Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 6.9e-276 953.4 482 100.0
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 6.9e-244 847.0 488 89.5
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.4e-241 839.3 488 88.9
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 9.4e-241 836.6 488 89.1
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 2.1e-240 835.5 486 89.1
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 4.3e-238 827.8 486 88.7
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 7.7e-219 763.8 464 81.9
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 6.5e-210 734.2 462 79.2
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.4e-199 699.9 537 71.1
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 2.9e-194 682.2 435 80.0
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 3.8e-194 681.8 495 75.4
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 1.6e-192 676.4 490 75.9
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 8.0e-192 674.1 490 76.7
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 3.5e-187 658.7 495 74.5
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 1.9e-185 652.9 496 74.2
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 4.6e-179 631.7 461 74.6
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 6.0e-179 631.3 457 69.6
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.0e-158 563.1 479 64.7
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 9.9e-158 560.8 492 62.0
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 6.9e-135 485.0 331 77.0
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 2.7e-86 323.6 440 44.1
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 9.5e-84 315.1 425 46.8
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 1.2e-83 314.7 444 41.7
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.2e-83 314.7 483 40.2
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.1e-83 313.9 481 40.5
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 6.1e-83 312.4 303 53.8
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 6.8e-82 308.9 472 40.3
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 3.4e-81 306.6 431 42.2
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.4e-81 306.2 361 48.2
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 4.4e-81 306.2 448 42.0
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 5.7e-81 305.8 453 41.1
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 2.2e-80 303.9 446 40.8
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 2.8e-80 303.5 485 37.9
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 4.9e-80 302.8 430 42.1
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 6.3e-80 302.4 447 39.8
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 6.3e-80 302.4 475 40.0
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 7.0e-79 298.9 446 41.3
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 9.2e-79 298.5 430 40.9
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 2.7e-78 297.0 472 39.4
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 5.9e-78 295.8 441 39.7
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.3e-77 294.7 452 40.9
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 1.7e-77 294.3 485 39.6
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 3.9e-77 293.1 395 44.1
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 5.0e-77 292.7 459 40.1
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 6.6e-77 292.4 417 41.7
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 6.6e-77 292.4 367 45.2
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.5e-76 291.2 487 38.6
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 1.9e-76 290.8 437 39.8
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 2.5e-76 290.4 447 38.7
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 2.5e-76 290.4 365 43.8
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 7.3e-76 288.9 471 40.6
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 7.3e-76 288.9 386 41.7
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 7.3e-76 288.9 458 39.1
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.6e-75 287.7 374 41.4
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 2.8e-75 287.0 432 38.9
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 6.1e-75 285.8 390 41.0
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 6.1e-75 285.8 390 41.0
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 8.0e-75 285.4 390 40.5
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 1.0e-74 285.0 468 36.8
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.0e-74 285.0 444 40.1
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 4.0e-74 283.1 429 41.3
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 8.9e-74 282.0 428 38.8
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.2e-73 281.6 423 42.3
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 1.5e-73 281.2 432 38.7
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 2.0e-73 280.8 433 37.6
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.0e-73 280.8 441 39.0
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 2.0e-73 280.8 506 41.5
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 2.6e-73 280.4 372 42.7
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 5.8e-73 279.3 523 40.2
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 5.8e-73 279.3 453 38.4
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.5e-73 278.9 441 38.3
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 9.8e-73 278.5 481 38.5
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.3e-72 278.1 479 37.8
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 2.9e-72 276.9 454 38.5
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 4.9e-72 276.2 383 39.4
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 4.9e-72 276.2 389 41.6
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 6.4e-72 275.8 400 41.5
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 8.3e-72 275.4 463 39.7
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 4.1e-71 273.1 378 42.6
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 1.7e-69 267.7 478 36.6
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.9e-69 266.5 420 38.6
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.0e-69 266.2 487 37.8
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.1e-68 265.0 415 39.0
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 1.9e-68 264.2 447 39.1
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.3e-68 263.5 434 39.6
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 7.3e-68 262.3 359 43.7
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 9.5e-68 261.9 370 41.9
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 9.5e-68 261.9 444 38.7
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 3.6e-67 260.0 438 38.6
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 6.2e-67 259.2 454 37.4
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 1.1e-66 258.5 473 36.2
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.1e-66 258.5 439 38.3
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.4e-66 258.1 438 38.8
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 4.0e-66 256.5 414 40.8
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 4.0e-66 256.5 444 38.5
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 5.2e-66 256.1 431 37.8
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 5.2e-66 256.1 385 39.0
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 8.9e-66 255.4 345 41.7
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.4e-65 253.4 445 37.3
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 6.4e-64 249.2 419 39.4
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 9.2e-63 245.4 453 36.9
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 3.5e-62 243.4 388 39.4
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.3e-61 241.5 421 36.6
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 8.6e-61 238.8 301 45.2
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.6e-59 234.6 479 34.0
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 1.4e-58 231.5 479 34.7
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 3.1e-58 230.3 446 35.0
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 3.4e-57 226.9 414 37.4
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.7e-56 223.4 426 34.7
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 6.4e-56 222.6 305 43.3
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 2.4e-55 220.7 472 34.3
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 1.7e-53 214.5 292 41.1
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 3.9e-53 213.4 306 41.2
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 5.1e-53 213.0 249 49.4
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 3.3e-52 210.3 492 31.9
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 9.6e-52 208.8 332 41.0
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 8.1e-51 205.7 414 35.0
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 4.0e-50 203.4 503 30.8
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.6e-46 189.9 325 38.5
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 2.3e-45 187.6 300 39.0
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 3.9e-45 186.8 348 35.1
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 5.1e-45 186.4 490 30.6
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 1.1e-44 185.3 134 70.1
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 9.6e-44 182.2 508 34.1
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 8.1e-43 179.1 170 54.1
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 6.9e-42 176.0 479 30.1
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 6.9e-42 176.0 290 38.3
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.4e-41 173.3 349 35.8
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 9.9e-41 172.2 233 39.5
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 9.9e-41 172.2 339 34.2
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.3e-40 171.8 323 34.7
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 8.4e-40 169.1 459 31.8
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 7.1e-39 166.0 310 36.1
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 2.7e-38 164.1 232 42.7
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.9e-38 162.5 295 33.9
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 2.5e-36 157.5 380 32.4
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 2.8e-35 154.1 500 28.2
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 2.2e-32 144.4 144 50.7
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 2.9e-32 144.1 141 49.6
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.4e-31 141.0 382 30.9
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 4.2e-31 140.2 188 44.1
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 7.1e-31 139.4 216 38.0
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 9.3e-31 139.0 299 33.4
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.1e-28 132.1 387 28.4
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 1.1e-28 132.1 154 42.9
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 4.3e-28 130.2 232 37.9
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.0e-26 123.6 241 36.9
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 9.0e-26 122.5 149 39.6
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 2.2e-24 117.9 100 54.0
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 7.9e-22 109.4 100 57.0
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 6.7e-21 106.3 136 40.4
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.6e-20 102.4 380 27.6
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 6.2e-19 99.8 217 31.8
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 2.4e-18 97.8 280 30.4
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.6e-17 94.4 185 30.3
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 7.6e-17 92.8 455 25.7
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-15 89.0 106 42.5
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-15 89.0 106 42.5
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 6.1e-14 83.2 113 41.6
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.3e-12 77.4 190 32.1
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 2.2e-11 74.7 95 42.1
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 2.0e-09 68.2 152 32.2
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 1.0e-08 65.9 72 48.6
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.0e-08 65.9 173 31.8
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 3.6e-06 57.4 134 32.1
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 7.9e-06 56.2 57 42.1


User provided reference genes

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