Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1616.7 798 100.0
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1616.7 798 100.0
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1610.5 799 99.7
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1590.9 798 98.1
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1584.7 799 97.9
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1581.6 798 97.4
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1546.9 798 95.6
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1531.5 798 93.9
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1528.5 798 93.9
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1521.5 799 93.2
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1517.3 799 93.1
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1513.0 799 93.1
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1512.7 798 93.0
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1501.1 800 92.9
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1481.8 797 90.2
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1478.8 797 90.1
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1453.7 798 88.1
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1400.2 854 81.7
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1375.5 757 88.8
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1361.3 812 80.9
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1295.8 808 77.6
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1291.2 807 77.4
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1289.2 808 77.4
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1288.9 808 77.2
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1287.3 809 76.3
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1286.9 806 77.0
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1286.9 808 77.4
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1285.4 806 77.4
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1285.0 808 77.2
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1281.9 808 76.7
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1281.9 806 76.4
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1281.2 806 77.4
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1280.8 808 76.7
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1280.4 807 76.3
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1278.8 806 76.1
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1275.8 811 75.8
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 817 75.8
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1274.2 807 75.7
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1273.8 806 76.6
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1271.1 806 76.9
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1270.8 811 76.2
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1270.4 808 75.1
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1270.4 806 76.9
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1269.2 805 75.7
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1266.9 806 76.1
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1266.9 811 75.7
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 811 75.5
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1263.8 807 74.6
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1263.4 811 75.1
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1261.9 806 75.4
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1261.5 800 76.0
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1259.6 806 75.8
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1258.4 811 75.0
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1256.9 806 75.8
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1256.1 803 75.5
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1255.7 804 75.5
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1255.4 810 75.9
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1254.6 807 75.3
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1254.2 807 75.6
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1253.4 808 75.1
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1252.7 806 75.6
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1251.9 803 75.6
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1250.3 807 74.2
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1246.1 806 75.4
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1245.0 805 75.2
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1242.3 805 75.3
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1236.1 804 74.1
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1231.5 811 73.0
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1228.4 804 73.5
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1221.8 883 68.9
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1221.5 807 72.9
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1219.5 796 73.4
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1219.1 801 73.4
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1215.3 798 73.2
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1211.4 807 72.9
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1208.4 812 72.7
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1203.7 804 72.0
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1202.2 808 72.4
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1201.8 801 72.0
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1200.7 804 71.8
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1200.3 811 72.4
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1199.9 799 72.5
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1197.6 805 72.2
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1196.8 804 71.6
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1193.7 808 72.4
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1192.6 828 71.3
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1183.3 800 71.6
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1182.5 805 72.2
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1174.5 804 70.3
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1173.7 803 70.9
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1171.0 804 69.5
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1167.9 869 67.7
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1166.0 804 69.8
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1158.7 857 66.2
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1158.3 800 70.5
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1156.7 805 69.7
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1154.0 786 72.1
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1152.9 807 72.1
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1152.5 803 69.1
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1152.1 801 70.2
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1139.0 810 69.3
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1128.6 818 68.0
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1115.5 911 62.7
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1102.4 811 67.4
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1098.2 775 68.5
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1093.6 812 66.4
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1086.2 962 59.1
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1083.2 802 66.1
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1080.1 820 64.5
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1080.1 962 58.9
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 4.3e-299 1031.2 805 64.2
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 1.1e-291 1006.5 794 62.3
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 3.1e-289 998.4 812 63.8
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 2.1e-269 932.6 802 59.1
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.1e-267 926.8 605 73.4
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.8e-234 815.8 780 57.3
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 6.8e-196 688.3 853 46.0
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 2.9e-178 629.8 381 77.7
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 5.1e-167 592.4 827 41.5
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.8e-151 540.8 802 41.5
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 1.6e-149 534.3 941 35.0
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 2.7e-144 516.9 843 38.9
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 7.7e-123 445.7 417 56.6
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 3.5e-107 393.7 316 60.4
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.5e-105 387.5 244 73.0
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 5.9e-99 366.3 342 58.8
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 2.3e-87 327.8 236 70.8
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 6.6e-74 283.1 198 69.2
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.1e-65 255.8 173 74.6
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 6.6e-50 203.4 665 28.0
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 9.9e-46 189.5 141 71.6
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 8.4e-45 186.4 190 57.4
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 6.5e-37 160.2 90 80.0
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 9.3e-36 156.4 263 40.3
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 1.9e-33 148.7 103 68.0
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 3.3e-33 147.9 133 51.1
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 4.1e-31 141.0 104 61.5
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.4e-28 132.5 176 44.3
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.4e-28 132.5 100 69.0
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 3.2e-28 131.3 118 57.6
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 5.5e-28 130.6 190 42.1
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 7.1e-28 130.2 120 59.2
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 2.7e-27 128.3 113 50.4
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 6.1e-27 127.1 89 71.9
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 2.8e-24 118.2 259 32.0
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 1.5e-22 112.5 114 52.6
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 2.2e-21 108.6 175 38.9
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 2.7e-19 101.7 65 72.3
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 5.7e-17 94.0 50 84.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 1.7e-16 92.4 73 67.1
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.7e-16 91.3 43 90.7
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 4.8e-16 90.9 58 74.1
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 2.2e-13 82.0 68 60.3
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.4e-12 79.3 143 43.4
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 2.1e-11 75.5 459 21.8
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 6.1e-11 73.9 60 51.7
Manes.16G131400 Manihot esculenta HOM05D000344 ORTHO05D003478 7.9e-11 73.6 404 22.3
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 1.0e-10 73.2 129 37.2
CsaV3_4G036430 Cucumis sativus L. HOM05D000344 ORTHO05D003478 1.4e-10 72.8 460 21.5
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 4.4e-09 67.8 68 52.9
GSVIVG01035988001 Vitis vinifera HOM05D000344 ORTHO05D003478 7.4e-09 67.0 384 22.1
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 2.8e-08 65.1 62 51.6
TAR626G1591 Trochodendron aralioides HOM05D000344 ORTHO05D003478 2.8e-08 65.1 421 21.6
Lsat_1_v5_gn_3_22740 Lactuca sativa HOM05D000344 ORTHO05D003478 3.1e-07 61.6 464 21.8
Nn8g40092 Nelumbo nucifera HOM05D000344 ORTHO05D003478 3.1e-07 61.6 407 20.9


User provided reference genes

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