Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 1.2e-141 506.5 252 100.0
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 1.7e-132 476.1 252 94.8
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 9.5e-128 460.3 252 92.9
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 2.2e-124 449.1 252 88.9
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 3.3e-120 435.3 277 80.9
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 7.7e-77 291.2 318 55.7
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 1.8e-73 280.0 308 53.9
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 1.8e-73 280.0 314 55.1
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 3.3e-72 275.8 310 55.5
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 7.4e-72 274.6 314 54.8
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 2.2e-71 273.1 310 54.8
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 1.1e-70 270.8 310 55.2
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 1.4e-70 270.4 327 50.8
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 7.7e-69 264.6 309 51.8
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 7.7e-69 264.6 314 52.5
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 1.3e-68 263.8 215 64.7
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 2.9e-68 262.7 309 51.5
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 1.7e-47 193.7 190 56.8
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 4.4e-32 142.5 235 38.7
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 2.2e-31 140.2 233 38.2
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.8e-31 139.8 219 38.8
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.1e-30 137.9 201 39.8
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.6e-29 134.0 235 37.0
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 3.5e-29 132.9 240 38.3
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 3.9e-28 129.4 251 34.7
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.1e-27 127.9 266 35.7
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 1.1e-27 127.9 280 32.9
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.5e-27 126.7 251 34.7
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 4.7e-26 122.5 229 38.0
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 6.1e-26 122.1 216 39.4
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.4e-25 120.9 235 33.2
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 2.3e-25 120.2 230 35.2
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 4.0e-25 119.4 273 31.9
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 6.8e-25 118.6 206 34.0
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.5e-24 117.5 238 32.8
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 3.4e-24 116.3 297 32.0
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 4.4e-24 115.9 297 31.3
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.3e-23 114.4 277 32.5
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 3.7e-23 112.8 239 31.4
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 6.4e-23 112.1 244 33.2
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 6.4e-23 112.1 240 33.8
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.4e-23 112.1 277 31.8
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 1.1e-22 111.3 248 31.5
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.1e-22 111.3 218 35.3
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 2.4e-22 110.2 240 34.2
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 9.2e-22 108.2 237 32.1
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 2.0e-21 107.1 242 31.4
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 3.5e-21 106.3 235 32.3
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 4.6e-21 105.9 203 33.5
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.3e-20 103.6 216 32.4
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 3.0e-20 103.2 302 27.8
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 3.9e-20 102.8 235 32.8
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.1e-19 101.3 248 31.5
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.1e-19 101.3 249 32.5
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.3e-19 99.4 248 30.2
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 5.6e-19 99.0 275 27.3
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 5.6e-19 99.0 231 34.2
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.2e-18 97.8 300 27.0
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.6e-18 97.4 123 43.1
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 2.8e-18 96.7 169 38.5
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 4.7e-18 95.9 239 33.1
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 6.2e-18 95.5 146 39.7
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 6.2e-18 95.5 121 44.6
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 1.8e-17 94.0 133 40.6
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 4.0e-17 92.8 253 26.5
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 4.0e-17 92.8 244 29.5
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 5.2e-17 92.4 143 37.8
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 8.9e-17 91.7 353 23.8
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 2.6e-16 90.1 261 26.1
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 5.8e-16 89.0 205 33.2
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 3.7e-15 86.3 165 35.8
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 1.1e-14 84.7 213 33.8
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 4.1e-14 82.8 216 31.5
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 5.4e-14 82.4 146 35.6
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 1.2e-13 81.3 247 29.6
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 1.2e-13 81.3 127 36.2
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.6e-13 80.9 325 25.2
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 1.6e-13 80.9 158 31.6
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 4.6e-13 79.3 216 31.0
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.3e-12 77.8 312 25.0
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 1.7e-12 77.4 188 29.3
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.3e-12 77.0 188 29.3
BcaB05g22585 Brassica carinata HOM05D006496 ORTHO05D008390 3.0e-12 76.6 163 35.0
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 3.0e-12 76.6 53 71.7
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 3.0e-12 76.6 53 71.7
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 3.0e-12 76.6 53 71.7
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 8.6e-12 75.1 201 29.4
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.5e-11 73.6 205 29.8
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 3.3e-11 73.2 139 35.3
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 7.3e-11 72.0 272 25.7
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 9.5e-11 71.6 211 27.5
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 2.8e-10 70.1 213 30.0
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 4.7e-10 69.3 197 26.4
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 6.2e-10 68.9 140 30.0
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 6.2e-10 68.9 181 33.1
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 5.2e-09 65.9 163 27.6
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.5e-08 64.3 185 29.7
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 2.6e-08 63.5 124 32.3
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 3.4e-08 63.2 211 28.4
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 5.8e-08 62.4 110 35.5
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 7.6e-08 62.0 141 31.2
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.6e-08 62.0 211 28.4
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 9.9e-08 61.6 139 34.5
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.3e-07 61.2 46 58.7
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 1.3e-07 61.2 130 33.1
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 1.7e-07 60.8 142 32.4
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.7e-07 60.8 139 30.2
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 1.7e-07 60.8 136 29.4
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.7e-07 60.8 128 32.8
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 1.7e-07 60.8 134 32.1
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 2.2e-07 60.5 139 30.9
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 2.2e-07 60.5 139 30.9
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 2.2e-07 60.5 146 31.5
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.2e-07 60.5 49 55.1
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 3.7e-07 59.7 132 30.3
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 3.7e-07 59.7 69 47.8
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.7e-07 59.7 136 27.2
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.7e-07 59.7 162 26.5
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 4.9e-07 59.3 164 29.9
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 4.9e-07 59.3 146 31.5
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 4.9e-07 59.3 140 27.9
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 4.9e-07 59.3 67 47.8
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 6.4e-07 58.9 154 26.6
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 1.1e-06 58.2 140 30.7
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.1e-06 58.2 79 45.6
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.1e-06 58.2 194 28.4
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 1.1e-06 58.2 118 35.6
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 1.4e-06 57.8 195 30.3
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.4e-06 57.8 62 51.6
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 1.9e-06 57.4 132 32.6
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 1.9e-06 57.4 141 30.5
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 1.9e-06 57.4 135 30.4
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.9e-06 57.4 197 26.4
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.9e-06 57.4 140 27.1
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.4e-06 57.0 130 30.0
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 2.4e-06 57.0 140 32.9
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.2e-06 56.6 136 28.7
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 3.2e-06 56.6 50 56.0
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 4.1e-06 56.2 135 29.6
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 4.1e-06 56.2 140 30.7
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 5.4e-06 55.8 136 30.9
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 7.1e-06 55.5 110 35.5
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 7.1e-06 55.5 119 37.0


User provided reference genes

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