Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 1.3e-70 269.6 142 100.0
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 1.7e-49 199.5 142 81.0
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 1.7e-49 199.5 142 81.0
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 4.7e-39 164.9 121 73.6
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 6.3e-36 154.5 119 69.7
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.8e-35 152.9 122 67.2
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 5.9e-34 147.9 122 64.8
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 7.7e-34 147.5 124 67.7
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 2.2e-33 146.0 121 66.9
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 2.2e-33 146.0 121 66.9
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 3.8e-33 145.2 121 66.9
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 3.8e-33 145.2 121 66.9
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 3.8e-33 145.2 121 66.9
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 2.7e-31 139.0 121 64.5
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 6.1e-31 137.9 123 61.8
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 9.7e-29 130.6 130 58.5
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 1.3e-28 130.2 130 58.5
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 1.7e-28 129.8 122 63.1
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 2.8e-28 129.0 122 63.9
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 1.1e-27 127.1 132 57.6
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 1.1e-27 127.1 132 57.6
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.4e-27 126.7 130 56.9
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.4e-27 126.7 128 54.7
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.8e-27 126.3 133 56.4
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 1.6e-26 123.2 122 62.3
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 1.6e-26 123.2 122 62.3
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.6e-26 123.2 118 56.8
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 1.6e-26 123.2 133 56.4
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.6e-26 123.2 130 53.8
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.0e-26 122.9 132 54.5
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 2.7e-26 122.5 126 58.7
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 3.5e-26 122.1 133 52.6
BraA08t32263Z Brassica rapa HOM05D003909 ORTHO05D004478 3.5e-26 122.1 77 87.0
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 1.7e-25 119.8 118 57.6
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 2.2e-25 119.4 121 56.2
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 3.8e-25 118.6 130 55.4
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 5.0e-25 118.2 126 55.6
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 6.5e-25 117.9 128 57.0
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 8.5e-25 117.5 128 53.9
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 8.5e-25 117.5 121 55.4
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 8.5e-25 117.5 120 56.7
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.1e-24 117.1 138 51.4
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.1e-24 117.1 128 56.2
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 1.5e-24 116.7 139 49.6
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 3.2e-24 115.5 132 51.5
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 3.2e-24 115.5 138 48.6
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 4.2e-24 115.2 115 60.0
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 4.2e-24 115.2 133 54.9
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 5.5e-24 114.8 120 60.0
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 7.2e-24 114.4 120 55.0
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 7.2e-24 114.4 138 47.8
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 7.2e-24 114.4 138 48.6
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 7.2e-24 114.4 133 54.1
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 9.4e-24 114.0 138 48.6
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.2e-23 113.6 120 59.2
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.2e-23 113.6 130 50.8
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.6e-23 113.2 140 47.1
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.6e-23 113.2 125 48.0
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 1.6e-23 113.2 114 54.4
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 2.7e-23 112.5 130 53.8
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 2.7e-23 112.5 137 46.7
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 3.6e-23 112.1 124 55.6
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 4.7e-23 111.7 133 52.6
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 6.1e-23 111.3 129 52.7
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 8.0e-23 110.9 136 50.7
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.0e-22 110.5 122 54.1
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 1.0e-22 110.5 134 50.0
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.0e-22 110.5 125 52.0
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 1.4e-22 110.2 133 51.1
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.8e-22 109.8 140 51.4
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.3e-22 109.4 137 50.4
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 2.3e-22 109.4 133 52.6
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 2.3e-22 109.4 124 51.6
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.0e-22 109.0 129 50.4
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 4.0e-22 108.6 113 57.5
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 5.2e-22 108.2 127 51.2
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 5.2e-22 108.2 134 48.5
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 6.8e-22 107.8 114 60.5
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 6.8e-22 107.8 133 51.9
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 6.8e-22 107.8 137 48.9
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 8.8e-22 107.5 114 58.8
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 8.8e-22 107.5 127 53.5
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 1.2e-21 107.1 132 48.5
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.2e-21 107.1 119 53.8
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.2e-21 107.1 141 46.8
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.5e-21 106.7 112 52.7
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.5e-21 106.7 128 49.2
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 2.0e-21 106.3 122 54.9
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 2.6e-21 105.9 140 46.4
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 4.4e-21 105.1 107 59.8
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 5.7e-21 104.8 113 55.8
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 9.8e-21 104.0 132 49.2
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 9.8e-21 104.0 110 54.5
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 9.8e-21 104.0 130 47.7
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.3e-20 103.6 130 47.7
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.7e-20 103.2 102 57.8
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.7e-20 103.2 122 50.0
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 2.2e-20 102.8 123 49.6
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.7e-20 102.1 132 48.5
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 4.8e-20 101.7 132 48.5
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 4.8e-20 101.7 136 47.8
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 6.3e-20 101.3 137 46.7
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 8.3e-20 100.9 113 54.9
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 8.3e-20 100.9 113 55.8
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.1e-19 100.5 121 52.9
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.1e-19 100.5 134 47.0
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.4e-19 100.1 113 54.0
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 1.4e-19 100.1 122 52.5
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 2.4e-19 99.4 133 48.9
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.1e-19 99.0 138 48.6
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 3.1e-19 99.0 132 46.2
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 4.1e-19 98.6 134 47.0
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 5.4e-19 98.2 136 47.1
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.2e-18 97.1 119 55.5
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 2.0e-18 96.3 133 45.9
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 2.7e-18 95.9 113 55.8
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 4.5e-18 95.1 113 56.6
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 5.9e-18 94.7 129 45.7
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 7.7e-18 94.4 121 52.1
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.3e-17 93.6 121 50.4
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.3e-17 93.6 121 50.4
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 1.3e-17 93.6 121 52.9
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 1.7e-17 93.2 136 46.3
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.7e-17 93.2 121 50.4
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 3.8e-17 92.0 113 54.9
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 6.5e-17 91.3 131 46.6
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 8.6e-17 90.9 109 56.0
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 1.5e-16 90.1 126 47.6
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 1.5e-16 90.1 130 46.9
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 2.5e-16 89.4 111 55.0
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 3.3e-16 89.0 109 53.2
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 3.3e-16 89.0 121 47.9
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 5.5e-16 88.2 78 64.1
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 7.2e-16 87.8 105 53.3
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.2e-15 87.0 134 43.3
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.2e-15 87.0 114 50.0
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 3.6e-15 85.5 128 47.7
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.6e-15 85.5 130 45.4
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.6e-15 85.5 135 43.7
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 4.7e-15 85.1 128 46.1
A08p02160 Brassica napus HOM05D003909 ORTHO05D004478 1.0e-14 84.0 116 51.7
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.0e-14 82.4 137 43.1
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 2.0e-13 79.7 110 47.3
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.6e-13 79.3 146 43.8
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 3.4e-13 79.0 122 44.3
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 3.4e-13 79.0 112 42.9
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 4.4e-13 78.6 103 45.6
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 7.5e-13 77.8 111 47.7
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 7.5e-13 77.8 111 47.7
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 7.5e-13 77.8 111 47.7
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 7.5e-13 77.8 125 43.2
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.8e-12 75.9 71 53.5
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 2.0e-10 69.7 109 44.0
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 7.8e-10 67.8 118 41.5
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.9e-09 65.9 143 37.1
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.5e-08 63.5 129 39.5
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 5.6e-08 61.6 92 41.3
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.8e-07 59.3 117 40.2
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 2.3e-06 56.2 101 37.6


User provided reference genes

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