Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09748 Brassica carinata HOM05D006053 ORTHO05D023845 2.6e-135 485.3 239 100.0
BolC4t25272H Brassica oleracea HOM05D006053 ORTHO05D023845 1.7e-105 386.3 191 100.0
Sp5g07130 Schrenkiella parvula HOM05D006053 ORTHO05D008381 2.6e-74 282.7 267 59.9
C04p37180 Brassica napus HOM05D006053 ORTHO05D023845 1.4e-67 260.4 131 97.7
Thhalv10010257m.g Eutrema salsugineum HOM05D006053 ORTHO05D008381 3.6e-60 235.7 183 66.7
AT3G55340 Arabidopsis thaliana HOM05D006053 ORTHO05D008381 4.0e-59 232.3 276 49.3
C08p30500 Brassica napus HOM05D006053 ORTHO05D008381 6.0e-55 218.4 181 65.2
BolC8t50669H Brassica oleracea HOM05D006053 ORTHO05D008381 6.0e-55 218.4 181 65.2
AL5G36480 Arabidopsis lyrata HOM05D006053 ORTHO05D008381 2.3e-54 216.5 178 62.4
Carub.0005s2199 Capsella rubella HOM05D006053 ORTHO05D008381 1.8e-51 206.8 176 59.7
BcaB01g00113 Brassica carinata HOM05D006053 ORTHO05D008381 1.7e-49 200.3 338 41.1
A09p48230 Brassica napus HOM05D006053 ORTHO05D008381 6.4e-49 198.4 181 60.2
BraA09t40276Z Brassica rapa HOM05D006053 ORTHO05D008381 6.4e-49 198.4 181 60.2
CARHR165350 Cardamine hirsuta HOM05D006053 ORTHO05D008381 3.6e-36 156.0 263 43.0
A04p04600 Brassica napus HOM05D006053 ORTHO05D023845 3.5e-31 139.4 108 68.5
Aa31LG10G10350 Aethionema arabicum HOM05D006053 ORTHO05D008381 2.7e-23 113.2 242 36.4
HanXRQChr09g0247701 Helianthus annuus HOM05D006053 ORTHO05D008381 4.2e-16 89.4 228 34.2
RcHm_v2.0_Chr1g0365851 Rosa chinensis HOM05D006053 ORTHO05D008381 7.1e-16 88.6 214 34.1
FAN03G0601 Fragaria x ananassa HOM05D006053 ORTHO05D008381 9.3e-16 88.2 193 37.3
FvH4_7g21531 Fragaria vesca HOM05D006053 ORTHO05D008381 1.2e-15 87.8 193 37.3
FAN06G4406 Fragaria x ananassa HOM05D006053 ORTHO05D008381 1.2e-15 87.8 193 37.3
MD01G1122100 Malus domestica HOM05D006053 ORTHO05D008381 1.6e-15 87.4 227 31.7
FAN06G2982 Fragaria x ananassa HOM05D006053 ORTHO05D008381 2.1e-15 87.0 193 35.8
FAN10G2741 Fragaria x ananassa HOM05D006053 ORTHO05D008381 4.6e-15 85.9 193 36.8
FAN01G1874 Fragaria x ananassa HOM05D006053 ORTHO05D008381 1.0e-14 84.7 193 35.2
BraA04t16169Z Brassica rapa HOM05D006053 ORTHO05D023845 1.3e-14 84.3 43 93.0
COL.COLO4_14945 Corchorus olitorius HOM05D006053 ORTHO05D008381 3.9e-14 82.8 256 30.5
BcaB02g08428 Brassica carinata HOM05D006053 ORTHO05D008381 1.1e-13 81.3 98 45.9
MD07G1191600 Malus domestica HOM05D006053 ORTHO05D008381 5.7e-13 79.0 225 30.2
Gohir.A10G214200 Gossypium hirsutum HOM05D006053 ORTHO05D008381 7.4e-13 78.6 256 29.3
Gorai.011G253900 Gossypium raimondii HOM05D006053 ORTHO05D008381 1.3e-12 77.8 210 30.5
Gohir.D10G223000 Gossypium hirsutum HOM05D006053 ORTHO05D008381 1.6e-12 77.4 210 30.5
Lsat_1_v5_gn_9_66300 Lactuca sativa HOM05D006053 ORTHO05D008381 1.8e-11 73.9 187 33.7
THA.LOC104824082 Tarenaya hassleriana HOM05D006053 ORTHO05D008381 5.3e-11 72.4 156 38.5
MSTRG.23542 Avicennia marina HOM05D006053 ORTHO05D008381 3.4e-10 69.7 207 29.5
CiPaw.02G181100 Carya illinoinensis HOM05D006053 ORTHO05D008381 4.5e-10 69.3 166 35.5
Hund20006 Selenicereus undatus HOM05D006053 ORTHO05D008381 4.5e-10 69.3 158 36.7
Duzib114G0287 Durio zibethinus HOM05D006053 ORTHO05D008381 5.9e-10 68.9 227 28.2
CSS0026153 Camellia sinensis var. sinensis HOM05D006053 ORTHO05D008381 1.0e-09 68.2 205 28.8
Potri.010G209701 Populus trichocarpa HOM05D006053 ORTHO05D008381 1.0e-09 68.2 151 35.8
Sed0000212 Sechium edule HOM05D006053 ORTHO05D008381 1.0e-09 68.2 212 32.1
unitig_699.g19587 Utricularia gibba HOM05D006053 ORTHO05D008381 1.7e-09 67.4 156 34.0
ECA232G2518 Erigeron canadensis HOM05D006053 ORTHO05D008381 2.2e-09 67.0 239 27.2
Manes.10G035900 Manihot esculenta HOM05D006053 ORTHO05D008381 5.0e-09 65.9 166 31.9
Ciclev10031409m.g Citrus clementina HOM05D006053 ORTHO05D008381 1.1e-08 64.7 162 35.2
Dinv25975 Davidia involucrata HOM05D006053 ORTHO05D008381 1.1e-08 64.7 107 38.3
Hma1.2p1_0192F.1_g083600 Hydrangea macrophylla HOM05D006053 ORTHO05D008381 1.1e-08 64.7 109 38.5
Thecc.10G048700 Theobroma cacao HOM05D006053 ORTHO05D008381 1.9e-08 63.9 159 34.6
Lj5g0015550 Lotus japonicus HOM05D006053 ORTHO05D008381 3.2e-08 63.2 179 30.2
QL08p058728 Quercus lobata HOM05D006053 ORTHO05D008381 3.2e-08 63.2 166 32.5
Actinidia02973 Actinidia chinensis HOM05D006053 ORTHO05D008381 4.2e-08 62.8 150 34.7
Cfa001523 Carpinus fangiana HOM05D006053 ORTHO05D008381 4.2e-08 62.8 158 32.3
PSO339G3195 Papaver somniferum HOM05D006053 ORTHO05D008381 4.2e-08 62.8 194 32.0
Cc02_g08350 Coffea canephora HOM05D006053 ORTHO05D008381 7.2e-08 62.0 104 36.5
Migut.L00294 Erythranthe guttata HOM05D006053 ORTHO05D008381 7.2e-08 62.0 117 35.9
Sabra10G0162000 Salix brachista HOM05D006053 ORTHO05D008381 1.2e-07 61.2 149 31.5
Sc20g0002520 Simmondsia chinensis HOM05D006053 ORTHO05D008381 1.6e-07 60.8 151 34.4
PGSC0003DMG400031213 Solanum tuberosum HOM05D006053 ORTHO05D008381 1.6e-07 60.8 102 37.3
Atru.chr12.522 Acer truncatum HOM05D006053 ORTHO05D008381 2.1e-07 60.5 149 32.2
Eucgr.G02908 Eucalyptus grandis HOM05D006053 ORTHO05D008381 2.1e-07 60.5 116 31.9
MELO3C023836.2 Cucumis melo HOM05D006053 ORTHO05D008381 3.6e-07 59.7 154 31.8
DCAR_015208 Daucus carota HOM05D006053 ORTHO05D008381 3.6e-07 59.7 104 37.5
Lj8C88T8 Lonicera japonica HOM05D006053 ORTHO05D008381 3.6e-07 59.7 110 37.3
Nitab4.5_0000120g0180 Nicotiana tabacum HOM05D006053 ORTHO05D008381 4.6e-07 59.3 102 39.2
Nitab4.5_0001277g0050 Nicotiana tabacum HOM05D006053 ORTHO05D008381 4.6e-07 59.3 149 32.2
Oeu056126.3 Olea europaea HOM05D006053 ORTHO05D008381 7.9e-07 58.5 150 33.3
Solyc06g018110.3 Solanum lycopersicum HOM05D006053 ORTHO05D008381 7.9e-07 58.5 150 32.0
Sopen06g008460 Solanum pennellii HOM05D006053 ORTHO05D008381 7.9e-07 58.5 150 32.0
Prupe.2G229600 Prunus persica HOM05D006053 ORTHO05D008381 1.0e-06 58.2 110 35.5
CsaV3_5G006870 Cucumis sativus L. HOM05D006053 ORTHO05D008381 1.4e-06 57.8 149 30.9
PGR142G2322 Punica granatum HOM05D006053 ORTHO05D008381 1.4e-06 57.8 161 28.0
Nn2g10473 Nelumbo nucifera HOM05D006053 ORTHO05D008381 1.8e-06 57.4 156 29.5
PSO384G4800 Papaver somniferum HOM05D006053 ORTHO05D008381 2.3e-06 57.0 194 29.9
Ah.16g107460 Amaranthus hybridus HOM05D006053 ORTHO05D008381 3.0e-06 56.6 156 30.8
Cpa.g.sc1.353 Carica papaya HOM05D006053 ORTHO05D008381 3.0e-06 56.6 159 33.3
arahy.Tifrunner.gnm1.ann1.AZ4556 Arachis hypogaea HOM05D006053 ORTHO05D008381 5.1e-06 55.8 113 32.7
ClCG07G003140 Citrullus lanatus HOM05D006053 ORTHO05D008381 6.7e-06 55.5 119 36.1
AUR62038385 Chenopodium quinoa HOM05D006053 ORTHO05D008381 8.8e-06 55.1 150 31.3
AUR62038388 Chenopodium quinoa HOM05D006053 ORTHO05D008381 8.8e-06 55.1 150 31.3
GSVIVG01016604001 Vitis vinifera HOM05D006053 ORTHO05D008381 8.8e-06 55.1 157 33.1


User provided reference genes

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