Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 6.8e-180 634.0 355 100.0
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 6.8e-172 607.4 340 100.0
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 2.0e-171 605.9 340 99.7
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.0e-90 337.8 430 55.1
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 4.7e-88 328.9 431 54.8
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 3.9e-87 325.9 438 52.3
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 5.7e-86 322.0 448 51.6
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 3.2e-81 306.2 462 47.8
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 4.7e-80 302.4 470 48.5
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 4.8e-77 292.4 458 47.6
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 8.3e-77 291.6 342 62.0
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 6.1e-72 275.4 402 49.5
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 4.0e-71 272.7 403 49.4
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 5.2e-71 272.3 396 49.2
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 6.8e-71 271.9 397 49.1
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.6e-70 270.0 441 46.5
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 3.7e-69 266.2 403 48.9
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.8e-68 263.8 426 45.1
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 5.4e-68 262.3 438 43.6
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 9.1e-68 261.5 440 44.8
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-67 261.2 440 44.8
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 1.6e-67 260.8 433 45.0
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.3e-66 257.7 444 45.0
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 3.8e-66 256.1 410 47.8
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 4.2e-65 252.7 432 44.9
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 4.2e-65 252.7 432 44.9
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 4.2e-65 252.7 432 44.9
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 7.2e-65 251.9 455 43.3
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.8e-63 247.3 435 43.7
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 4.0e-63 246.1 449 45.7
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 5.2e-63 245.7 455 42.4
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 8.9e-63 245.0 413 46.7
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 9.8e-62 241.5 436 43.8
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 2.2e-61 240.4 457 41.1
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 2.8e-61 240.0 409 46.0
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 2.8e-61 240.0 459 41.2
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 3.7e-61 239.6 416 44.0
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 3.7e-61 239.6 423 43.0
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 3.7e-61 239.6 423 43.0
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 6.3e-61 238.8 419 43.9
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 6.3e-61 238.8 391 43.7
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 6.3e-61 238.8 459 41.0
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 8.3e-61 238.4 451 44.1
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.4e-60 236.9 459 39.4
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.6e-59 234.2 348 48.6
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 2.0e-59 233.8 414 42.5
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.0e-59 233.8 411 42.1
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 2.0e-59 233.8 459 39.7
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.7e-59 233.4 453 43.0
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 3.5e-59 233.0 455 41.3
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 1.0e-58 231.5 436 42.0
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 1.3e-58 231.1 405 43.2
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.7e-58 230.7 420 44.8
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 2.3e-58 230.3 465 40.4
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 3.9e-58 229.6 408 42.2
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 5.0e-58 229.2 431 41.8
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 5.0e-58 229.2 399 44.9
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 5.0e-58 229.2 455 40.4
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 8.6e-58 228.4 424 44.8
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.1e-57 228.0 415 44.8
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.5e-57 227.6 442 40.7
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 1.5e-57 227.6 451 40.4
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.9e-57 227.3 454 38.8
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 1.9e-57 227.3 429 44.1
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 2.5e-57 226.9 422 41.2
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 2.5e-57 226.9 424 43.6
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 9.5e-57 224.9 468 40.0
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.2e-56 224.6 433 43.4
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 1.2e-56 224.6 457 39.8
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 3.6e-56 223.0 462 41.8
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 4.7e-56 222.6 433 43.9
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 1.8e-55 220.7 464 39.0
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.8e-55 220.7 451 41.7
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 2.3e-55 220.3 443 40.0
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 3.1e-55 219.9 469 42.6
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 3.1e-55 219.9 429 42.0
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 5.2e-55 219.2 453 37.7
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 6.8e-55 218.8 463 38.0
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 1.2e-54 218.0 418 41.1
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 2.0e-54 217.2 433 41.6
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.0e-54 217.2 419 39.9
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.0e-54 217.2 436 40.4
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.6e-54 216.9 444 41.2
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.6e-54 216.9 430 40.7
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 3.4e-54 216.5 416 41.3
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 3.4e-54 216.5 460 41.1
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 4.4e-54 216.1 433 40.4
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 4.4e-54 216.1 472 38.3
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.3e-53 214.5 419 44.4
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.7e-53 214.2 416 41.8
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 1.7e-53 214.2 489 36.4
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 2.2e-53 213.8 489 37.2
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 2.9e-53 213.4 461 39.3
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.9e-53 213.4 443 41.8
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 3.7e-53 213.0 448 42.0
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 4.9e-53 212.6 431 42.9
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 4.9e-53 212.6 423 44.0
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.1e-52 211.5 382 45.5
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.9e-52 210.7 445 37.5
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.4e-52 210.3 497 38.4
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 3.2e-52 209.9 447 39.4
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 3.2e-52 209.9 463 39.1
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 9.2e-52 208.4 433 43.9
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 2.0e-51 207.2 474 36.3
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.0e-51 207.2 440 38.6
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 2.7e-51 206.8 448 37.5
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 4.6e-51 206.1 435 37.7
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 4.6e-51 206.1 449 39.6
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 4.6e-51 206.1 466 39.5
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 4.6e-51 206.1 438 37.9
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 4.6e-51 206.1 453 37.5
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 7.8e-51 205.3 384 45.1
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 1.0e-50 204.9 427 42.9
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.3e-50 204.5 430 37.9
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.7e-50 204.1 448 40.0
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.7e-50 204.1 439 40.3
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 3.0e-50 203.4 479 37.0
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 5.0e-50 202.6 460 39.3
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 8.6e-50 201.8 488 36.1
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.1e-49 201.4 431 42.5
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 1.9e-49 200.7 457 40.7
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 3.3e-49 199.9 312 43.6
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 4.3e-49 199.5 441 37.9
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 7.3e-49 198.7 438 38.1
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.2e-48 198.0 441 39.9
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.2e-48 198.0 407 39.3
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 1.2e-48 198.0 440 40.9
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 2.1e-48 197.2 437 41.0
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 6.2e-48 195.7 366 43.7
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 8.1e-48 195.3 481 36.4
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-47 194.9 359 47.6
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.4e-47 194.5 233 51.5
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 1.8e-47 194.1 457 38.3
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 3.1e-47 193.4 471 38.2
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 3.1e-47 193.4 477 37.9
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 4.0e-47 193.0 438 40.4
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 4.0e-47 193.0 232 51.7
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 1.2e-46 191.4 495 35.8
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.0e-46 190.7 472 36.7
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 9.8e-46 188.3 523 34.2
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 1.7e-45 187.6 456 36.2
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 2.2e-45 187.2 448 36.6
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 5.4e-44 182.6 155 65.8
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 6.0e-43 179.1 466 37.3
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.7e-42 177.6 453 36.0
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 5.1e-42 176.0 479 34.9
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.9e-41 174.1 446 37.9
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 3.6e-40 169.9 403 36.0
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.5e-38 164.5 255 42.4
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 4.3e-33 146.4 390 34.1
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 9.6e-33 145.2 488 32.6
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 1.1e-31 141.7 144 50.0
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 4.0e-31 139.8 411 35.3
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.5e-30 137.9 290 37.9
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 2.9e-29 133.7 291 39.9
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 4.9e-29 132.9 256 40.2
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.6e-27 127.9 100 70.0
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.0e-26 125.2 86 69.8
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 1.4e-23 114.8 129 45.7
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 9.0e-23 112.1 176 43.8
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 1.7e-21 107.8 86 69.8
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 3.1e-15 87.0 327 30.9
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 6.9e-15 85.9 112 43.8
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 3.2e-12 77.0 107 48.6
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 3.2e-12 77.0 107 48.6
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 4.2e-12 76.6 134 34.3
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 7.1e-12 75.9 111 47.7
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 2.3e-10 70.9 70 51.4
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-09 68.2 63 65.1
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 1.5e-09 68.2 63 65.1
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 1.6e-08 64.7 87 42.5
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.2e-06 58.5 123 37.4
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 1.5e-06 58.2 61 55.7
CBR_g34252 Chara braunii HOM05D002258 ORTHO05D002539 2.6e-06 57.4 128 35.2
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 5.8e-06 56.2 145 35.2


User provided reference genes

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