Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07445 Brassica carinata HOM05D003704 ORTHO05D005892 0.0e+00 2022.3 1004 100.0
BolC4t28191H Brassica oleracea HOM05D003704 ORTHO05D005892 0.0e+00 1995.3 992 100.0
C04p66890 Brassica napus HOM05D003704 ORTHO05D005892 0.0e+00 1979.9 992 99.3
BcaB02g09152 Brassica carinata HOM05D003704 ORTHO05D005892 0.0e+00 1893.6 1008 93.8
Sp4g21160 Schrenkiella parvula HOM05D003704 ORTHO05D005892 0.0e+00 1892.1 1008 93.8
BraA05t19706Z Brassica rapa HOM05D003704 ORTHO05D005892 0.0e+00 1883.2 1003 93.9
A05p07400 Brassica napus HOM05D003704 ORTHO05D005892 0.0e+00 1881.3 1003 93.8
Thhalv10016138m.g Eutrema salsugineum HOM05D003704 ORTHO05D005892 0.0e+00 1880.1 1008 93.1
C04p08870 Brassica napus HOM05D003704 ORTHO05D005892 0.0e+00 1879.4 1002 93.7
BolC4t22475H Brassica oleracea HOM05D003704 ORTHO05D005892 0.0e+00 1875.5 1002 93.6
AT2G38770 Arabidopsis thaliana HOM05D003704 ORTHO05D005892 0.0e+00 1865.9 1008 92.4
AL4G36070 Arabidopsis lyrata HOM05D003704 ORTHO05D005892 0.0e+00 1864.7 1008 92.2
Carub.0004s2079 Capsella rubella HOM05D003704 ORTHO05D005892 0.0e+00 1858.2 1008 92.2
CARHR133480 Cardamine hirsuta HOM05D003704 ORTHO05D005892 0.0e+00 1848.2 1009 91.3
Aa31LG5G20910 Aethionema arabicum HOM05D003704 ORTHO05D005892 0.0e+00 1837.4 1008 90.4
BcaNung07214 Brassica carinata HOM05D003704 ORTHO05D005892 0.0e+00 1758.8 905 96.0
THA.LOC104801743 Tarenaya hassleriana HOM05D003704 ORTHO05D005892 0.0e+00 1750.3 1009 85.3
Manes.04G164800 Manihot esculenta HOM05D003704 ORTHO05D005892 0.0e+00 1622.8 1018 79.2
Cfa010865 Carpinus fangiana HOM05D003704 ORTHO05D005892 0.0e+00 1622.1 1015 79.5
QL04p013824 Quercus lobata HOM05D003704 ORTHO05D005892 0.0e+00 1619.0 1024 78.8
CiPaw.13G011100 Carya illinoinensis HOM05D003704 ORTHO05D005892 0.0e+00 1615.9 1014 78.5
CANSAT64G2305 Cannabis sativa HOM05D003704 ORTHO05D005892 0.0e+00 1614.7 1015 79.1
TWI15G0657 Tripterygium wilfordii HOM05D003704 ORTHO05D005892 0.0e+00 1611.7 1011 79.4
Atru.chr11.2463 Acer truncatum HOM05D003704 ORTHO05D005892 0.0e+00 1606.3 1014 78.9
Ciclev10030496m.g Citrus clementina HOM05D003704 ORTHO05D005892 0.0e+00 1605.5 1015 78.8
Haze_03082 Corylus avellana HOM05D003704 ORTHO05D005892 0.0e+00 1605.5 1036 77.7
Eucgr.G03254 Eucalyptus grandis HOM05D003704 ORTHO05D005892 0.0e+00 1604.7 1028 77.6
Atru.chr11.2491 Acer truncatum HOM05D003704 ORTHO05D005892 0.0e+00 1604.3 1014 78.8
Thecc.05G198600 Theobroma cacao HOM05D003704 ORTHO05D005892 0.0e+00 1602.4 1018 78.6
PGR142G1874 Punica granatum HOM05D003704 ORTHO05D005892 0.0e+00 1597.8 1020 77.5
Gorai.004G262000 Gossypium raimondii HOM05D003704 ORTHO05D005892 0.0e+00 1591.2 1018 77.6
ClCG05G020780 Citrullus lanatus HOM05D003704 ORTHO05D005892 0.0e+00 1590.9 1017 77.5
Duzib128G1318 Durio zibethinus HOM05D003704 ORTHO05D005892 0.0e+00 1588.2 1018 77.7
MELO3C012449.2 Cucumis melo HOM05D003704 ORTHO05D005892 0.0e+00 1587.0 1017 77.5
Prupe.2G030100 Prunus persica HOM05D003704 ORTHO05D005892 0.0e+00 1584.7 1017 76.8
CsaV3_5G036520 Cucumis sativus L. HOM05D003704 ORTHO05D005892 0.0e+00 1581.6 1017 77.2
MD07G1033300 Malus domestica HOM05D003704 ORTHO05D005892 0.0e+00 1580.8 1009 77.7
Sed0025295 Sechium edule HOM05D003704 ORTHO05D005892 0.0e+00 1579.7 1018 77.7
CSS0035088 Camellia sinensis var. sinensis HOM05D003704 ORTHO05D005892 0.0e+00 1578.5 1014 77.9
Hund15714 Selenicereus undatus HOM05D003704 ORTHO05D005892 0.0e+00 1577.8 1034 76.6
Dinv32045 Davidia involucrata HOM05D003704 ORTHO05D005892 0.0e+00 1576.6 1018 77.7
Lalb_Chr17g0337761 Lupinus albus HOM05D003704 ORTHO05D005892 0.0e+00 1570.1 1018 76.7
Nitab4.5_0000316g0110 Nicotiana tabacum HOM05D003704 ORTHO05D005892 0.0e+00 1569.3 1027 75.9
TAR628G1325 Trochodendron aralioides HOM05D003704 ORTHO05D005892 0.0e+00 1568.9 1015 77.4
CAN.G1571.5 Capsicum annuum HOM05D003704 ORTHO05D005892 0.0e+00 1567.4 1012 76.3
Potri.003G201200 Populus trichocarpa HOM05D003704 ORTHO05D005892 0.0e+00 1563.9 1024 75.7
Actinidia21525 Actinidia chinensis HOM05D003704 ORTHO05D005892 0.0e+00 1563.5 1011 76.7
AUR62026830 Chenopodium quinoa HOM05D003704 ORTHO05D005892 0.0e+00 1563.5 1018 76.7
HanXRQChr17g0564051 Helianthus annuus HOM05D003704 ORTHO05D005892 0.0e+00 1562.7 1020 76.2
Rhsim01G0123500 Rhododendron simsii HOM05D003704 ORTHO05D005892 0.0e+00 1561.6 1014 76.7
Sopen01g030440 Solanum pennellii HOM05D003704 ORTHO05D005892 0.0e+00 1560.8 1025 75.4
AUR62037223 Chenopodium quinoa HOM05D003704 ORTHO05D005892 0.0e+00 1560.0 1018 76.5
EL10Ac2g02849 Beta vulgaris HOM05D003704 ORTHO05D005892 0.0e+00 1558.1 1018 76.1
ECA234G1951 Erigeron canadensis HOM05D003704 ORTHO05D005892 0.0e+00 1558.1 1019 76.4
Solyc01g068480.4 Solanum lycopersicum HOM05D003704 ORTHO05D005892 0.0e+00 1557.0 1025 75.3
MBI05_g32455_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 0.0e+00 1555.4 1019 76.5
Nitab4.5_0001888g0060 Nicotiana tabacum HOM05D003704 ORTHO05D005892 0.0e+00 1554.3 1027 75.5
VMungo0251G0473 Vigna mungo HOM05D003704 ORTHO05D005892 0.0e+00 1553.9 1021 75.9
Sc11g0006670 Simmondsia chinensis HOM05D003704 ORTHO05D005892 0.0e+00 1553.1 1021 75.6
Glyma.20G000700 Glycine max HOM05D003704 ORTHO05D005892 0.0e+00 1551.6 1020 76.5
Sabra03G0148800 Salix brachista HOM05D003704 ORTHO05D005892 0.0e+00 1550.8 1024 75.0
Ca_12375_v3 Cicer arietinum L. HOM05D003704 ORTHO05D005892 0.0e+00 1549.6 1014 75.7
Phvul.003G001700 Phaseolus vulgaris HOM05D003704 ORTHO05D005892 0.0e+00 1547.3 1020 76.2
Cc02_g29160 Coffea canephora HOM05D003704 ORTHO05D005892 0.0e+00 1546.9 1023 75.3
Lj2A1006G35 Lonicera japonica HOM05D003704 ORTHO05D005892 0.0e+00 1545.8 1015 75.9
DCAR_003239 Daucus carota HOM05D003704 ORTHO05D005892 0.0e+00 1543.9 998 76.6
vmacro12686 Vaccinium macrocarpon HOM05D003704 ORTHO05D005892 0.0e+00 1543.9 1092 71.3
arahy.Tifrunner.gnm1.ann1.75MG08 Arachis hypogaea HOM05D003704 ORTHO05D005892 0.0e+00 1543.1 1012 76.6
TPR.G35533 Trifolium pratense HOM05D003704 ORTHO05D005892 0.0e+00 1543.1 1003 76.2
Ah.12g065080 Amaranthus hybridus HOM05D003704 ORTHO05D005892 0.0e+00 1541.6 1009 75.6
arahy.Tifrunner.gnm1.ann1.RZB3JM Arachis hypogaea HOM05D003704 ORTHO05D005892 0.0e+00 1541.2 1007 76.9
Glyma.09G285300 Glycine max HOM05D003704 ORTHO05D005892 0.0e+00 1539.2 1019 75.2
Lsat_1_v5_gn_4_29820 Lactuca sativa HOM05D003704 ORTHO05D005892 0.0e+00 1539.2 1020 74.4
PSO541G6018 Papaver somniferum HOM05D003704 ORTHO05D005892 0.0e+00 1537.7 1009 75.4
Aqoxy1G04161 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 0.0e+00 1537.3 1019 75.3
Lj2g0008107 Lotus japonicus HOM05D003704 ORTHO05D005892 0.0e+00 1535.0 1013 75.0
Gohir.A08G225100 Gossypium hirsutum HOM05D003704 ORTHO05D005892 0.0e+00 1534.6 1018 75.7
RcHm_v2.0_Chr1g0319731 Rosa chinensis HOM05D003704 ORTHO05D005892 0.0e+00 1534.6 1020 75.4
Migut.N01826 Erythranthe guttata HOM05D003704 ORTHO05D005892 0.0e+00 1534.2 1014 74.1
FAN01G0955 Fragaria x ananassa HOM05D003704 ORTHO05D005892 0.0e+00 1533.5 1019 74.8
FvH4_7g02390 Fragaria vesca HOM05D003704 ORTHO05D005892 0.0e+00 1532.7 1012 75.2
PSO781G0253 Papaver somniferum HOM05D003704 ORTHO05D005892 0.0e+00 1531.9 1009 75.1
Nn5g29073 Nelumbo nucifera HOM05D003704 ORTHO05D005892 0.0e+00 1528.8 1015 75.6
MSTRG.28042 Avicennia marina HOM05D003704 ORTHO05D005892 0.0e+00 1526.1 1018 74.0
FAN03G0678 Fragaria x ananassa HOM05D003704 ORTHO05D005892 0.0e+00 1526.1 1018 74.9
FAN06G0794 Fragaria x ananassa HOM05D003704 ORTHO05D005892 0.0e+00 1525.0 1012 75.0
Medtr1g038815 Medicago truncatula HOM05D003704 ORTHO05D005892 0.0e+00 1522.3 1020 74.6
SGA_v2.0_scaffold5G02930 Striga asiatica HOM05D003704 ORTHO05D005892 0.0e+00 1507.3 1066 71.2
Peaxi162Scf00309g00333 Petunia axillaris HOM05D003704 ORTHO05D005892 0.0e+00 1496.1 1021 73.3
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 0.0e+00 1496.1 1025 73.0
Zm00001eb018810 Zea mays HOM05D003704 ORTHO05D005892 0.0e+00 1481.8 1015 71.5
ATR0564G498 Amborella trichopoda HOM05D003704 ORTHO05D005892 0.0e+00 1474.5 1022 72.3
Psat6g100680 Pisum sativum HOM05D003704 ORTHO05D005892 0.0e+00 1455.3 1015 72.6
CDE02G2053 Ceratophyllum demersum HOM05D003704 ORTHO05D005892 0.0e+00 1440.6 1013 71.2
Migut.O00529 Erythranthe guttata HOM05D003704 ORTHO05D005892 0.0e+00 1427.5 1016 70.0
Cpa.g.sc2782.1 Carica papaya HOM05D003704 ORTHO05D005892 0.0e+00 1409.0 1015 71.6
FAN10G3548 Fragaria x ananassa HOM05D003704 ORTHO05D005892 0.0e+00 1375.9 941 72.7
Mapoly0170s0020 Marchantia polymorpha HOM05D003704 ORTHO05D005892 0.0e+00 1265.4 1011 63.0
Oeu003918.1 Olea europaea HOM05D003704 ORTHO05D005892 0.0e+00 1252.3 1066 62.5
GSVIVG01000835001 Vitis vinifera HOM05D003704 ORTHO05D005892 0.0e+00 1244.2 1139 60.1
AagrBONN_evm.TU.Sc2ySwM_344.1100 Anthoceros agrestis HOM05D003704 ORTHO05D005892 0.0e+00 1231.5 985 62.0
GSVIVG01029933001 Vitis vinifera HOM05D003704 ORTHO05D005892 0.0e+00 1202.6 1016 63.8
Pp3c21_9820 Physcomitrium patens HOM05D003704 ORTHO05D005892 0.0e+00 1139.4 972 59.2
HPP92_001562 Vanilla planifolia HOM05D003704 ORTHO05D005892 0.0e+00 1131.7 849 68.1
CBR_g49869 Chara braunii HOM05D003704 ORTHO05D005892 0.0e+00 1128.2 1066 55.2
MD02G1293400 Malus domestica HOM05D003704 ORTHO05D005892 0.0e+00 1120.9 730 76.6
SMO230G0016 Selaginella moellendorffii HOM05D003704 ORTHO05D005892 0.0e+00 1104.4 942 59.3
BraA04t18425Z Brassica rapa HOM05D003704 ORTHO05D005892 0.0e+00 1092.4 994 62.5
unitig_21.g20277 Utricularia gibba HOM05D003704 ORTHO05D005892 1.2e-295 1020.0 640 76.9
Cre06.g300750 Chlamydomonas reinhardtii HOM05D003704 ORTHO05D005892 4.0e-270 935.3 1243 43.2
Gohir.D08G245500 Gossypium hirsutum HOM05D003704 ORTHO05D005892 5.8e-269 931.4 531 84.7
SEGI_35696 Sequoiadendron giganteum HOM05D003704 ORTHO05D005892 5.6e-264 914.8 579 76.5
QL07p028220 Quercus lobata HOM05D003704 ORTHO05D005892 2.2e-228 796.6 691 60.9
MCO01G629 Micromonas commoda HOM05D003704 ORTHO05D005892 2.5e-219 766.5 954 44.7
QL01p034778 Quercus lobata HOM05D003704 ORTHO05D005892 1.5e-192 677.6 473 71.5
Gohir.D08G245550 Gossypium hirsutum HOM05D003704 ORTHO05D005892 4.7e-178 629.4 474 67.9
Aqoxy263s004 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 6.6e-172 609.0 364 78.3
PRCOL_00007279 Prasinoderma coloniale HOM05D003704 ORTHO05D005892 6.2e-170 602.4 1059 38.1
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 3.6e-146 523.5 988 33.5
CARHR288720 Cardamine hirsuta HOM05D003704 ORTHO05D005892 1.1e-134 485.3 830 39.3
SEGI_24800 Sequoiadendron giganteum HOM05D003704 ORTHO05D005892 4.3e-131 473.4 443 58.5
Aqoxy263s005 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 2.4e-121 441.0 334 68.0
HanXRQChr14g0439891 Helianthus annuus HOM05D003704 ORTHO05D005892 1.0e-119 435.6 259 80.3
Haze_26754 Corylus avellana HOM05D003704 ORTHO05D005892 2.7e-117 427.6 497 44.3
COL.COLO4_37421 Corchorus olitorius HOM05D003704 ORTHO05D005892 3.6e-117 427.2 325 68.3
MBI05_g32454_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 2.9e-111 407.5 254 79.9
unitig_21.g20278 Utricularia gibba HOM05D003704 ORTHO05D005892 4.7e-109 400.2 335 62.1
MD02G1293500 Malus domestica HOM05D003704 ORTHO05D005892 1.4e-100 372.1 270 68.9
Gorai.010G147800 Gossypium raimondii HOM05D003704 ORTHO05D005892 3.2e-65 254.6 226 61.1
PSO781G0329 Papaver somniferum HOM05D003704 ORTHO05D005892 8.6e-63 246.5 221 60.6
Aqoxy263s003 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 2.5e-62 245.0 123 97.6
SGA_v2.0_scaffold354G49736 Striga asiatica HOM05D003704 ORTHO05D005892 4.1e-57 227.6 434 35.5
Glyma.03G048701 Glycine max HOM05D003704 ORTHO05D005892 2.4e-52 211.8 149 65.8
Glyma.U033305 Glycine max HOM05D003704 ORTHO05D005892 2.4e-52 211.8 149 65.8
Psat4g010680 Pisum sativum HOM05D003704 ORTHO05D005892 2.4e-52 211.8 168 64.3
HPP92_001561 Vanilla planifolia HOM05D003704 ORTHO05D005892 1.4e-49 202.6 165 63.6
BcaB06g28494 Brassica carinata HOM05D003704 ORTHO05D040007 2.4e-41 175.3 93 93.5
C04p60420 Brassica napus HOM05D003704 ORTHO05D040007 5.4e-41 174.1 93 92.5
Zm00001eb387580 Zea mays HOM05D000068 ORTHO05D013931 1.6e-40 172.6 216 43.5
RcHm_v2.0_Chr1g0320051 Rosa chinensis HOM05D003704 ORTHO05D005892 1.2e-35 156.4 143 60.8
Lalb_Chr10g0094791 Lupinus albus HOM05D003704 ORTHO05D028681 2.6e-35 155.2 88 83.0
RcHm_v2.0_Chr1g0320421 Rosa chinensis HOM05D003704 ORTHO05D017707 1.3e-26 126.3 93 68.8
ATR0564G340 Amborella trichopoda HOM05D003704 ORTHO05D005892 1.9e-25 122.5 74 83.8
Psat5g110280 Pisum sativum HOM05D003704 ORTHO05D005892 9.3e-25 120.2 68 77.9
Zm00001eb006600 Zea mays HOM05D003404 ORTHO05D004052 1.6e-24 119.4 105 52.4
RcHm_v2.0_Chr1g0320981 Rosa chinensis HOM05D003704 ORTHO05D017707 3.3e-22 111.7 75 76.0
Cpa.g.c47396 Carica papaya HOM05D003704 ORTHO05D005892 1.1e-20 106.7 72 68.1
Zm00001eb178910 Zea mays HOM05D003404 ORTHO05D004052 2.2e-18 99.0 134 41.8
Sabra16G0112400 Salix brachista HOM05D003704 ORTHO05D017707 4.6e-16 91.3 55 80.0
Sabra18G0029400 Salix brachista HOM05D000117 ORTHO05D017707 4.6e-16 91.3 55 80.0
Sabra11G0114600 Salix brachista HOM05D003704 ORTHO05D017707 8.7e-15 87.0 48 85.4
Sabra17G0036200 Salix brachista HOM05D003704 ORTHO05D017707 8.7e-15 87.0 48 85.4
Sabra16G0122800 Salix brachista HOM05D003704 ORTHO05D017707 3.3e-14 85.1 47 85.1
Sabra16G0231600 Salix brachista HOM05D001895 ORTHO05D002082 3.3e-14 85.1 48 83.3
QL01p034783 Quercus lobata HOM05D003704 ORTHO05D005892 8.2e-13 80.5 45 80.0
BolC4t27541H Brassica oleracea HOM05D003704 ORTHO05D017707 7.6e-11 73.9 48 81.2
Os03g0387000 Oryza sativa ssp. japonica HOM05D003704 ORTHO05D005892 1.7e-10 72.8 42 81.0
SMO230G0104 Selaginella moellendorffii HOM05D003704 ORTHO05D013439 2.1e-08 65.9 91 39.6
RcHm_v2.0_Chr1g0320091 Rosa chinensis HOM05D003704 ORTHO05D017707 4.6e-08 64.7 69 52.2
RcHm_v2.0_Chr1g0320881 Rosa chinensis HOM05D003704 ORTHO05D028681 5.1e-07 61.2 50 60.0


User provided reference genes

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