Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03697 Brassica carinata HOM05D001816 ORTHO05D091898 2.5e-125 452.2 239 100.0
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 3.8e-17 92.8 55 80.0
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 3.8e-17 92.8 55 80.0
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 3.8e-17 92.8 55 80.0
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 3.8e-17 92.8 55 80.0
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 3.8e-17 92.8 55 80.0
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 3.8e-17 92.8 55 80.0
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 3.8e-17 92.8 55 80.0
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 3.8e-17 92.8 55 80.0
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 8.4e-17 91.7 55 78.2
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 8.4e-17 91.7 55 78.2
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 8.4e-17 91.7 55 78.2
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 8.4e-17 91.7 55 78.2
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 8.4e-17 91.7 55 78.2
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 8.4e-17 91.7 55 78.2
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 1.1e-16 91.3 48 89.6
BcaC05g27449 Brassica carinata HOM05D001816 ORTHO05D002001 1.1e-16 91.3 55 76.4
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 1.1e-16 91.3 55 76.4
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 1.1e-16 91.3 48 89.6
C05p34040 Brassica napus HOM05D001816 ORTHO05D002001 1.1e-16 91.3 55 76.4
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 1.1e-16 91.3 48 89.6
BolC5t32139H Brassica oleracea HOM05D001816 ORTHO05D002001 1.1e-16 91.3 55 76.4
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 1.1e-16 91.3 55 76.4
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 1.9e-16 90.5 55 78.2
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 7.1e-16 88.6 49 83.7
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 9.3e-16 88.2 163 37.4
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 2.1e-15 87.0 47 85.1
PSO063G5047 Papaver somniferum HOM05D001816 ORTHO05D002001 3.5e-15 86.3 54 72.2
PSO063G5328 Papaver somniferum HOM05D001816 ORTHO05D002001 3.5e-15 86.3 54 72.2
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 3.5e-15 86.3 54 72.2
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 6.0e-15 85.5 54 74.1
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 7.9e-15 85.1 54 72.2
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 7.9e-15 85.1 54 72.2
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 1.0e-14 84.7 55 74.5
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 1.0e-14 84.7 54 74.1
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.0e-14 84.7 54 72.2
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.0e-14 84.7 54 75.9
SEGI_12349 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 1.3e-14 84.3 54 70.4
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 1.3e-14 84.3 54 74.1
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 1.8e-14 84.0 47 83.0
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 1.8e-14 84.0 54 72.2
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 1.8e-14 84.0 54 72.2
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 1.8e-14 84.0 54 70.4
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.8e-14 84.0 54 72.2
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.8e-14 84.0 54 72.2
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 1.8e-14 84.0 54 72.2
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 2.3e-14 83.6 47 83.0
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 2.3e-14 83.6 47 83.0
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 2.3e-14 83.6 47 83.0
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 2.3e-14 83.6 47 83.0
Glyma.12G027850 Glycine max HOM05D001816 ORTHO05D002001 2.3e-14 83.6 51 76.5
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 2.3e-14 83.6 54 70.4
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 3.0e-14 83.2 54 72.2
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 3.0e-14 83.2 54 72.2
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 3.0e-14 83.2 54 72.2
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 3.0e-14 83.2 47 80.9
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 3.0e-14 83.2 47 80.9
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 3.0e-14 83.2 54 70.4
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 3.0e-14 83.2 47 83.0
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 3.0e-14 83.2 47 83.0
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 3.0e-14 83.2 54 70.4
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 3.0e-14 83.2 47 83.0
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 3.0e-14 83.2 54 72.2
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 3.9e-14 82.8 54 72.2
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 3.9e-14 82.8 51 74.5
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 5.1e-14 82.4 54 70.4
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 5.1e-14 82.4 54 72.2
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 5.1e-14 82.4 54 72.2
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 5.1e-14 82.4 54 72.2
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 5.1e-14 82.4 54 70.4
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 6.7e-14 82.0 54 70.4
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 6.7e-14 82.0 54 70.4
Medtr4g074670 Medicago truncatula HOM05D001816 ORTHO05D002001 6.7e-14 82.0 47 80.9
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 6.7e-14 82.0 54 72.2
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 6.7e-14 82.0 54 72.2
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 6.7e-14 82.0 47 83.0
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 8.7e-14 81.6 54 70.4
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 8.7e-14 81.6 54 70.4
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 8.7e-14 81.6 54 70.4
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 8.7e-14 81.6 54 70.4
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 8.7e-14 81.6 54 70.4
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 8.7e-14 81.6 54 74.1
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 1.1e-13 81.3 54 68.5
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 1.1e-13 81.3 54 70.4
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 1.1e-13 81.3 54 68.5
Sc06g0002420 Simmondsia chinensis HOM05D001816 ORTHO05D002001 1.1e-13 81.3 54 72.2
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 1.5e-13 80.9 54 70.4
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 1.5e-13 80.9 54 70.4
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 1.9e-13 80.5 43 86.0
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 1.9e-13 80.5 43 86.0
Cpa.g.sc1758.1 Carica papaya HOM05D001816 ORTHO05D002001 1.9e-13 80.5 54 72.2
Duzib052G1218 Durio zibethinus HOM05D001816 ORTHO05D002001 1.9e-13 80.5 54 66.7
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 1.9e-13 80.5 54 66.7
Gohir.D12G138232 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.9e-13 80.5 54 66.7
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.9e-13 80.5 54 66.7
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 1.9e-13 80.5 54 68.5
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 2.5e-13 80.1 54 70.4
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 2.5e-13 80.1 54 68.5
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 2.5e-13 80.1 54 68.5
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 2.5e-13 80.1 54 68.5
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 3.3e-13 79.7 54 68.5
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 3.3e-13 79.7 54 70.4
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 3.3e-13 79.7 54 70.4
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 4.3e-13 79.3 54 70.4
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 4.3e-13 79.3 54 70.4
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 4.3e-13 79.3 54 70.4
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 4.3e-13 79.3 54 66.7
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 5.7e-13 79.0 47 80.9
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 5.7e-13 79.0 54 70.4
Sed0015099 Sechium edule HOM05D001816 ORTHO05D002001 5.7e-13 79.0 45 82.2
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 5.7e-13 79.0 54 66.7
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 7.4e-13 78.6 47 78.7
ECA246G0614 Erigeron canadensis HOM05D001816 ORTHO05D002001 7.4e-13 78.6 79 54.4
CBR_g34895 Chara braunii HOM05D001816 ORTHO05D002001 9.7e-13 78.2 47 78.7
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 9.7e-13 78.2 54 68.5
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 9.7e-13 78.2 54 68.5
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 9.7e-13 78.2 54 66.7
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 9.7e-13 78.2 77 54.5
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 9.7e-13 78.2 54 70.4
Oeu027898.1 Olea europaea HOM05D001816 ORTHO05D002001 1.3e-12 77.8 52 71.2
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.6e-12 77.4 54 64.8
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.6e-12 77.4 54 64.8
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 1.6e-12 77.4 54 64.8
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.2e-12 77.0 54 66.7
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 2.2e-12 77.0 54 66.7
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 2.8e-12 76.6 54 64.8
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 2.8e-12 76.6 54 66.7
Actinidia27039 Actinidia chinensis HOM05D001816 ORTHO05D002001 3.7e-12 76.3 56 66.1
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 3.7e-12 76.3 54 64.8
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 4.8e-12 75.9 54 64.8
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 6.3e-12 75.5 62 62.9
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 6.3e-12 75.5 44 79.5
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 1.4e-11 74.3 54 64.8
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 1.4e-11 74.3 54 64.8
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.4e-11 74.3 54 66.7
Cc11_g00060 Coffea canephora HOM05D001816 ORTHO05D002001 2.4e-11 73.6 54 63.0
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.4e-11 73.6 54 61.1
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 2.4e-11 73.6 49 69.4
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 4.1e-11 72.8 54 59.3
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 5.3e-11 72.4 47 74.5
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 6.9e-11 72.0 54 61.1
PRCOL_00001517 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 6.9e-11 72.0 47 70.2
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 1.2e-10 71.2 49 63.3
Cre02.g143200 Chlamydomonas reinhardtii HOM05D001816 ORTHO05D002001 4.5e-10 69.3 47 68.1
MCO03G183 Micromonas commoda HOM05D001816 ORTHO05D002001 1.7e-09 67.4 70 50.0
MELO3C024031.2 Cucumis melo HOM05D001816 ORTHO05D002001 1.4e-08 64.3 35 82.9
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 9.4e-08 61.6 43 67.4
AL1G53150 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 2.3e-06 57.0 37 73.0
CAN.G899.11 Capsicum annuum HOM05D001816 ORTHO05D002001 3.9e-06 56.2 31 80.6
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 8.8e-06 55.1 26 96.2


User provided reference genes

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