Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 2.8e-96 355.1 166 100.0
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 4.3e-60 235.0 113 98.2
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 2.6e-57 225.7 113 93.8
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 7.6e-57 224.2 113 92.9
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 7.6e-57 224.2 113 92.9
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 9.9e-57 223.8 113 92.9
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 1.0e-53 213.8 115 88.7
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 1.8e-50 203.0 113 85.0
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 9.0e-50 200.7 113 81.4
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 2.6e-49 199.1 113 82.3
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 2.6e-49 199.1 113 82.3
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 1.3e-48 196.8 113 81.4
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 1.3e-48 196.8 113 81.4
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 1.3e-48 196.8 113 81.4
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 3.8e-48 195.3 113 80.5
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.0e-45 185.7 113 75.2
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.5e-44 183.3 113 76.1
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.6e-43 178.7 113 74.3
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 3.6e-43 178.7 113 72.6
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 4.8e-43 178.3 118 69.5
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.1e-42 177.2 113 71.7
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 4.6e-38 161.8 116 62.9
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 7.9e-38 161.0 102 75.5
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 5.1e-37 158.3 115 63.5
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 8.1e-35 151.0 115 56.5
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 1.1e-34 150.6 115 60.0
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 1.1e-34 150.6 114 57.9
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 1.4e-34 150.2 115 59.1
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 4.0e-34 148.7 114 60.5
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 5.3e-34 148.3 115 59.1
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 9.0e-34 147.5 114 59.6
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 9.0e-34 147.5 112 58.9
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 1.2e-33 147.1 115 57.4
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 1.2e-33 147.1 115 59.1
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.5e-33 146.7 114 60.5
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 3.4e-33 145.6 117 56.4
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 4.5e-33 145.2 114 57.9
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 4.5e-33 145.2 115 57.4
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 5.8e-33 144.8 113 56.6
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 7.6e-33 144.4 115 56.5
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 7.6e-33 144.4 115 56.5
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 7.6e-33 144.4 115 56.5
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 1.0e-32 144.1 115 55.7
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 1.3e-32 143.7 115 55.7
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.3e-32 143.7 115 55.7
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 1.3e-32 143.7 115 57.4
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 1.7e-32 143.3 115 56.5
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 2.9e-32 142.5 113 56.6
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 3.8e-32 142.1 114 54.4
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 4.9e-32 141.7 114 59.6
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 6.5e-32 141.4 115 55.7
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 1.1e-31 140.6 114 54.4
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 1.9e-31 139.8 115 53.9
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 2.5e-31 139.4 116 54.3
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 4.2e-31 138.7 115 53.9
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 4.2e-31 138.7 119 52.1
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 4.2e-31 138.7 113 54.0
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 5.5e-31 138.3 115 54.8
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 5.5e-31 138.3 115 54.8
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 5.5e-31 138.3 115 51.3
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 5.5e-31 138.3 119 51.3
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 7.1e-31 137.9 115 53.9
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 7.1e-31 137.9 115 52.2
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 7.1e-31 137.9 113 55.8
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 7.1e-31 137.9 114 55.3
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 7.1e-31 137.9 115 53.0
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 9.3e-31 137.5 115 53.9
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 9.3e-31 137.5 115 53.9
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.2e-30 137.1 115 53.9
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.2e-30 137.1 116 52.6
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.2e-30 137.1 119 51.3
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.2e-30 137.1 115 53.0
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.6e-30 136.7 115 53.9
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 2.7e-30 136.0 114 53.5
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 3.5e-30 135.6 115 55.7
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 3.5e-30 135.6 135 44.4
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 3.5e-30 135.6 131 45.8
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.5e-30 135.6 115 52.2
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 4.6e-30 135.2 115 53.0
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 7.9e-30 134.4 113 54.0
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 7.9e-30 134.4 113 54.0
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.0e-29 134.0 115 52.2
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 1.3e-29 133.7 115 52.2
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.3e-29 133.7 115 53.0
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.8e-29 133.3 115 54.8
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.8e-29 133.3 116 50.0
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 2.3e-29 132.9 115 52.2
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 2.3e-29 132.9 115 53.0
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 3.0e-29 132.5 113 52.2
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.9e-29 132.1 115 52.2
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 5.1e-29 131.7 115 54.8
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 6.7e-29 131.3 120 49.2
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 6.7e-29 131.3 115 52.2
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 6.7e-29 131.3 115 50.4
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 8.7e-29 131.0 115 50.4
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.1e-28 130.6 115 52.2
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 1.1e-28 130.6 115 51.3
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.9e-28 129.8 110 54.5
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 5.7e-28 128.3 114 53.5
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 9.6e-28 127.5 137 46.7
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 9.6e-28 127.5 116 51.7
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.3e-27 127.1 115 53.9
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 1.3e-27 127.1 113 53.1
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.3e-27 127.1 113 50.4
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 4.8e-27 125.2 110 56.4
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 4.8e-27 125.2 113 54.0
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 8.2e-27 124.4 114 51.8
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.1e-26 124.0 114 50.0
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 1.1e-26 124.0 116 48.3
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.4e-26 123.6 114 50.0
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 2.4e-26 122.9 114 51.8
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 2.4e-26 122.9 114 50.9
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.1e-26 122.5 135 43.7
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.0e-25 119.8 116 46.6
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 5.8e-25 118.2 142 40.8
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 2.9e-24 115.9 110 45.5
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 5.0e-24 115.2 83 59.0
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.1e-23 114.0 104 49.0
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.4e-23 113.6 83 61.4
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 5.5e-23 111.7 115 47.0
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 7.1e-23 111.3 101 49.5
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 9.3e-23 110.9 122 47.5
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.6e-22 110.2 125 48.8
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 4.6e-22 108.6 104 48.1
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 5.7e-20 101.7 112 42.0
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 9.7e-20 100.9 111 40.5
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.3e-19 100.5 111 40.5
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 4.8e-19 98.6 110 41.8
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.0e-16 90.9 56 67.9
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 6.5e-16 88.2 82 48.8
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.4e-15 87.0 54 66.7
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.0e-12 76.6 95 35.8
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 1.7e-11 73.6 97 37.1
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.5e-09 67.0 65 43.1
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 2.6e-09 66.2 82 40.2
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.3e-08 63.9 68 39.7


User provided reference genes

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