Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1150.6 578 100.0
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1092.4 682 84.0
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1092.4 682 84.0
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1092.4 682 84.0
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1077.4 682 83.1
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1077.4 682 83.1
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 8.7e-310 1066.2 682 81.8
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 5.3e-307 1057.0 682 81.4
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 1.5e-301 1038.9 682 79.6
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 1.8e-299 1031.9 694 79.7
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 1.1e-296 1022.7 682 78.7
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.4e-296 1022.3 682 78.9
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 1.3e-294 1015.8 682 78.3
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 4.4e-277 957.6 685 73.4
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 1.8e-275 952.2 686 72.9
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 2.8e-239 832.0 686 65.0
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 1.4e-238 829.7 684 64.8
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 5.2e-238 827.8 686 65.0
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 6.8e-238 827.4 682 67.3
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 6.8e-238 827.4 686 64.7
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 7.8e-234 813.9 685 63.8
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 9.5e-232 807.0 703 62.0
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 8.1e-231 803.9 699 62.5
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 1.1e-230 803.5 684 63.2
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 4.0e-230 801.6 675 63.7
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 1.5e-229 799.7 679 62.9
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 2.6e-229 798.9 675 63.9
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 5.8e-229 797.7 686 62.5
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 7.5e-229 797.3 685 62.8
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 1.3e-228 796.6 686 62.2
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.7e-228 796.2 689 62.1
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 1.7e-228 796.2 683 62.8
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 2.2e-228 795.8 676 63.2
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 8.3e-228 793.9 686 62.2
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 8.3e-228 793.9 686 62.4
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 1.1e-227 793.5 685 62.6
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 1.4e-227 793.1 685 63.4
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 1.9e-227 792.7 685 62.6
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 2.4e-227 792.3 687 62.7
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 2.4e-227 792.3 685 62.2
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 5.4e-227 791.2 675 62.8
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 9.2e-227 790.4 687 62.6
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 2.7e-226 788.9 683 62.8
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 3.5e-226 788.5 685 62.8
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 7.8e-226 787.3 737 58.9
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 1.3e-225 786.6 685 62.6
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 1.3e-225 786.6 685 62.6
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 3.9e-225 785.0 689 62.7
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 5.1e-225 784.6 685 61.0
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 8.6e-225 783.9 683 62.4
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 1.5e-224 783.1 685 61.3
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 1.5e-224 783.1 685 60.7
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 1.5e-224 783.1 683 62.4
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 1.9e-224 782.7 685 62.3
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 1.9e-224 782.7 685 62.0
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.9e-224 782.7 686 62.4
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 7.3e-224 780.8 685 61.8
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 9.5e-224 780.4 685 60.3
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 1.2e-223 780.0 683 61.9
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 1.6e-223 779.6 686 61.7
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 2.1e-223 779.2 749 57.8
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 6.2e-223 777.7 685 62.3
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 8.1e-223 777.3 683 61.2
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 1.4e-222 776.5 685 61.9
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 2.3e-222 775.8 707 58.8
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 6.8e-222 774.2 732 58.9
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 8.9e-222 773.9 692 60.4
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 8.9e-222 773.9 692 60.4
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 8.9e-222 773.9 685 61.8
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 2.0e-221 772.7 692 60.1
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.2e-220 769.2 692 60.3
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 3.8e-220 768.5 683 60.6
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 6.4e-220 767.7 675 61.0
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.1e-219 766.9 762 56.7
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 1.4e-219 766.5 675 60.0
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 1.4e-219 766.5 686 60.5
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 4.1e-219 765.0 674 59.6
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 1.3e-217 760.0 683 58.7
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 3.0e-217 758.8 687 60.7
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 9.6e-216 753.8 675 59.0
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.6e-215 753.1 750 55.9
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.8e-215 752.3 750 55.9
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 2.3e-209 732.6 675 57.6
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 2.5e-208 729.2 627 60.6
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 7.3e-208 727.6 685 58.0
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 1.3e-207 726.9 775 52.0
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 1.6e-207 726.5 675 57.3
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 3.6e-207 725.3 700 56.7
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 4.0e-206 721.8 700 57.9
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 1.1e-203 713.8 675 56.3
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 7.9e-202 707.6 688 56.7
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 2.4e-198 696.0 682 55.0
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 5.6e-192 674.9 458 74.2
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 1.3e-188 663.7 675 53.2
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 1.8e-185 653.3 687 51.4
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 3.4e-181 639.0 457 70.9
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 4.1e-174 615.5 676 48.8
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 7.7e-165 584.7 686 51.6
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 8.8e-161 571.2 474 65.0
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 2.6e-160 569.7 476 63.9
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 1.1e-158 564.3 675 49.6
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.6e-152 543.1 642 51.6
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 5.7e-152 542.0 675 47.1
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 4.4e-136 489.2 974 36.7
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 4.7e-130 469.2 292 83.6
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 1.3e-124 451.1 434 57.8
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 2.3e-121 440.3 284 83.8
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 4.0e-121 439.5 469 54.2
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.5e-115 420.2 312 69.9
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 6.6e-108 395.6 689 36.6
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 7.1e-94 349.0 443 49.9
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 1.9e-91 340.9 242 69.4
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 5.6e-91 339.3 443 42.2
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.5e-88 331.3 370 53.2
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 5.1e-84 316.2 342 53.2
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 4.6e-77 293.1 219 68.9
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 8.2e-74 282.3 524 35.3
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 3.4e-72 276.9 179 76.5
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 6.5e-71 272.7 651 32.9
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 3.0e-68 263.8 197 65.0
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.6e-48 197.6 175 55.4
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.4e-48 197.2 331 38.1
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 6.7e-44 183.0 281 39.9
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.1e-41 175.6 97 83.5
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 4.4e-35 153.7 97 73.2
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 1.8e-33 148.3 94 76.6
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-32 145.2 103 69.9
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 2.2e-31 141.4 94 72.3
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 3.2e-30 137.5 85 76.5
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 4.2e-30 137.1 167 49.7
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 6.1e-29 133.3 111 64.0
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 6.1e-29 133.3 91 70.3
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 2.3e-28 131.3 87 71.3
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 4.0e-28 130.6 186 48.9
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 7.0e-25 119.8 119 57.1
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 9.1e-25 119.4 67 80.6
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.2e-24 119.0 113 55.8
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 2.0e-24 118.2 96 64.6
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 2.7e-24 117.9 102 61.8
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.0e-23 115.9 103 61.2
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-21 108.2 96 59.4
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 8.0e-21 106.3 64 71.9
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 3.0e-20 104.4 57 78.9
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 9.2e-17 92.8 81 61.7
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.5e-16 90.5 101 47.5
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.1e-14 85.9 52 73.1
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-14 85.9 52 73.1
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 4.3e-14 84.0 108 41.7
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 7.5e-11 73.2 37 91.9
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 4.1e-09 67.4 44 68.2
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 6.0e-08 63.5 80 46.2
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 6.0e-08 63.5 85 48.2
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 1.0e-07 62.8 41 73.2
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.1e-06 59.3 37 75.7
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 7.3e-06 56.6 84 33.3
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 9.5e-06 56.2 30 86.7


User provided reference genes

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