Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36813 Brassica carinata HOM05D004777 ORTHO05D006240 2.3e-99 365.5 182 100.0
Sp3g00590 Schrenkiella parvula HOM05D004777 ORTHO05D006240 3.7e-49 198.7 280 47.1
Carub.0003s0061 Capsella rubella HOM05D004777 ORTHO05D006240 4.9e-49 198.4 280 47.5
A05p44530 Brassica napus HOM05D004777 ORTHO05D006240 6.4e-49 198.0 280 47.9
BraA05t23204Z Brassica rapa HOM05D004777 ORTHO05D006240 6.4e-49 198.0 280 47.9
C09p75120 Brassica napus HOM05D004777 ORTHO05D006240 1.4e-48 196.8 280 47.5
AT3G01480 Arabidopsis thaliana HOM05D004777 ORTHO05D006240 3.2e-48 195.7 280 46.8
CARHR075480 Cardamine hirsuta HOM05D004777 ORTHO05D006240 4.1e-48 195.3 280 47.5
BolC5t35152H Brassica oleracea HOM05D004777 ORTHO05D006240 1.6e-47 193.4 280 47.1
AL3G10690 Arabidopsis lyrata HOM05D004777 ORTHO05D006240 4.6e-47 191.8 280 46.1
Aa31LG5G10580 Aethionema arabicum HOM05D004777 ORTHO05D006240 5.0e-46 188.3 293 44.4
THA.LOC104802404 Tarenaya hassleriana HOM05D004777 ORTHO05D006240 8.1e-44 181.0 280 42.9
Lsat_1_v5_gn_0_26221 Lactuca sativa HOM05D004777 ORTHO05D006240 3.1e-43 179.1 252 43.3
Atru.BG.27.p Acer truncatum HOM05D004777 ORTHO05D006240 2.0e-42 176.4 277 41.9
CiPaw.03G037400 Carya illinoinensis HOM05D004777 ORTHO05D006240 2.0e-42 176.4 280 42.1
arahy.Tifrunner.gnm1.ann1.8Y3CFZ Arachis hypogaea HOM05D004777 ORTHO05D006240 4.4e-42 175.3 253 44.7
arahy.Tifrunner.gnm1.ann1.8ZV6UW Arachis hypogaea HOM05D004777 ORTHO05D006240 4.4e-42 175.3 253 44.7
Prupe.3G283500 Prunus persica HOM05D004777 ORTHO05D006240 1.3e-41 173.7 280 42.9
MD09G1035000 Malus domestica HOM05D004777 ORTHO05D006240 2.9e-41 172.6 280 42.5
PGR142G2638 Punica granatum HOM05D004777 ORTHO05D006240 3.7e-41 172.2 280 41.1
Cpa.g.sc186.15 Carica papaya HOM05D004777 ORTHO05D006240 4.9e-41 171.8 280 41.8
Thecc.04G008400 Theobroma cacao HOM05D004777 ORTHO05D006240 1.1e-40 170.6 280 41.1
TWI56G1110 Tripterygium wilfordii HOM05D004777 ORTHO05D006240 1.1e-40 170.6 280 40.4
Dinv33499 Davidia involucrata HOM05D004777 ORTHO05D006240 1.4e-40 170.2 282 40.8
MD17G1035100 Malus domestica HOM05D004777 ORTHO05D006240 1.4e-40 170.2 280 41.8
Manes.15G183100 Manihot esculenta HOM05D004777 ORTHO05D006240 1.4e-40 170.2 280 40.7
Rhsim08G0055400 Rhododendron simsii HOM05D004777 ORTHO05D006240 1.4e-40 170.2 280 40.4
vmacro18239 Vaccinium macrocarpon HOM05D004777 ORTHO05D006240 1.4e-40 170.2 280 41.8
TAR374G0088 Trochodendron aralioides HOM05D004777 ORTHO05D006240 2.4e-40 169.5 280 39.3
TAR622G1080 Trochodendron aralioides HOM05D004777 ORTHO05D006240 2.4e-40 169.5 280 40.7
Gohir.D07G226300 Gossypium hirsutum HOM05D004777 ORTHO05D006240 4.1e-40 168.7 280 40.0
Gorai.001G261200 Gossypium raimondii HOM05D004777 ORTHO05D006240 4.1e-40 168.7 280 40.0
DCAR_011208 Daucus carota HOM05D004777 ORTHO05D006240 5.4e-40 168.3 280 41.1
Actinidia16931 Actinidia chinensis HOM05D004777 ORTHO05D006240 7.1e-40 167.9 280 40.4
CSS0014615 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 9.2e-40 167.5 280 41.1
Ciclev10015286m.g Citrus clementina HOM05D004777 ORTHO05D006240 9.2e-40 167.5 280 41.4
Duzib187G0683 Durio zibethinus HOM05D004777 ORTHO05D006240 1.2e-39 167.2 280 40.7
MELO3C009952.2 Cucumis melo HOM05D004777 ORTHO05D006240 1.6e-39 166.8 280 40.7
Eucgr.I01816 Eucalyptus grandis HOM05D004777 ORTHO05D006240 1.6e-39 166.8 280 41.1
CsaV3_3G042370 Cucumis sativus L. HOM05D004777 ORTHO05D006240 2.1e-39 166.4 280 40.4
HanXRQChr17g0547881 Helianthus annuus HOM05D004777 ORTHO05D006240 2.1e-39 166.4 280 39.3
Lj7A591G73 Lonicera japonica HOM05D004777 ORTHO05D006240 2.1e-39 166.4 280 40.0
Duzib147G0776 Durio zibethinus HOM05D004777 ORTHO05D006240 2.7e-39 166.0 280 40.4
QL02p076729 Quercus lobata HOM05D004777 ORTHO05D006240 2.7e-39 166.0 280 38.9
ECA246G3514 Erigeron canadensis HOM05D004777 ORTHO05D006240 3.5e-39 165.6 280 38.9
VMungo0464G0641 Vigna mungo HOM05D004777 ORTHO05D006240 3.5e-39 165.6 280 40.7
BolC2t09566H Brassica oleracea HOM05D004777 ORTHO05D022002 4.6e-39 165.2 188 54.8
Phvul.004G017000 Phaseolus vulgaris HOM05D004777 ORTHO05D006240 4.6e-39 165.2 280 40.7
Potri.001G351400 Populus trichocarpa HOM05D004777 ORTHO05D006240 4.6e-39 165.2 280 39.3
Sabra16G0231000 Salix brachista HOM05D004777 ORTHO05D006240 4.6e-39 165.2 280 39.3
Lj2g0000040 Lotus japonicus HOM05D004777 ORTHO05D006240 6.0e-39 164.9 280 40.0
PGSC0003DMG401000527 Solanum tuberosum HOM05D004777 ORTHO05D006240 6.0e-39 164.9 280 40.0
Glyma.13G169500 Glycine max HOM05D004777 ORTHO05D006240 7.8e-39 164.5 280 40.4
Gohir.A09G026100 Gossypium hirsutum HOM05D004777 ORTHO05D006240 1.0e-38 164.1 280 38.6
Solyc02g086910.4 Solanum lycopersicum HOM05D004777 ORTHO05D006240 1.0e-38 164.1 280 39.6
Peaxi162Scf00129g01038 Petunia axillaris HOM05D004777 ORTHO05D006240 1.3e-38 163.7 280 40.4
FAN09G3008 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.7e-38 163.3 280 39.6
Medtr6g007607 Medicago truncatula HOM05D004777 ORTHO05D006240 1.7e-38 163.3 280 40.4
CSS0014422 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 2.3e-38 162.9 295 39.3
CANSAT64G2847 Cannabis sativa HOM05D004777 ORTHO05D006240 2.3e-38 162.9 280 39.3
Gorai.006G029700 Gossypium raimondii HOM05D004777 ORTHO05D006240 2.3e-38 162.9 280 37.9
Lalb_Chr06g0176061 Lupinus albus HOM05D004777 ORTHO05D006240 2.3e-38 162.9 280 40.0
Psat1g057880 Pisum sativum HOM05D004777 ORTHO05D006240 2.3e-38 162.9 280 40.4
FvH4_6g50590 Fragaria vesca HOM05D004777 ORTHO05D006240 3.0e-38 162.5 280 39.6
FAN05G4199 Fragaria x ananassa HOM05D004777 ORTHO05D006240 3.0e-38 162.5 280 39.6
FAN14G1693 Fragaria x ananassa HOM05D004777 ORTHO05D006240 3.0e-38 162.5 280 39.6
FAN14G5049 Fragaria x ananassa HOM05D004777 ORTHO05D006240 3.0e-38 162.5 280 39.6
Sopen02g031680 Solanum pennellii HOM05D004777 ORTHO05D006240 3.0e-38 162.5 280 38.9
AUR62043215 Chenopodium quinoa HOM05D004777 ORTHO05D006240 3.9e-38 162.2 280 37.9
Gohir.D09G025500 Gossypium hirsutum HOM05D004777 ORTHO05D006240 3.9e-38 162.2 280 37.9
Lju41A35T60 Lonicera japonica HOM05D004777 ORTHO05D006240 3.9e-38 162.2 280 38.9
Lalb_Chr21g0319421 Lupinus albus HOM05D004777 ORTHO05D006240 5.1e-38 161.8 280 39.6
Oeu043064.1 Olea europaea HOM05D004777 ORTHO05D006240 5.1e-38 161.8 280 40.0
SGA_v2.0_scaffold135G34858 Striga asiatica HOM05D004777 ORTHO05D006240 5.1e-38 161.8 280 39.3
Sed0004879 Sechium edule HOM05D004777 ORTHO05D006240 6.6e-38 161.4 280 40.0
Migut.H00126 Erythranthe guttata HOM05D004777 ORTHO05D006240 8.6e-38 161.0 280 38.6
Nitab4.5_0005176g0090 Nicotiana tabacum HOM05D004777 ORTHO05D006240 8.6e-38 161.0 280 38.9
Potri.017G072800 Populus trichocarpa HOM05D004777 ORTHO05D006240 8.6e-38 161.0 280 39.3
GSVIVG01032488001 Vitis vinifera HOM05D004777 ORTHO05D006240 8.6e-38 161.0 280 40.4
Ah.04g163480 Amaranthus hybridus HOM05D004777 ORTHO05D006240 1.1e-37 160.6 281 38.8
Hma1.2p1_0802F.1_g220410 Hydrangea macrophylla HOM05D004777 ORTHO05D006240 1.1e-37 160.6 280 40.0
AUR62035505 Chenopodium quinoa HOM05D004777 ORTHO05D006240 1.5e-37 160.2 280 38.9
ClCG10G014260 Citrullus lanatus HOM05D004777 ORTHO05D006240 1.5e-37 160.2 280 38.9
Glyma.19G009700 Glycine max HOM05D004777 ORTHO05D006240 1.5e-37 160.2 280 39.6
Nitab4.5_0003337g0100 Nicotiana tabacum HOM05D004777 ORTHO05D006240 1.5e-37 160.2 280 38.9
Cc07_g02330 Coffea canephora HOM05D004777 ORTHO05D006240 2.5e-37 159.5 280 37.5
TPR.G2322 Trifolium pratense HOM05D004777 ORTHO05D006240 2.5e-37 159.5 280 40.0
MSTRG.3173 Avicennia marina HOM05D004777 ORTHO05D006240 3.3e-37 159.1 280 38.9
COL.COLO4_28942 Corchorus olitorius HOM05D004777 ORTHO05D006240 3.3e-37 159.1 308 38.6
PSO017G2091 Papaver somniferum HOM05D004777 ORTHO05D006240 3.3e-37 159.1 280 38.6
C09p47230 Brassica napus HOM05D004777 ORTHO05D006240 7.3e-37 157.9 250 43.6
PSO478G4796 Papaver somniferum HOM05D004777 ORTHO05D006240 9.5e-37 157.5 280 38.2
Sabra17G0060200 Salix brachista HOM05D004777 ORTHO05D006240 9.5e-37 157.5 280 38.2
Gohir.A07G219400 Gossypium hirsutum HOM05D004777 ORTHO05D006240 6.2e-36 154.8 268 39.9
ATR0730G054 Amborella trichopoda HOM05D004777 ORTHO05D006240 8.1e-36 154.5 280 38.2
Thhalv10020775m.g Eutrema salsugineum HOM05D004777 ORTHO05D006240 1.1e-35 154.1 86 88.4
Hund02275 Selenicereus undatus HOM05D004777 ORTHO05D006240 1.1e-35 154.1 280 37.1
Ca_04203_v3 Cicer arietinum L. HOM05D004777 ORTHO05D006240 1.4e-35 153.7 298 38.3
Os08g0382400 Oryza sativa ssp. japonica HOM05D004777 ORTHO05D006240 1.8e-35 153.3 280 37.1
Aqoxy3G01003 Aquilegia oxysepala HOM05D004777 ORTHO05D006240 3.1e-35 152.5 280 37.5
EL10Ac4g08570 Beta vulgaris HOM05D004777 ORTHO05D006240 6.8e-35 151.4 280 37.1
BolC6t35260H Brassica oleracea HOM05D004777 ORTHO05D022002 6.8e-35 151.4 182 53.8
Zm00001eb042520 Zea mays HOM05D004777 ORTHO05D006240 8.9e-35 151.0 280 37.1
CDE02G3984 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 1.5e-34 150.2 280 36.4
MBI10_g11072_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 2.6e-34 149.4 289 38.4
unitig_21.g20495 Utricularia gibba HOM05D004777 ORTHO05D006240 2.7e-31 139.4 279 35.1
SEGI_33645 Sequoiadendron giganteum HOM05D004777 ORTHO05D006240 4.6e-31 138.7 280 36.8
Nn4g22807 Nelumbo nucifera HOM05D004777 ORTHO05D006240 6.6e-30 134.8 280 34.3
FAN14G3936 Fragaria x ananassa HOM05D004777 ORTHO05D006240 8.6e-30 134.4 280 36.4
Haze_14664 Corylus avellana HOM05D004777 ORTHO05D006240 4.3e-29 132.1 383 30.3
A02p21620 Brassica napus HOM05D004777 ORTHO05D006240 4.4e-26 122.1 83 80.7
A02p21700 Brassica napus HOM05D004777 ORTHO05D006240 4.4e-26 122.1 83 80.7
Sc16g0005400 Simmondsia chinensis HOM05D004777 ORTHO05D006240 4.4e-26 122.1 86 66.3
HPP92_019963 Vanilla planifolia HOM05D004777 ORTHO05D006240 1.7e-25 120.2 217 38.2
CBR_g37206 Chara braunii HOM05D004777 ORTHO05D006240 2.9e-25 119.4 284 31.3
SalBow1G4936 Salvia bowleyana HOM05D004777 ORTHO05D006240 4.9e-25 118.6 86 66.3
BolC3t20605H Brassica oleracea HOM05D004777 ORTHO05D022002 7.1e-24 114.8 165 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1753 Anthoceros agrestis HOM05D004777 ORTHO05D006240 1.6e-23 113.6 280 29.6
A02p21560 Brassica napus HOM05D004777 ORTHO05D006240 1.7e-22 110.2 139 53.2
Mapoly0001s0360 Marchantia polymorpha HOM05D004777 ORTHO05D006240 1.9e-21 106.7 280 30.7
Pp3c15_550 Physcomitrium patens HOM05D004777 ORTHO05D006240 1.9e-21 106.7 280 29.6
Pp3c9_660 Physcomitrium patens HOM05D004777 ORTHO05D006240 1.3e-20 104.0 280 29.3
BcaC09g47657 Brassica carinata HOM05D004777 ORTHO05D006240 4.9e-17 92.0 49 89.8
CAN.G206.34 Capsicum annuum HOM05D004777 ORTHO05D006240 3.2e-16 89.4 49 83.7
RcHm_v2.0_Chr2g0171371 Rosa chinensis HOM05D004777 ORTHO05D006240 4.2e-16 89.0 68 61.8
Pp3c26_630 Physcomitrium patens HOM05D004777 ORTHO05D006240 7.1e-16 88.2 280 26.1
RcHm_v2.0_Chr2g0171381 Rosa chinensis HOM05D004777 ORTHO05D006240 7.1e-16 88.2 49 81.6
RcHm_v2.0_Chr2g0171361 Rosa chinensis HOM05D004777 ORTHO05D006240 2.1e-15 86.7 67 61.2
HPP92_019953 Vanilla planifolia HOM05D004777 ORTHO05D006240 4.6e-15 85.5 51 78.4
HPP92_019954 Vanilla planifolia HOM05D004777 ORTHO05D006240 7.9e-15 84.7 68 58.8
Cre03.g189800 Chlamydomonas reinhardtii HOM05D004777 ORTHO05D006240 1.8e-14 83.6 279 27.6
BcaC01g04837 Brassica carinata HOM05D004777 ORTHO05D006240 3.9e-14 82.4 94 53.2
CDE06G2275 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 8.7e-14 81.3 67 55.2
SMO146G0026 Selaginella moellendorffii HOM05D004777 ORTHO05D006240 1.9e-13 80.1 85 51.8
BolC9t57579H Brassica oleracea HOM05D004777 ORTHO05D006240 7.4e-13 78.2 48 79.2
BcaC04g20152 Brassica carinata HOM05D004777 ORTHO05D006240 4.0e-11 72.4 46 80.4
A09p42100 Brassica napus HOM05D004777 ORTHO05D022002 9.0e-11 71.2 46 78.3
MCO01G434 Micromonas commoda HOM05D004777 ORTHO05D006240 9.9e-10 67.8 283 23.7
C07p00420 Brassica napus HOM05D004777 ORTHO05D022002 6.4e-09 65.1 125 39.2
BraA09t36714Z Brassica rapa HOM05D004777 ORTHO05D022002 1.9e-08 63.5 38 81.6
MBI02_g21155_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 4.2e-08 62.4 52 57.7
SEGI_25189 Sequoiadendron giganteum HOM05D004777 ORTHO05D006240 3.5e-07 59.3 67 46.3
PRCOL_00001222 Prasinoderma coloniale HOM05D004777 ORTHO05D006240 3.0e-06 56.2 50 50.0
CSS0037258 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D000072 6.7e-06 55.1 43 60.5


User provided reference genes

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