Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 8.3e-120 433.7 218 100.0
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 7.5e-113 410.6 246 87.8
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 1.2e-110 403.3 246 86.6
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 1.2e-107 393.3 247 85.4
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 8.9e-106 387.1 245 84.5
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.1e-98 362.1 250 78.0
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.0e-97 359.4 250 77.2
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.6e-97 359.0 249 76.7
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 7.5e-97 357.5 250 76.8
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 9.8e-97 357.1 249 76.7
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 1.4e-95 353.2 250 76.4
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 7.8e-94 347.4 249 74.3
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.5e-92 343.2 256 73.4
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.5e-92 343.2 256 73.4
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 2.8e-91 339.0 255 73.7
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 6.8e-82 307.8 238 70.2
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 3.8e-80 302.0 213 75.1
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.4e-79 298.1 250 66.0
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.6e-78 296.6 253 66.0
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.5e-78 295.4 252 65.5
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.9e-76 289.7 256 64.1
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 5.2e-74 281.6 255 62.4
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.2e-73 280.4 210 71.0
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.5e-73 280.0 252 61.9
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.0e-73 279.6 254 61.8
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 4.4e-73 278.5 258 62.4
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 7.6e-73 277.7 265 59.6
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 7.6e-73 277.7 250 63.6
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.2e-72 276.2 212 69.3
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.2e-72 276.2 212 69.3
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 6.4e-72 274.6 254 61.8
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.4e-72 274.6 235 64.3
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 8.4e-72 274.2 249 61.8
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 1.4e-71 273.5 260 59.2
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.4e-71 272.7 250 62.4
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 3.2e-71 272.3 229 63.8
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 4.2e-71 271.9 254 61.8
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 5.4e-71 271.6 259 59.5
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 7.1e-71 271.2 255 60.8
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 7.1e-71 271.2 245 62.4
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 9.3e-71 270.8 254 61.8
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.2e-70 270.4 264 61.0
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.2e-70 270.4 181 76.2
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.2e-70 270.4 251 62.2
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.2e-70 270.4 238 63.4
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 2.7e-70 269.2 248 60.9
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.7e-70 269.2 258 60.1
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 3.5e-70 268.9 262 60.3
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 3.5e-70 268.9 258 59.7
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 3.5e-70 268.9 250 61.6
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 3.5e-70 268.9 257 59.9
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.6e-70 268.5 231 63.6
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 4.6e-70 268.5 218 65.1
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 4.6e-70 268.5 198 69.7
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 7.8e-70 267.7 256 60.5
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 7.8e-70 267.7 244 63.5
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 1.0e-69 267.3 183 74.9
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.3e-69 266.9 246 62.2
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.3e-69 266.9 253 61.7
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.3e-69 266.9 255 60.4
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 1.7e-69 266.5 224 64.3
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.3e-69 266.2 183 75.4
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.3e-69 266.2 256 60.2
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 2.3e-69 266.2 245 61.6
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.0e-69 265.8 254 61.0
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 3.0e-69 265.8 189 72.0
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 5.1e-69 265.0 258 60.9
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 5.1e-69 265.0 251 60.2
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 5.1e-69 265.0 265 57.7
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 6.6e-69 264.6 249 60.2
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.7e-69 264.2 249 61.8
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 8.7e-69 264.2 247 59.1
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 1.1e-68 263.8 240 60.4
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.9e-68 263.1 230 65.2
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.9e-68 263.1 254 58.3
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 2.5e-68 262.7 258 58.5
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.5e-68 262.7 238 63.0
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 2.5e-68 262.7 241 63.1
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 3.3e-68 262.3 220 64.5
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.3e-68 261.9 246 60.2
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 5.6e-68 261.5 244 61.9
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 7.3e-68 261.2 218 63.8
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 9.6e-68 260.8 258 57.4
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 2.1e-67 259.6 236 62.3
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.8e-67 259.2 243 60.1
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 3.6e-67 258.8 229 62.9
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 3.6e-67 258.8 178 74.2
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 3.6e-67 258.8 218 64.7
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 3.6e-67 258.8 181 74.0
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 3.6e-67 258.8 258 58.5
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 4.8e-67 258.5 236 61.4
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 6.2e-67 258.1 187 69.0
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 8.1e-67 257.7 256 59.4
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 8.1e-67 257.7 219 61.6
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.4e-66 256.9 184 71.7
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.8e-66 256.5 256 59.4
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.4e-66 256.1 258 55.8
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 2.4e-66 256.1 241 60.6
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 5.3e-66 255.0 253 59.3
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 9.0e-66 254.2 187 69.5
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 1.2e-65 253.8 252 57.9
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.6e-65 252.7 241 59.3
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 3.4e-65 252.3 246 57.7
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 7.6e-65 251.1 176 73.9
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.3e-64 250.4 259 57.9
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.2e-64 249.6 251 57.4
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-64 249.2 257 56.4
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.4e-63 246.9 259 56.8
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.9e-63 246.5 261 55.6
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.9e-63 246.5 251 55.4
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.4e-63 246.1 254 55.9
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.4e-63 246.1 259 54.8
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 7.1e-63 244.6 262 55.0
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 7.1e-63 244.6 242 57.9
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 7.9e-62 241.1 246 56.5
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 3.0e-61 239.2 253 54.5
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 3.9e-61 238.8 262 55.3
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 6.7e-61 238.0 262 55.0
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 6.7e-61 238.0 262 55.0
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.5e-60 236.9 193 66.8
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.5e-60 236.1 254 55.9
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 4.3e-60 235.3 190 64.7
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.8e-59 232.6 213 60.1
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 3.6e-59 232.3 185 65.9
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.4e-58 230.3 202 61.4
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.4e-58 230.3 172 70.3
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 2.4e-58 229.6 184 67.4
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 3.1e-58 229.2 180 65.0
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 6.9e-58 228.0 206 60.2
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.0e-57 226.5 227 58.1
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 1.3e-56 223.8 235 55.3
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.3e-56 223.8 180 63.3
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.7e-56 223.4 176 64.8
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.2e-54 217.2 191 59.7
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.0e-49 199.9 205 54.6
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.0e-48 197.6 131 74.8
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 5.1e-45 185.3 215 52.6
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 5.1e-45 185.3 150 64.0
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.5e-44 183.7 230 49.1
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 3.7e-43 179.1 166 59.0
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 3.1e-42 176.0 205 52.7
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 3.4e-41 172.6 230 48.3
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.0e-40 171.0 108 76.9
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.2e-39 166.0 111 77.5
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 4.2e-39 165.6 242 46.3
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 1.2e-38 164.1 187 52.9
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.3e-37 159.8 171 56.7
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 8.7e-37 157.9 112 70.5
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 1.5e-36 157.1 220 43.6
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 8.2e-35 151.4 105 73.3
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.4e-33 146.0 146 57.5
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 5.9e-33 145.2 98 76.5
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 1.3e-32 144.1 161 52.8
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.5e-31 139.8 204 43.6
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 2.8e-27 126.3 81 80.2
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 6.3e-27 125.2 79 81.0
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.1e-23 114.4 76 72.4
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 3.9e-21 105.9 96 59.4
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 8.8e-21 104.8 103 54.4
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 5.3e-18 95.5 74 63.5
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.2e-14 84.3 176 35.2
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 8.8e-13 78.2 90 51.1
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.5e-12 77.4 84 52.4
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.7e-09 66.6 131 38.2
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.5e-09 66.2 42 73.8
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 3.2e-07 59.7 44 68.2
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 7.2e-07 58.5 52 59.6
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 7.2e-07 58.5 126 37.3
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.6e-06 57.4 101 35.6
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 4.7e-06 55.8 58 44.8
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 6.1e-06 55.5 117 35.0
BolC2t10115H Brassica oleracea HOM05D034141 ORTHO05D033148 8.0e-06 55.1 36 75.0


User provided reference genes

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