Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 2.9e-135 485.3 260 100.0
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 9.3e-94 347.4 215 91.2
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 9.3e-94 347.4 215 91.2
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 1.9e-91 339.7 391 57.0
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 1.9e-91 339.7 391 57.0
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 4.0e-89 332.0 391 55.8
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 5.3e-89 331.6 391 56.5
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 1.4e-86 323.6 389 55.0
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 3.2e-86 322.4 392 54.8
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 4.3e-83 312.0 366 56.0
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 4.3e-83 312.0 391 54.2
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 4.3e-83 312.0 391 54.2
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 4.8e-82 308.5 391 54.0
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 8.2e-82 307.8 391 52.9
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 1.4e-81 307.0 391 53.7
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 1.4e-81 307.0 391 53.7
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 1.2e-80 303.9 391 52.9
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 1.0e-79 300.8 387 52.5
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 9.7e-75 284.3 289 56.4
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 9.7e-75 284.3 387 48.1
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 1.3e-74 283.9 386 48.2
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 1.4e-73 280.4 390 45.1
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 1.8e-73 280.0 386 47.2
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 5.3e-73 278.5 389 48.1
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 2.6e-72 276.2 410 45.9
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 1.1e-70 270.8 386 47.7
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 1.4e-70 270.4 409 43.0
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 4.2e-70 268.9 329 49.5
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 5.5e-70 268.5 389 46.3
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.2e-69 267.3 301 51.8
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 3.6e-69 265.8 386 44.8
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 7.9e-69 264.6 390 43.3
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 1.8e-68 263.5 391 45.5
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 1.8e-68 263.5 393 46.1
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 1.8e-68 263.5 329 48.0
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.8e-68 263.5 329 48.0
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 3.0e-68 262.7 397 45.1
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 3.9e-68 262.3 389 45.5
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 5.1e-68 261.9 432 41.0
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 5.1e-68 261.9 408 44.4
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 6.7e-68 261.5 388 45.1
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 6.7e-68 261.5 329 47.7
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 6.7e-68 261.5 386 44.8
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 8.7e-68 261.2 329 47.7
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 8.7e-68 261.2 329 47.7
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 1.1e-67 260.8 393 46.3
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 1.1e-67 260.8 328 48.2
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 1.5e-67 260.4 390 46.2
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 1.9e-67 260.0 389 46.3
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 2.5e-67 259.6 395 44.3
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 3.3e-67 259.2 335 46.9
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 4.3e-67 258.8 408 42.6
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 4.3e-67 258.8 201 67.2
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 5.7e-67 258.5 391 45.8
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 5.7e-67 258.5 201 66.7
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 5.7e-67 258.5 201 66.7
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 7.4e-67 258.1 329 47.1
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 9.7e-67 257.7 202 65.8
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 1.3e-66 257.3 381 43.8
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 1.3e-66 257.3 387 45.7
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 1.7e-66 256.9 200 66.5
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 1.7e-66 256.9 393 45.8
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 1.7e-66 256.9 398 45.5
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 2.2e-66 256.5 399 44.4
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 2.2e-66 256.5 329 47.4
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 2.2e-66 256.5 202 65.8
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 2.2e-66 256.5 410 42.0
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 2.2e-66 256.5 202 66.3
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.8e-66 256.1 328 47.3
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 2.8e-66 256.1 202 66.3
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 6.3e-66 255.0 391 45.8
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 8.2e-66 254.6 202 65.3
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 1.1e-65 254.2 392 44.6
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.1e-65 254.2 388 45.4
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 1.4e-65 253.8 202 65.3
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 1.4e-65 253.8 202 65.3
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 1.4e-65 253.8 388 45.4
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 1.8e-65 253.4 329 46.2
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 2.4e-65 253.1 198 65.2
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 2.4e-65 253.1 328 47.9
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 2.4e-65 253.1 384 45.8
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 2.4e-65 253.1 396 43.9
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 3.1e-65 252.7 202 65.3
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 3.1e-65 252.7 324 46.0
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 3.1e-65 252.7 328 46.6
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 4.1e-65 252.3 404 42.1
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 4.1e-65 252.3 206 64.1
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 4.1e-65 252.3 202 65.3
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 1.2e-64 250.8 202 65.3
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 1.2e-64 250.8 328 46.3
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 1.5e-64 250.4 390 45.6
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 1.5e-64 250.4 202 63.4
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 2.0e-64 250.0 353 45.0
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 2.0e-64 250.0 394 44.7
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 2.6e-64 249.6 329 45.9
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 3.4e-64 249.2 201 65.2
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 4.5e-64 248.8 392 44.9
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 4.5e-64 248.8 202 64.9
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 5.9e-64 248.4 202 64.4
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 5.9e-64 248.4 388 42.5
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 2.2e-63 246.5 201 64.2
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 5.0e-63 245.4 201 64.7
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.1e-62 244.2 214 60.7
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 2.5e-62 243.0 201 63.7
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 2.5e-62 243.0 201 63.7
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 4.2e-62 242.3 443 41.5
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 4.2e-62 242.3 388 44.1
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 4.4e-59 232.3 206 58.7
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 1.3e-58 230.7 365 43.8
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 1.7e-58 230.3 202 59.4
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 2.0e-56 223.4 209 56.5
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 1.1e-54 217.6 222 55.4
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 2.7e-53 213.0 206 54.4
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.3e-47 194.1 325 44.3
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 1.5e-46 190.7 280 43.6
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 5.5e-46 188.7 376 39.9
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 2.7e-45 186.4 301 41.2
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 4.0e-44 182.6 157 61.1
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 2.6e-43 179.9 168 57.1
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 5.7e-43 178.7 157 60.5
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 4.8e-42 175.6 168 58.9
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 5.2e-36 155.6 100 76.0
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 5.2e-36 155.6 100 76.0
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 5.2e-36 155.6 125 66.4
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 1.2e-32 144.4 248 42.3
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 1.9e-30 137.1 171 48.5
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 2.8e-29 133.3 200 39.0
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 4.4e-19 99.4 98 60.2
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 7.0e-17 92.0 203 32.5
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 5.6e-14 82.4 55 74.5
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 3.6e-13 79.7 45 84.4
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 6.2e-13 79.0 45 84.4
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 4.0e-12 76.3 45 80.0
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-12 76.3 47 74.5
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 8.9e-12 75.1 204 29.9
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 4.9e-10 69.3 209 28.2
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 8.3e-10 68.6 40 67.5
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 1.1e-09 68.2 74 52.7
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 3.9e-07 59.7 45 57.8
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 7.3e-06 55.5 45 68.9


User provided reference genes

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