Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09300 Brassica carinata HOM05D001724 ORTHO05D007284 8.3e-85 317.0 160 100.0
C01p51890 Brassica napus HOM05D001724 ORTHO05D007284 2.8e-64 248.8 165 79.4
A01p40360 Brassica napus HOM05D001724 ORTHO05D007284 1.4e-63 246.5 165 78.8
BolC1t05137H Brassica oleracea HOM05D001724 ORTHO05D007284 4.0e-63 245.0 165 78.8
BraA01t04071Z Brassica rapa HOM05D001724 ORTHO05D007284 4.0e-63 245.0 165 78.2
Thhalv10020504m.g Eutrema salsugineum HOM05D001724 ORTHO05D007284 8.9e-63 243.8 165 77.0
Sp3g11360 Schrenkiella parvula HOM05D001724 ORTHO05D007284 5.8e-62 241.1 165 77.0
A02p30970 Brassica napus HOM05D001724 ORTHO05D007284 1.9e-60 236.1 174 74.7
AT3G13180 Arabidopsis thaliana HOM05D001724 ORTHO05D007284 7.8e-59 230.7 165 73.9
Aa31LG8G390 Aethionema arabicum HOM05D001724 ORTHO05D007284 1.3e-58 229.9 177 68.9
AL3G24930 Arabidopsis lyrata HOM05D001724 ORTHO05D007284 6.6e-58 227.6 165 73.3
CARHR087770 Cardamine hirsuta HOM05D001724 ORTHO05D007284 1.1e-57 226.9 162 73.5
Carub.0003s1253 Capsella rubella HOM05D001724 ORTHO05D007284 3.6e-56 221.9 165 70.3
BolC8t48798H Brassica oleracea HOM05D001724 ORTHO05D007284 7.1e-52 207.6 148 78.4
Cpa.g.sc12.118 Carica papaya HOM05D001724 ORTHO05D007284 6.0e-51 204.5 165 62.4
THA.LOC104815694 Tarenaya hassleriana HOM05D001724 ORTHO05D007284 2.3e-50 202.6 165 63.0
Ciclev10010260m.g Citrus clementina HOM05D001724 ORTHO05D007284 6.6e-50 201.1 165 63.6
Atru.BG.138.p Acer truncatum HOM05D001724 ORTHO05D007284 8.6e-50 200.7 163 62.0
C06p32310 Brassica napus HOM05D001724 ORTHO05D007284 1.5e-49 199.9 154 73.4
TPR.G8601 Trifolium pratense HOM05D001724 ORTHO05D007284 1.5e-49 199.9 165 61.8
C08p11210 Brassica napus HOM05D001724 ORTHO05D007284 1.9e-49 199.5 142 76.1
QL08p003952 Quercus lobata HOM05D001724 ORTHO05D007284 1.9e-49 199.5 163 63.8
Haze_09831 Corylus avellana HOM05D001724 ORTHO05D007284 2.5e-49 199.1 165 63.6
FAN25G0452 Fragaria x ananassa HOM05D001724 ORTHO05D007284 3.3e-49 198.7 165 63.0
FvH4_3g42960 Fragaria vesca HOM05D001724 ORTHO05D007284 4.3e-49 198.4 165 63.0
FAN11G2991 Fragaria x ananassa HOM05D001724 ORTHO05D007284 4.3e-49 198.4 165 63.0
FAN21G0812 Fragaria x ananassa HOM05D001724 ORTHO05D007284 4.3e-49 198.4 165 63.0
RcHm_v2.0_Chr5g0077011 Rosa chinensis HOM05D001724 ORTHO05D007284 5.6e-49 198.0 165 61.2
Sabra16G0241600 Salix brachista HOM05D001724 ORTHO05D007284 7.3e-49 197.6 164 61.0
Sopen12g007630 Solanum pennellii HOM05D001724 ORTHO05D007284 9.5e-49 197.2 163 60.7
PGSC0003DMG402029795 Solanum tuberosum HOM05D001724 ORTHO05D007284 9.5e-49 197.2 163 61.3
CiPaw.12G138600 Carya illinoinensis HOM05D001724 ORTHO05D007284 1.2e-48 196.8 162 61.7
TAR629G2623 Trochodendron aralioides HOM05D001724 ORTHO05D007284 1.6e-48 196.4 165 62.4
Solyc12g015710.2 Solanum lycopersicum HOM05D001724 ORTHO05D007284 2.8e-48 195.7 163 60.7
Nitab4.5_0000163g0170 Nicotiana tabacum HOM05D001724 ORTHO05D007284 3.6e-48 195.3 163 60.7
VMungo0647G0703 Vigna mungo HOM05D001724 ORTHO05D007284 4.7e-48 194.9 160 62.5
Ca_06399_v3 Cicer arietinum L. HOM05D001724 ORTHO05D007284 6.2e-48 194.5 165 61.2
FAN16G2293 Fragaria x ananassa HOM05D001724 ORTHO05D007284 6.2e-48 194.5 165 62.4
Hma1.2p1_2829F.1_g329190 Hydrangea macrophylla HOM05D001724 ORTHO05D007284 6.2e-48 194.5 163 62.0
Phvul.008G279400 Phaseolus vulgaris HOM05D001724 ORTHO05D007284 8.1e-48 194.1 162 62.3
Gohir.D01G062200 Gossypium hirsutum HOM05D001724 ORTHO05D007284 1.1e-47 193.7 165 60.0
Gorai.002G100800 Gossypium raimondii HOM05D001724 ORTHO05D007284 1.1e-47 193.7 165 60.0
Gohir.A01G092000 Gossypium hirsutum HOM05D001724 ORTHO05D007284 1.4e-47 193.4 165 60.0
Medtr5g096020 Medicago truncatula HOM05D001724 ORTHO05D007284 1.8e-47 193.0 165 60.6
MD03G1027000 Malus domestica HOM05D001724 ORTHO05D007284 3.1e-47 192.2 159 61.0
Nitab4.5_0010137g0010 Nicotiana tabacum HOM05D001724 ORTHO05D007284 4.0e-47 191.8 163 60.1
Eucgr.F03687 Eucalyptus grandis HOM05D001724 ORTHO05D007284 5.2e-47 191.4 174 57.5
Lj8C179G13 Lonicera japonica HOM05D001724 ORTHO05D007284 5.2e-47 191.4 163 59.5
Prupe.6G024300 Prunus persica HOM05D001724 ORTHO05D007284 5.2e-47 191.4 165 59.4
COL.COLO4_09842 Corchorus olitorius HOM05D001724 ORTHO05D007284 6.8e-47 191.0 165 60.0
CANSAT11G0717 Cannabis sativa HOM05D001724 ORTHO05D007284 8.9e-47 190.7 163 61.3
Lalb_Chr10g0107431 Lupinus albus HOM05D001724 ORTHO05D007284 1.2e-46 190.3 165 60.6
Thecc.07G012400 Theobroma cacao HOM05D001724 ORTHO05D007284 1.2e-46 190.3 165 60.0
Manes.15G059300 Manihot esculenta HOM05D001724 ORTHO05D007284 1.5e-46 189.9 162 60.5
Psat2g007080 Pisum sativum HOM05D001724 ORTHO05D007284 2.0e-46 189.5 164 59.8
LjContig00081g0019548 Lotus japonicus HOM05D001724 ORTHO05D007284 5.8e-46 188.0 163 60.7
MSTRG.15797 Avicennia marina HOM05D001724 ORTHO05D007284 7.6e-46 187.6 163 58.9
Cc05_g15000 Coffea canephora HOM05D001724 ORTHO05D007284 9.9e-46 187.2 175 54.9
Duzib268G0190 Durio zibethinus HOM05D001724 ORTHO05D007284 1.3e-45 186.8 165 58.8
Glyma.02G301000 Glycine max HOM05D001724 ORTHO05D007284 1.7e-45 186.4 165 60.0
PSO541G6316 Papaver somniferum HOM05D001724 ORTHO05D007284 2.9e-45 185.7 162 59.3
PGR031G2084 Punica granatum HOM05D001724 ORTHO05D007284 6.4e-45 184.5 165 58.2
DCAR_022608 Daucus carota HOM05D001724 ORTHO05D007284 8.4e-45 184.1 163 57.7
vmacro11596 Vaccinium macrocarpon HOM05D001724 ORTHO05D007284 1.4e-44 183.3 165 57.0
Peaxi162Scf00006g00319 Petunia axillaris HOM05D001724 ORTHO05D007284 1.9e-44 183.0 160 58.8
TWI56G0926 Tripterygium wilfordii HOM05D001724 ORTHO05D007284 2.4e-44 182.6 174 55.2
Ah.04g166610 Amaranthus hybridus HOM05D001724 ORTHO05D007284 5.4e-44 181.4 161 58.4
GSVIVG01014695001 Vitis vinifera HOM05D001724 ORTHO05D007284 7.1e-44 181.0 172 55.8
Aqoxy4G02217 Aquilegia oxysepala HOM05D001724 ORTHO05D007284 1.2e-43 180.3 165 56.4
SalBow8G2422 Salvia bowleyana HOM05D001724 ORTHO05D007284 2.7e-43 179.1 163 58.3
ATR0751G043 Amborella trichopoda HOM05D001724 ORTHO05D007284 3.5e-43 178.7 163 55.2
BcaB04g21001 Brassica carinata HOM05D001724 ORTHO05D007284 3.5e-43 178.7 152 69.7
AUR62036465 Chenopodium quinoa HOM05D001724 ORTHO05D007284 4.6e-43 178.3 163 55.8
Hund01886 Selenicereus undatus HOM05D001724 ORTHO05D007284 7.8e-43 177.6 171 56.1
Oeu049406.1 Olea europaea HOM05D001724 ORTHO05D007284 1.0e-42 177.2 159 56.6
Rhsim06G0230500 Rhododendron simsii HOM05D001724 ORTHO05D007284 1.7e-42 176.4 163 55.8
EL10Ac4g07557 Beta vulgaris HOM05D001724 ORTHO05D007284 1.9e-41 172.9 162 56.2
CSS0036592 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D007284 1.9e-41 172.9 152 58.6
Cfa020185 Carpinus fangiana HOM05D001724 ORTHO05D007284 3.3e-41 172.2 147 60.5
HPP92_018204 Vanilla planifolia HOM05D001724 ORTHO05D007284 3.3e-41 172.2 163 53.4
ECA236G1337 Erigeron canadensis HOM05D001724 ORTHO05D007284 4.3e-41 171.8 162 53.7
Migut.M01648 Erythranthe guttata HOM05D001724 ORTHO05D007284 9.6e-41 170.6 163 54.6
SGA_v2.0_scaffold168G38565 Striga asiatica HOM05D001724 ORTHO05D007284 1.6e-40 169.9 163 55.8
unitig_746.g26709 Utricularia gibba HOM05D001724 ORTHO05D007284 2.1e-40 169.5 162 55.6
HanXRQChr15g0492631 Helianthus annuus HOM05D001724 ORTHO05D007284 3.1e-39 165.6 164 54.3
BcaC07g38372 Brassica carinata HOM05D001724 ORTHO05D007284 9.0e-39 164.1 160 60.0
Os09g0477900 Oryza sativa ssp. japonica HOM05D001724 ORTHO05D007284 9.0e-39 164.1 164 50.6
AUR62017112 Chenopodium quinoa HOM05D001724 ORTHO05D007284 9.9e-38 160.6 163 53.4
BolC6t38353H Brassica oleracea HOM05D001724 ORTHO05D007284 1.3e-37 160.2 127 71.7
Atru.chr2.2823 Acer truncatum HOM05D001724 ORTHO05D007284 6.4e-37 157.9 125 63.2
BcaC08g45550 Brassica carinata HOM05D001724 ORTHO05D007284 4.6e-35 151.8 81 93.8
Lsat_1_v5_gn_7_114320 Lactuca sativa HOM05D001724 ORTHO05D007284 2.3e-34 149.4 147 51.0
SEGI_07558 Sequoiadendron giganteum HOM05D001724 ORTHO05D007284 7.6e-30 134.4 162 43.8
FvH4_3g43190 Fragaria vesca HOM05D001724 ORTHO05D007284 1.7e-29 133.3 121 57.9
AagrBONN_evm.TU.Sc2ySwM_344.5083 Anthoceros agrestis HOM05D001724 ORTHO05D007284 8.4e-29 131.0 160 43.1
Glyma.14G013102 Glycine max HOM05D001724 ORTHO05D007284 8.4e-29 131.0 129 53.5
Pp3c27_2290 Physcomitrium patens HOM05D001724 ORTHO05D007284 9.3e-28 127.5 163 42.9
Mapoly0080s0050 Marchantia polymorpha HOM05D001724 ORTHO05D007284 2.1e-27 126.3 160 42.5
PSO675G5997 Papaver somniferum HOM05D001724 ORTHO05D007284 2.1e-27 126.3 110 60.0
BraA02t08108Z Brassica rapa HOM05D001724 ORTHO05D007284 2.7e-27 125.9 97 71.1
MBI14_g06712_MAGBIO Magnolia biondii HOM05D000053 ORTHO05D000035 1.0e-26 124.0 115 55.7
Actinidia30393 Actinidia chinensis HOM05D001724 ORTHO05D007284 3.9e-26 122.1 112 58.0
SMO133G0033 Selaginella moellendorffii HOM05D001724 ORTHO05D007284 5.1e-26 121.7 160 40.6
Dinv10341 Davidia involucrata HOM05D001724 ORTHO05D007284 1.9e-25 119.8 90 63.3
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 8.1e-24 114.4 160 40.0
Sc03g0011450 Simmondsia chinensis HOM05D001724 ORTHO05D007284 1.2e-22 110.5 81 67.9
Zm00001eb101440 Zea mays HOM05D001724 ORTHO05D007284 4.9e-21 105.1 82 61.0
FvH4_3g43140 Fragaria vesca HOM05D001724 ORTHO05D007284 1.9e-20 103.2 103 54.4
MBI14_g25881_MAGBIO Magnolia biondii HOM05D001724 ORTHO05D007284 5.5e-20 101.7 104 50.0
BolC6t37573H Brassica oleracea HOM05D001724 ORTHO05D007284 3.5e-19 99.0 72 73.6
MBI14_g40314_MAGBIO Magnolia biondii HOM05D001724 ORTHO05D007284 7.9e-19 97.8 104 49.0
CAN.G325.3 Capsicum annuum HOM05D001724 ORTHO05D007284 5.1e-18 95.1 91 53.8
RcHm_v2.0_Chr4g0425531 Rosa chinensis HOM05D001724 ORTHO05D007284 8.7e-18 94.4 82 58.5
Oeu049377.1 Olea europaea HOM05D001724 ORTHO05D007284 1.6e-16 90.1 67 65.7
RcHm_v2.0_Chr4g0406341 Rosa chinensis HOM05D001724 ORTHO05D007284 3.7e-16 89.0 82 56.1
Cre50.g761447 Chlamydomonas reinhardtii HOM05D001724 ORTHO05D007284 2.6e-14 82.8 146 34.9
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 3.9e-10 68.9 126 31.7
PRCOL_00005632 Prasinoderma coloniale HOM05D001724 ORTHO05D007284 6.3e-08 61.6 85 42.4


User provided reference genes

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