Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35966 Brassica carinata HOM05D002795 ORTHO05D003219 1.4e-37 159.1 76 100.0
THA.LOC104811639 Tarenaya hassleriana HOM05D002795 ORTHO05D003219 5.8e-12 73.9 47 66.0
CARHR268670 Cardamine hirsuta HOM05D002795 ORTHO05D003219 1.3e-11 72.8 46 63.0
Eucgr.C00402 Eucalyptus grandis HOM05D002795 ORTHO05D003219 1.3e-11 72.8 47 63.8
PSO210G3652 Papaver somniferum HOM05D002795 ORTHO05D003219 1.3e-11 72.8 73 49.3
PSO302G0116 Papaver somniferum HOM05D002795 ORTHO05D003219 1.3e-11 72.8 73 49.3
ClCG10G004900 Citrullus lanatus HOM05D002795 ORTHO05D003219 2.2e-11 72.0 65 50.8
MELO3C014153.2 Cucumis melo HOM05D002795 ORTHO05D003219 2.2e-11 72.0 65 50.8
CsaV3_3G004550 Cucumis sativus L. HOM05D002795 ORTHO05D003219 2.2e-11 72.0 65 50.8
Nn6g32024 Nelumbo nucifera HOM05D002795 ORTHO05D003219 2.2e-11 72.0 64 53.1
Sp6g17220 Schrenkiella parvula HOM05D002795 ORTHO05D003219 2.2e-11 72.0 67 50.7
COL.COLO4_09748 Corchorus olitorius HOM05D002795 ORTHO05D003219 2.9e-11 71.6 47 63.8
Thhalv10012622m.g Eutrema salsugineum HOM05D002795 ORTHO05D003219 2.9e-11 71.6 81 44.4
Sp6g17230 Schrenkiella parvula HOM05D002795 ORTHO05D003219 2.9e-11 71.6 47 63.8
TPR.G9831 Trifolium pratense HOM05D002795 ORTHO05D003219 2.9e-11 71.6 47 61.7
CANSAT01G2851 Cannabis sativa HOM05D002795 ORTHO05D003219 3.8e-11 71.2 68 50.0
CARHR234320 Cardamine hirsuta HOM05D002795 ORTHO05D003219 3.8e-11 71.2 47 63.8
CiPaw.11G196000 Carya illinoinensis HOM05D002795 ORTHO05D003219 3.8e-11 71.2 65 50.8
Prupe.1G146000 Prunus persica HOM05D002795 ORTHO05D003219 3.8e-11 71.2 81 43.2
FvH4_4g16730 Fragaria vesca HOM05D002795 ORTHO05D003219 4.9e-11 70.9 47 61.7
FAN07G2479 Fragaria x ananassa HOM05D002795 ORTHO05D003219 4.9e-11 70.9 47 61.7
FAN12G3271 Fragaria x ananassa HOM05D002795 ORTHO05D003219 4.9e-11 70.9 47 61.7
FAN12G3602 Fragaria x ananassa HOM05D002795 ORTHO05D003219 4.9e-11 70.9 47 61.7
FAN17G1079 Fragaria x ananassa HOM05D002795 ORTHO05D003219 4.9e-11 70.9 47 61.7
FAN22G1485 Fragaria x ananassa HOM05D002795 ORTHO05D003219 4.9e-11 70.9 47 61.7
Pp3c13_14620 Physcomitrium patens HOM05D002795 ORTHO05D003219 4.9e-11 70.9 47 61.7
TAR627G0024 Trochodendron aralioides HOM05D002795 ORTHO05D003219 4.9e-11 70.9 65 49.2
BcaC04g20251 Brassica carinata HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
A10p12550 Brassica napus HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
C09p45690 Brassica napus HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
BolC9t57457H Brassica oleracea HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
BraA10t43348Z Brassica rapa HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
Duzib213G0778 Durio zibethinus HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
Duzib268G1883 Durio zibethinus HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
Gohir.A04G011200 Gossypium hirsutum HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
Gohir.A11G277900 Gossypium hirsutum HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
Gohir.D05G377000 Gossypium hirsutum HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
Gohir.D11G288000 Gossypium hirsutum HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
Gorai.007G311800 Gossypium raimondii HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
Gorai.009G444700 Gossypium raimondii HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
Lalb_Chr01g0020751 Lupinus albus HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
Sed0024196 Sechium edule HOM05D002795 ORTHO05D003219 6.4e-11 70.5 65 49.2
THA.LOC104817691 Tarenaya hassleriana HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
Thecc.07G025700 Theobroma cacao HOM05D002795 ORTHO05D003219 6.4e-11 70.5 47 61.7
HPP92_027719 Vanilla planifolia HOM05D002795 ORTHO05D003219 6.4e-11 70.5 76 47.4
Aqoxy7G00643 Aquilegia oxysepala HOM05D002795 ORTHO05D003219 8.4e-11 70.1 65 50.8
AL8G30850 Arabidopsis lyrata HOM05D002795 ORTHO05D003219 8.4e-11 70.1 46 60.9
AT5G55310 Arabidopsis thaliana HOM05D002795 ORTHO05D003219 8.4e-11 70.1 46 60.9
Carub.0008s1565 Capsella rubella HOM05D002795 ORTHO05D003219 8.4e-11 70.1 46 60.9
Lalb_Chr01g0000731 Lupinus albus HOM05D002795 ORTHO05D003219 8.4e-11 70.1 65 49.2
Mapoly0167s0020 Marchantia polymorpha HOM05D002795 ORTHO05D003219 8.4e-11 70.1 47 57.4
Medtr1g040355 Medicago truncatula HOM05D002795 ORTHO05D003219 8.4e-11 70.1 69 47.8
Os08g0154600 Oryza sativa ssp. japonica HOM05D002795 ORTHO05D003219 8.4e-11 70.1 76 47.4
QL08p008078 Quercus lobata HOM05D002795 ORTHO05D003219 8.4e-11 70.1 60 53.3
TPR.G25818 Trifolium pratense HOM05D002795 ORTHO05D003219 8.4e-11 70.1 47 61.7
CARHR204420 Cardamine hirsuta HOM05D002795 ORTHO05D003219 1.1e-10 69.7 67 49.3
Ca_07011_v3 Cicer arietinum L. HOM05D002795 ORTHO05D003219 1.1e-10 69.7 65 49.2
Ciclev10007398m.g Citrus clementina HOM05D002795 ORTHO05D003219 1.1e-10 69.7 65 49.2
Thhalv10012607m.g Eutrema salsugineum HOM05D002795 ORTHO05D003219 1.1e-10 69.7 76 43.4
Glyma.09G223300 Glycine max HOM05D002795 ORTHO05D003219 1.1e-10 69.7 65 49.2
Glyma.12G013600 Glycine max HOM05D002795 ORTHO05D003219 1.1e-10 69.7 65 49.2
Lj3g0005033 Lotus japonicus HOM05D002795 ORTHO05D003219 1.1e-10 69.7 65 49.2
Phvul.011G016600 Phaseolus vulgaris HOM05D002795 ORTHO05D003219 1.1e-10 69.7 65 49.2
Psat3g192280 Pisum sativum HOM05D002795 ORTHO05D003219 1.1e-10 69.7 65 49.2
VMungo1127G1855 Vigna mungo HOM05D002795 ORTHO05D003219 1.1e-10 69.7 65 49.2
Actinidia10756 Actinidia chinensis HOM05D002795 ORTHO05D003219 1.4e-10 69.3 47 61.7
Ca_19619_v3 Cicer arietinum L. HOM05D002795 ORTHO05D003219 1.4e-10 69.3 65 49.2
MBI16_g41930_MAGBIO Magnolia biondii HOM05D002795 ORTHO05D003219 1.4e-10 69.3 47 61.7
PSO017G1924 Papaver somniferum HOM05D002795 ORTHO05D003219 1.4e-10 69.3 70 48.6
PSO017G5207 Papaver somniferum HOM05D002795 ORTHO05D003219 1.4e-10 69.3 70 48.6
PSO017G5532 Papaver somniferum HOM05D002795 ORTHO05D003219 1.4e-10 69.3 70 48.6
Pp3c3_12300 Physcomitrium patens HOM05D002795 ORTHO05D003219 1.4e-10 69.3 79 43.0
Prupe.8G003200 Prunus persica HOM05D002795 ORTHO05D003219 1.4e-10 69.3 47 59.6
Sp7g24680 Schrenkiella parvula HOM05D002795 ORTHO05D003219 1.4e-10 69.3 47 59.6
Sed0013923 Sechium edule HOM05D002795 ORTHO05D003219 1.4e-10 69.3 47 59.6
vmacro09681 Vaccinium macrocarpon HOM05D002795 ORTHO05D003219 1.4e-10 69.3 64 50.0
Aa31LG3G11270 Aethionema arabicum HOM05D002795 ORTHO05D003219 1.9e-10 68.9 76 44.7
Cpa.g.sc12.228 Carica papaya HOM05D002795 ORTHO05D003219 1.9e-10 68.9 47 59.6
Duzib170G0878 Durio zibethinus HOM05D002795 ORTHO05D003219 1.9e-10 68.9 47 59.6
Lalb_Chr03g0024291 Lupinus albus HOM05D002795 ORTHO05D003219 1.9e-10 68.9 65 47.7
MBI16_g09247_MAGBIO Magnolia biondii HOM05D002795 ORTHO05D003219 1.9e-10 68.9 67 47.8
Potri.011G092700 Populus trichocarpa HOM05D002795 ORTHO05D003219 1.9e-10 68.9 79 44.3
RcHm_v2.0_Chr4g0420301 Rosa chinensis HOM05D002795 ORTHO05D003219 1.9e-10 68.9 47 59.6
Sabra11G0086900 Salix brachista HOM05D002795 ORTHO05D003219 1.9e-10 68.9 79 44.3
Carub.0007s1414 Capsella rubella HOM05D002795 ORTHO05D003219 2.4e-10 68.6 81 40.7
Cfa020264 Carpinus fangiana HOM05D002795 ORTHO05D003219 2.4e-10 68.6 65 47.7
Haze_09756 Corylus avellana HOM05D002795 ORTHO05D003219 2.4e-10 68.6 65 47.7
Manes.03G135240 Manihot esculenta HOM05D002795 ORTHO05D003219 2.4e-10 68.6 79 44.3
Manes.03G135300 Manihot esculenta HOM05D002795 ORTHO05D003219 2.4e-10 68.6 79 44.3
Manes.15G065000 Manihot esculenta HOM05D002795 ORTHO05D003219 2.4e-10 68.6 79 44.3
Psat6g102320 Pisum sativum HOM05D002795 ORTHO05D003219 2.4e-10 68.6 65 47.7
TAR629G2970 Trochodendron aralioides HOM05D002795 ORTHO05D003219 2.4e-10 68.6 78 44.9
arahy.Tifrunner.gnm1.ann1.7PDB7U Arachis hypogaea HOM05D002795 ORTHO05D003219 3.2e-10 68.2 65 47.7
Carub.0008s1563 Capsella rubella HOM05D002795 ORTHO05D003219 3.2e-10 68.2 75 41.3
CiPaw.12G134500 Carya illinoinensis HOM05D002795 ORTHO05D003219 3.2e-10 68.2 65 49.2
Dinv39534 Davidia involucrata HOM05D002795 ORTHO05D003219 3.2e-10 68.2 47 59.6
Medtr0172s0010 Medicago truncatula HOM05D002795 ORTHO05D003219 3.2e-10 68.2 65 47.7
PGR083G1761 Punica granatum HOM05D002795 ORTHO05D003219 3.2e-10 68.2 47 57.4
SMO119G0329 Selaginella moellendorffii HOM05D002795 ORTHO05D003219 3.2e-10 68.2 46 58.7
SGA_v2.0_scaffold10G05160 Striga asiatica HOM05D002795 ORTHO05D003219 3.2e-10 68.2 73 49.3
Zm00001eb172650 Zea mays HOM05D002795 ORTHO05D003219 3.2e-10 68.2 67 46.3
AL8G30840 Arabidopsis lyrata HOM05D002795 ORTHO05D003219 4.1e-10 67.8 75 41.3
PSO493G0011 Papaver somniferum HOM05D002795 ORTHO05D003219 4.1e-10 67.8 72 47.2
Peaxi162Scf00007g00126 Petunia axillaris HOM05D002795 ORTHO05D003219 4.1e-10 67.8 65 47.7
SalBow6G3031 Salvia bowleyana HOM05D002795 ORTHO05D003219 4.1e-10 67.8 47 59.6
TWI38G1047 Tripterygium wilfordii HOM05D002795 ORTHO05D003219 4.1e-10 67.8 47 57.4
GSVIVG01020301001 Vitis vinifera HOM05D002795 ORTHO05D003219 4.1e-10 67.8 47 59.6
MD13G1176900 Malus domestica HOM05D002795 ORTHO05D003219 5.4e-10 67.4 47 57.4
Sc03g0008200 Simmondsia chinensis HOM05D002795 ORTHO05D003219 5.4e-10 67.4 47 61.7
TPR.G22485 Trifolium pratense HOM05D002795 ORTHO05D003219 5.4e-10 67.4 81 40.7
AT4G26701 Arabidopsis thaliana HOM05D002795 ORTHO05D003219 7.1e-10 67.0 47 61.7
BcaC03g14247 Brassica carinata HOM05D002795 ORTHO05D003219 7.1e-10 67.0 78 43.6
CSS0036752 Camellia sinensis var. sinensis HOM05D002795 ORTHO05D003219 7.1e-10 67.0 47 59.6
CDE02G4180 Ceratophyllum demersum HOM05D002795 ORTHO05D003219 7.1e-10 67.0 79 43.0
CDE06G1370 Ceratophyllum demersum HOM05D002795 ORTHO05D003219 7.1e-10 67.0 79 43.0
Cc05_g14440 Coffea canephora HOM05D002795 ORTHO05D003219 7.1e-10 67.0 47 57.4
Dinv14748 Davidia involucrata HOM05D002795 ORTHO05D003219 7.1e-10 67.0 47 57.4
Lju470A12T60 Lonicera japonica HOM05D002795 ORTHO05D003219 7.1e-10 67.0 47 57.4
MD16G1178600 Malus domestica HOM05D002795 ORTHO05D003219 7.1e-10 67.0 47 57.4
Potri.001G359700 Populus trichocarpa HOM05D002795 ORTHO05D003219 7.1e-10 67.0 79 41.8
GSVIVG01030405001 Vitis vinifera HOM05D002795 ORTHO05D003219 7.1e-10 67.0 65 49.2
CAN.G290.6 Capsicum annuum HOM05D002795 ORTHO05D003219 9.2e-10 66.6 47 57.4
HanXRQChr01g0004231 Helianthus annuus HOM05D002795 ORTHO05D003219 9.2e-10 66.6 73 43.8
Nitab4.5_0000130g0250 Nicotiana tabacum HOM05D002795 ORTHO05D003219 9.2e-10 66.6 65 46.2
Nitab4.5_0006248g0050 Nicotiana tabacum HOM05D002795 ORTHO05D003219 9.2e-10 66.6 76 43.4
Oeu013109.1 Olea europaea HOM05D002795 ORTHO05D003219 9.2e-10 66.6 47 57.4
Oeu054314.1 Olea europaea HOM05D002795 ORTHO05D003219 9.2e-10 66.6 47 57.4
Sabra16G0237400 Salix brachista HOM05D002795 ORTHO05D003219 9.2e-10 66.6 79 41.8
Sopen07g025320 Solanum pennellii HOM05D002795 ORTHO05D003219 9.2e-10 66.6 47 57.4
PGSC0003DMG400001083 Solanum tuberosum HOM05D002795 ORTHO05D003219 9.2e-10 66.6 65 46.2
Actinidia00112 Actinidia chinensis HOM05D002795 ORTHO05D003219 1.2e-09 66.2 47 57.4
AT5G55300 Arabidopsis thaliana HOM05D002795 ORTHO05D003219 1.2e-09 66.2 75 40.0
A02p09750 Brassica napus HOM05D002795 ORTHO05D003219 1.2e-09 66.2 78 43.6
C02p16280 Brassica napus HOM05D002795 ORTHO05D003219 1.2e-09 66.2 78 43.6
BolC2t07729H Brassica oleracea HOM05D002795 ORTHO05D003219 1.2e-09 66.2 78 43.6
BraA02t06039Z Brassica rapa HOM05D002795 ORTHO05D003219 1.2e-09 66.2 78 43.6
CSS0043408 Camellia sinensis var. sinensis HOM05D002795 ORTHO05D003219 1.2e-09 66.2 47 55.3
CBR_g39191 Chara braunii HOM05D002795 ORTHO05D003219 1.2e-09 66.2 79 40.5
ECA248G0666 Erigeron canadensis HOM05D002795 ORTHO05D003219 1.2e-09 66.2 47 57.4
Lsat_1_v5_gn_1_128740 Lactuca sativa HOM05D002795 ORTHO05D003219 1.2e-09 66.2 47 55.3
BcaB05g22198 Brassica carinata HOM05D002795 ORTHO05D003219 1.6e-09 65.9 78 43.6
Migut.K00523 Erythranthe guttata HOM05D002795 ORTHO05D003219 1.6e-09 65.9 47 55.3
PSO675G6239 Papaver somniferum HOM05D002795 ORTHO05D003219 1.6e-09 65.9 76 42.1
SMO116G0172 Selaginella moellendorffii HOM05D002795 ORTHO05D003219 1.6e-09 65.9 46 56.5
TWI39G0959 Tripterygium wilfordii HOM05D002795 ORTHO05D003219 1.6e-09 65.9 76 40.8
DCAR_008813 Daucus carota HOM05D002795 ORTHO05D003219 2.1e-09 65.5 47 55.3
RcHm_v2.0_Chr6g0301891 Rosa chinensis HOM05D002795 ORTHO05D003219 2.7e-09 65.1 67 43.3
unitig_750.g28473 Utricularia gibba HOM05D002795 ORTHO05D003219 2.7e-09 65.1 79 40.5
Hund23181 Selenicereus undatus HOM05D002795 ORTHO05D003219 3.5e-09 64.7 73 46.6
MSTRG.19560 Avicennia marina HOM05D002795 ORTHO05D003219 4.6e-09 64.3 47 55.3
BcaC09g52258 Brassica carinata HOM05D002795 ORTHO05D003219 6.0e-09 63.9 75 44.0
Cre03.g178600 Chlamydomonas reinhardtii HOM05D002795 ORTHO05D003219 6.0e-09 63.9 79 43.0
FAN15G3533 Fragaria x ananassa HOM05D002795 ORTHO05D003219 6.0e-09 63.9 68 41.2
Hund01943 Selenicereus undatus HOM05D002795 ORTHO05D003219 6.0e-09 63.9 47 55.3
SGA_v2.0_scaffold62G21555 Striga asiatica HOM05D002795 ORTHO05D003219 6.0e-09 63.9 65 44.6
EL10Ac4g07649 Beta vulgaris HOM05D002795 ORTHO05D003219 7.8e-09 63.5 69 44.9
ECA234G4481 Erigeron canadensis HOM05D002795 ORTHO05D003219 7.8e-09 63.5 74 41.9
BolC1t02208H Brassica oleracea HOM05D002795 ORTHO05D003219 1.0e-08 63.2 78 39.7
SMO165G0086 Selaginella moellendorffii HOM05D002795 ORTHO05D003219 1.0e-08 63.2 75 44.0
BraA01t01751Z Brassica rapa HOM05D001236 ORTHO05D001090 1.3e-08 62.8 78 39.7
HanXRQChr16g0515981 Helianthus annuus HOM05D002795 ORTHO05D003219 1.3e-08 62.8 72 44.4
RcHm_v2.0_Chr4g0420291 Rosa chinensis HOM05D002795 ORTHO05D003219 1.7e-08 62.4 42 57.1
Ah.06g181790 Amaranthus hybridus HOM05D002795 ORTHO05D003219 3.0e-08 61.6 69 42.0
DCAR_025937 Daucus carota HOM05D002795 ORTHO05D003219 3.9e-08 61.2 56 50.0
RcHm_v2.0_Chr4g0421651 Rosa chinensis HOM05D002795 ORTHO05D003219 3.9e-08 61.2 49 53.1
CSS0034132 Camellia sinensis var. sinensis HOM05D002795 ORTHO05D003219 6.6e-08 60.5 47 57.4
FvH4_2g39170 Fragaria vesca HOM05D002795 ORTHO05D003219 6.6e-08 60.5 68 38.2
FAN20G1414 Fragaria x ananassa HOM05D002795 ORTHO05D003219 6.6e-08 60.5 68 38.2
PRCOL_00004710 Prasinoderma coloniale HOM05D002795 ORTHO05D003219 1.1e-07 59.7 66 40.9
TPR.G38130 Trifolium pratense HOM05D002795 ORTHO05D003219 3.3e-07 58.2 82 36.6
FAN09G2054 Fragaria x ananassa HOM05D002795 ORTHO05D003219 1.2e-06 56.2 43 53.5
MCO01G719 Micromonas commoda HOM05D002795 ORTHO05D003219 1.2e-06 56.2 76 36.8
vmacro11579 Vaccinium macrocarpon HOM05D002795 ORTHO05D003219 3.6e-06 54.7 79 35.4
vmacro22991 Vaccinium macrocarpon HOM05D002795 ORTHO05D003219 3.6e-06 54.7 79 35.4


User provided reference genes

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