchantia polymorpha HOM05D000104 ORTHO05D005891 2.1e-14 83.6 86 48.8
Solyc04g016370.3 Solanum lycopersicum HOM05D000104 ORTHO05D005891 2.8e-14 83.2 143 44.8
Sopen04g008460 Solanum pennellii HOM05D000104 ORTHO05D005891 2.8e-14 83.2 143 44.8
Migut.K00102 Erythranthe guttata HOM05D000104 ORTHO05D005891 3.6e-14 82.8 142 45.1
Actinidia39201 Actinidia chinensis HOM05D000104 ORTHO05D005891 4.7e-14 82.4 76 63.2
Ciclev10004142m.g Citrus clementina HOM05D000104 ORTHO05D005891 4.7e-14 82.4 143 45.5
Nitab4.5_0001618g0170 Nicotiana tabacum HOM05D000104 ORTHO05D005891 6.2e-14 82.0 143 44.8
Actinidia09301 Actinidia chinensis HOM05D000104 ORTHO05D005891 1.1e-13 81.3 144 45.1
RcHm_v2.0_Chr3g0483871 Rosa chinensis HOM05D000104 ORTHO05D005891 1.1e-13 81.3 144 47.2
SalBow1G3151 Salvia bowleyana HOM05D000104 ORTHO05D005891 1.8e-13 80.5 143 44.1
AUR62024511 Chenopodium quinoa HOM05D000104 ORTHO05D005891 2.3e-13 80.1 143 38.5
GSVIVG01033231001 Vitis vinifera HOM05D000104 ORTHO05D005891 4.0e-13 79.3 144 39.6
AUR62026097 Chenopodium quinoa HOM05D000104 ORTHO05D005891 8.9e-13 78.2 147 37.4
SGA_v2.0_scaffold94G28495 Striga asiatica HOM05D000104 ORTHO05D005891 2.6e-12 76.6 142 45.1
Nitab4.5_0000826g0080 Nicotiana tabacum HOM05D000104 ORTHO05D005891 3.4e-12 76.3 145 43.4
TWI53G0966 Tripterygium wilfordii HOM05D000104 ORTHO05D005891 4.4e-12 75.9 142 45.1
HanXRQChr01g0009101 Helianthus annuus HOM05D000104 ORTHO05D005891 7.6e-12 75.1 143 42.7
vmacro21967 Vaccinium macrocarpon HOM05D000104 ORTHO05D005891 9.9e-12 74.7 144 42.4
Rhsim03G0029000 Rhododendron simsii HOM05D000104 ORTHO05D005891 1.3e-11 74.3 144 42.4
FAN09G4422 Fragaria x ananassa HOM05D000104 ORTHO05D005891 2.2e-11 73.6 144 42.4
FAN02G4202 Fragaria x ananassa HOM05D000104 ORTHO05D005891 2.9e-11 73.2 143 42.7
FAN05G2243 Fragaria x ananassa HOM05D000104 ORTHO05D005891 2.9e-11 73.2 164 40.2
FvH4_6g24570 Fragaria vesca HOM05D000104 ORTHO05D005891 3.8e-11 72.8 144 42.4
FAN14G5411 Fragaria x ananassa HOM05D000104 ORTHO05D005891 3.8e-11 72.8 144 42.4
PSO339G5863 Papaver somniferum HOM05D000104 ORTHO05D005891 4.9e-11 72.4 143 39.9
EL10Ac3g07138 Beta vulgaris HOM05D000104 ORTHO05D005891 1.1e-10 71.2 143 40.6
ECA248G3812 Erigeron canadensis HOM05D000104 ORTHO05D005891 1.4e-10 70.9 143 40.6
PSO384G1272 Papaver somniferum HOM05D000104 ORTHO05D005891 1.9e-10 70.5 143 39.2
Sed0002389 Sechium edule HOM05D000104 ORTHO05D005891 4.1e-10 69.3 143 39.9
Hund19132 Selenicereus undatus HOM05D000104 ORTHO05D005891 9.2e-10 68.2 143 39.9
Os03g0352500 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D005891 1.2e-09 67.8 144 40.3
Sc19g0008530 Simmondsia chinensis HOM05D000104 ORTHO05D005891 1.2e-09 67.8 143 40.6
PGR004G1210 Punica granatum HOM05D000104 ORTHO05D005891 1.6e-09 67.4 120 42.5
DCAR_013037 Daucus carota HOM05D000104 ORTHO05D005891 2.1e-09 67.0 143 42.7
Lsat_1_v5_gn_5_160760 Lactuca sativa HOM05D000104 ORTHO05D005891 2.1e-09 67.0 143 40.6
SpUn0001_1020 Schrenkiella parvula HOM05D000104 ORTHO05D021072 2.1e-09 67.0 65 55.4
MSTRG.10809 Avicennia marina HOM05D000104 ORTHO05D005891 3.5e-09 66.2 143 38.5
Oeu017927.1 Olea europaea HOM05D000104 ORTHO05D005891 3.5e-09 66.2 142 39.4
SMO164G0038 Selaginella moellendorffii HOM05D000104 ORTHO05D005891 4.6e-09 65.9 143 35.7
Ah.04g151440 Amaranthus hybridus HOM05D002616 ORTHO05D005891 5.1e-08 62.4 75 52.0
ATR0721G053 Amborella trichopoda HOM05D000104 ORTHO05D005891 5.1e-08 62.4 78 55.1


User provided reference genes

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