Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07928 Brassica carinata HOM05D001670 ORTHO05D002980 1.7e-157 559.3 288 100.0
BolC4t27667H Brassica oleracea HOM05D001670 ORTHO05D002980 1.5e-153 546.2 305 94.1
C04p61850 Brassica napus HOM05D001670 ORTHO05D002980 5.7e-153 544.3 305 93.8
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 5.8e-129 464.5 316 80.4
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 3.7e-128 461.8 316 80.7
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 3.7e-128 461.8 316 80.7
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 1.6e-126 456.4 326 78.2
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 4.6e-126 454.9 322 79.5
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 6.6e-125 451.1 325 77.5
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 9.5e-124 447.2 326 76.7
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 1.2e-123 446.8 327 76.5
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 2.6e-121 439.1 326 74.8
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 3.7e-120 435.3 326 75.2
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 4.9e-120 434.9 326 75.5
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 8.4e-120 434.1 326 75.2
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 2.4e-119 432.6 326 74.8
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 4.1e-119 431.8 326 74.8
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 4.1e-119 431.8 326 74.8
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 1.6e-118 429.9 323 75.2
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 4.6e-118 428.3 326 73.3
A04p24880 Brassica napus HOM05D001670 ORTHO05D002980 4.0e-114 415.2 295 76.9
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 4.0e-114 415.2 327 72.5
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 4.0e-114 415.2 327 72.5
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 1.2e-113 413.7 326 73.3
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 2.2e-112 409.5 326 71.8
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 2.9e-112 409.1 327 71.6
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 2.9e-112 409.1 327 71.6
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.7e-101 373.2 301 69.4
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 8.1e-99 364.4 309 68.9
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 5.7e-84 315.1 323 58.2
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 4.8e-83 312.0 307 59.0
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 4.8e-83 312.0 307 59.0
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 6.3e-83 311.6 310 58.7
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.1e-82 310.8 307 59.0
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 1.4e-82 310.5 310 58.1
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 1.8e-82 310.1 314 57.3
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 6.9e-82 308.1 305 59.0
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 6.9e-82 308.1 301 59.5
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 9.0e-82 307.8 303 59.1
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.5e-81 307.0 316 56.3
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 1.5e-81 307.0 301 59.1
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.6e-81 306.2 308 58.8
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 2.6e-81 306.2 312 58.3
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 3.4e-81 305.8 325 56.6
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 3.4e-81 305.8 325 56.6
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 4.5e-81 305.4 301 58.5
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 7.6e-81 304.7 310 55.8
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 1.0e-80 304.3 304 57.9
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 1.3e-80 303.9 297 57.6
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 1.7e-80 303.5 316 56.3
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 2.2e-80 303.1 309 57.0
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 3.8e-80 302.4 309 57.6
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 5.0e-80 302.0 317 54.6
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 6.5e-80 301.6 307 57.3
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 6.5e-80 301.6 323 55.7
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 1.4e-79 300.4 309 57.0
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 9.3e-79 297.7 286 60.1
BcaB06g28670 Brassica carinata HOM05D001670 ORTHO05D002980 2.1e-78 296.6 178 87.6
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 3.6e-78 295.8 317 54.3
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 4.6e-78 295.4 309 56.3
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 7.9e-78 294.7 315 54.3
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 1.0e-77 294.3 296 57.8
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 1.3e-77 293.9 311 55.9
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 1.8e-77 293.5 309 55.0
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 3.9e-77 292.4 311 55.3
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 6.7e-77 291.6 305 57.0
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 1.9e-76 290.0 303 58.1
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.9e-76 290.0 292 58.6
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 5.7e-76 288.5 312 53.8
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 5.7e-76 288.5 304 56.6
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 1.3e-75 287.3 307 54.7
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 2.8e-75 286.2 290 56.2
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 3.7e-75 285.8 312 53.5
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 6.3e-75 285.0 311 55.3
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 8.2e-75 284.6 298 56.0
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 1.1e-74 284.3 302 57.0
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-74 283.9 306 57.8
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 1.8e-74 283.5 303 55.8
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 1.8e-74 283.5 309 57.3
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 4.1e-74 282.3 309 57.3
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.1e-74 282.3 309 57.3
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.1e-74 282.3 309 57.3
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.1e-74 282.3 309 57.3
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.1e-74 282.3 309 57.3
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.1e-74 282.3 309 57.3
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 4.1e-74 282.3 291 56.0
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 4.1e-74 282.3 298 55.7
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.5e-73 280.4 293 58.7
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.5e-73 280.4 293 58.7
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 2.0e-73 280.0 304 56.2
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.6e-73 279.6 298 52.7
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 2.6e-73 279.6 291 55.3
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 2.6e-73 279.6 307 53.7
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 2.6e-73 279.6 298 54.7
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 3.4e-73 279.3 327 52.6
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 4.5e-73 278.9 310 53.9
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 5.9e-73 278.5 292 56.8
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 7.7e-73 278.1 308 53.9
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 2.9e-72 276.2 312 54.2
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 2.9e-72 276.2 305 52.1
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 6.5e-72 275.0 294 54.1
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 2.5e-71 273.1 321 49.8
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.7e-70 269.6 315 49.8
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 2.7e-70 269.6 257 58.0
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 2.7e-70 269.6 297 53.5
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 3.6e-70 269.2 299 55.5
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 4.6e-70 268.9 282 55.0
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 1.0e-69 267.7 257 57.6
Hma1.2p1_0341F.1_g130250 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 1.4e-69 267.3 298 51.7
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 3.0e-69 266.2 298 52.7
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 3.0e-69 266.2 298 54.7
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 3.0e-69 266.2 320 52.5
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 3.9e-69 265.8 291 55.0
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 2.0e-68 263.5 287 55.7
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 2.0e-68 263.5 270 57.4
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 4.4e-68 262.3 278 54.7
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 7.4e-68 261.5 284 53.2
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 9.7e-68 261.2 284 53.5
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 3.7e-67 259.2 305 52.1
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 8.2e-67 258.1 283 52.7
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 2.6e-65 253.1 299 51.5
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 3.4e-65 252.7 287 50.5
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 4.5e-65 252.3 305 52.5
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 2.9e-64 249.6 265 52.5
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 6.5e-64 248.4 298 49.3
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 2.7e-62 243.0 300 51.0
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 4.7e-62 242.3 295 48.5
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 6.7e-61 238.4 303 47.9
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 6.7e-61 238.4 226 58.0
SHI13578 Sapria himalayana HOM05D001670 ORTHO05D002980 3.7e-59 232.6 307 45.9
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 1.8e-58 230.3 302 46.7
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 1.8e-58 230.3 296 47.6
CSS0045045 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 7.7e-57 224.9 287 49.8
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 3.6e-54 216.1 320 42.8
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.7e-54 215.7 263 49.8
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 1.5e-52 210.7 270 43.3
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 2.6e-52 209.9 243 51.0
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 2.6e-52 209.9 211 59.2
Haze_02722 Corylus avellana HOM05D001670 ORTHO05D002980 5.7e-52 208.8 183 66.1
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 7.5e-52 208.4 282 44.3
CARHR248060 Cardamine hirsuta HOM05D001670 ORTHO05D002980 9.7e-52 208.0 169 67.5
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 1.7e-51 207.2 210 54.8
Glyma.03G118200 Glycine max HOM05D001670 ORTHO05D002980 1.6e-49 200.7 224 52.2
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 7.7e-49 198.4 294 41.5
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 2.9e-48 196.4 227 48.0
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 3.8e-48 196.1 211 53.6
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 3.8e-48 196.1 293 41.6
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 8.5e-48 194.9 215 49.3
Thecc.03G154200 Theobroma cacao HOM05D001670 ORTHO05D002980 1.5e-47 194.1 288 45.5
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 1.6e-46 190.7 283 41.3
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 8.0e-46 188.3 295 40.3
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 1.0e-45 188.0 185 59.5
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 1.4e-45 187.6 239 50.2
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 1.8e-42 177.2 208 49.0
PRCOL_00002164 Prasinoderma coloniale HOM05D001670 ORTHO05D002980 5.5e-39 165.6 240 41.2
Zm00001eb177620 Zea mays HOM05D001670 ORTHO05D002980 2.0e-36 157.1 216 41.7
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 3.7e-35 152.9 185 47.0
Cpa.g.sc212.1 Carica papaya HOM05D001670 ORTHO05D002980 2.4e-34 150.2 148 57.4
MCO11G155 Micromonas commoda HOM05D001670 ORTHO05D002980 2.4e-34 150.2 193 45.1
Cre14.g632950 Chlamydomonas reinhardtii HOM05D001670 ORTHO05D002980 4.5e-33 146.0 217 40.6
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.1e-31 141.4 180 47.2
ECA234G2815 Erigeron canadensis HOM05D001670 ORTHO05D002980 2.5e-31 140.2 211 43.6
Aqoxy1G02768 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 3.2e-26 123.2 121 56.2
Zm00001eb235140 Zea mays HOM05D001670 ORTHO05D002980 1.2e-25 121.3 168 42.3
Zm00001eb382550 Zea mays HOM05D001670 ORTHO05D002980 2.0e-25 120.6 122 47.5
Os03g0102333 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 5.9e-25 119.0 134 41.8
Cfa026075 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.5e-23 114.4 179 40.8
HanXRQChr16g0519701 Helianthus annuus HOM05D001670 ORTHO05D002980 4.3e-23 112.8 115 51.3
Actinidia00125 Actinidia chinensis HOM05D001670 ORTHO05D002980 5.6e-23 112.5 80 71.2
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 2.8e-22 110.2 134 53.0
Actinidia20646 Actinidia chinensis HOM05D001670 ORTHO05D010670 1.8e-21 107.5 200 40.5
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 3.1e-21 106.7 140 45.7
Actinidia20643 Actinidia chinensis HOM05D001670 ORTHO05D010670 1.7e-16 90.9 183 39.3
Actinidia12670 Actinidia chinensis HOM05D001670 ORTHO05D002980 7.3e-15 85.5 87 54.0
Zm00001eb308110 Zea mays HOM05D001670 ORTHO05D002980 8.9e-13 78.6 64 56.2
Zm00001eb208300 Zea mays HOM05D001670 ORTHO05D002980 2.6e-12 77.0 64 54.7
Actinidia00127 Actinidia chinensis HOM05D001670 ORTHO05D002980 3.4e-12 76.6 123 43.1
AagrBONN_evm.TU.Sc2ySwM_362.1757 Anthoceros agrestis HOM05D001670 ORTHO05D002980 3.4e-12 76.6 227 30.8
Zm00001eb134440 Zea mays HOM05D001670 ORTHO05D002980 3.4e-12 76.6 64 54.7
Actinidia20644 Actinidia chinensis HOM05D001670 ORTHO05D015800 2.4e-10 70.5 46 78.3
MD07G1112600 Malus domestica HOM05D001670 ORTHO05D002980 4.1e-10 69.7 81 51.9
Actinidia00124 Actinidia chinensis HOM05D001670 ORTHO05D010670 1.2e-09 68.2 100 44.0
Rhsim03G0123200 Rhododendron simsii HOM05D001670 ORTHO05D002980 2.7e-09 67.0 133 34.6
Haze_02721 Corylus avellana HOM05D001670 ORTHO05D002980 1.0e-08 65.1 63 50.8
Lj7C538T12 Lonicera japonica HOM05D001670 ORTHO05D002980 7.3e-07 58.9 63 54.0
Actinidia20090 Actinidia chinensis HOM05D001670 ORTHO05D002980 9.5e-07 58.5 48 62.5


User provided reference genes

Program Settings