Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 2.9e-168 595.1 293 100.0
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 2.9e-152 542.0 293 92.8
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 6.4e-152 540.8 293 92.5
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 5.5e-151 537.7 293 92.2
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 7.1e-151 537.3 293 92.2
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 7.1e-151 537.3 293 92.2
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.2e-142 510.0 293 86.3
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 5.9e-137 491.1 297 83.2
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 5.5e-135 484.6 296 81.8
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 6.1e-134 481.1 296 82.1
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 1.0e-133 480.3 296 84.1
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 8.8e-133 477.2 296 82.8
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 2.4e-130 469.2 296 79.4
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 1.1e-122 443.7 294 75.2
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 9.8e-100 367.5 295 63.4
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 6.3e-99 364.8 296 63.2
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 1.8e-98 363.2 295 62.7
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 2.4e-98 362.8 294 63.9
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 3.5e-97 359.0 295 62.4
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.7e-96 356.7 296 62.2
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 3.8e-96 355.5 296 63.5
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.8e-96 355.5 296 62.2
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.0e-96 355.1 299 63.5
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 1.1e-95 354.0 297 62.0
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 7.2e-95 351.3 293 61.4
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.2e-94 350.5 297 60.9
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 8.0e-94 347.8 295 60.7
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.0e-93 345.9 296 60.8
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 4.0e-93 345.5 294 60.2
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 5.7e-92 341.7 296 59.5
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 7.5e-92 341.3 294 59.9
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.2e-91 339.7 295 60.7
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 2.2e-91 339.7 292 59.9
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 6.3e-91 338.2 297 58.9
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 1.1e-90 337.4 292 58.6
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.8e-90 336.7 296 61.8
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 5.4e-90 335.1 294 60.2
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.2e-89 334.0 292 58.2
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 3.5e-89 332.4 294 59.2
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 3.5e-89 332.4 294 59.9
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 3.5e-89 332.4 296 59.5
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 7.8e-89 331.3 297 57.6
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 7.8e-89 331.3 297 57.6
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.1e-87 327.4 237 66.7
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 2.5e-87 326.2 292 58.6
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 2.5e-87 326.2 294 59.2
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 4.3e-87 325.5 288 57.3
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 7.3e-87 324.7 292 57.2
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 2.8e-86 322.8 278 61.5
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 4.7e-86 322.0 298 57.0
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 4.7e-86 322.0 298 57.0
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 6.1e-86 321.6 295 54.6
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 6.1e-86 321.6 295 59.3
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 8.0e-86 321.2 282 61.0
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 8.0e-86 321.2 293 58.7
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 1.4e-85 320.5 293 57.3
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 1.4e-85 320.5 288 56.9
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.8e-85 320.1 292 57.2
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.8e-85 320.1 293 58.7
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 5.2e-85 318.5 323 53.6
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 6.8e-85 318.2 311 54.7
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 6.8e-85 318.2 279 60.2
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.2e-84 317.4 290 56.2
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 2.0e-84 316.6 292 56.2
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 2.6e-84 316.2 351 52.1
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 4.4e-84 315.5 259 62.9
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 7.5e-84 314.7 291 59.1
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 9.8e-84 314.3 283 58.3
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.7e-83 313.5 295 55.3
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.2e-83 313.2 259 61.4
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.7e-83 312.4 256 61.7
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 6.4e-83 311.6 299 57.2
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 6.4e-83 311.6 294 55.1
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 2.4e-82 309.7 295 57.3
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 2.4e-82 309.7 294 56.1
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 3.2e-82 309.3 294 54.4
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 1.2e-81 307.4 311 52.4
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 1.6e-81 307.0 336 50.9
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 4.6e-81 305.4 290 57.6
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 1.0e-80 304.3 281 58.0
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 1.0e-80 304.3 242 61.2
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 1.3e-80 303.9 323 52.0
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.3e-80 303.9 296 56.4
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.9e-80 302.4 276 56.2
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 6.6e-80 301.6 271 56.8
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 6.6e-80 301.6 294 54.8
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 8.6e-80 301.2 300 55.3
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.1e-79 300.8 283 58.3
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 2.5e-79 299.7 294 53.7
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 7.3e-79 298.1 296 55.1
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 5.2e-77 292.0 294 53.4
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 2.6e-76 289.7 294 53.4
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 5.8e-76 288.5 256 58.2
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 7.5e-76 288.1 291 53.6
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.3e-75 287.3 209 67.5
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 8.3e-75 284.6 239 58.2
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.1e-74 284.3 214 66.8
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 3.2e-74 282.7 229 63.3
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 4.1e-74 282.3 292 51.4
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 9.2e-74 281.2 277 54.9
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 3.5e-73 279.3 208 65.9
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 6.6e-72 275.0 299 51.5
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.5e-71 273.9 226 61.5
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 3.3e-71 272.7 285 50.5
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.1e-70 270.0 227 60.8
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.1e-66 257.7 260 54.2
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 2.1e-65 253.4 275 52.0
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 3.8e-59 232.6 282 47.2
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 1.0e-56 224.6 190 56.8
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 1.6e-54 217.2 205 55.1
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.1e-50 204.5 231 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 1.9e-50 203.8 256 44.5
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.2e-49 201.1 162 60.5
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 1.6e-49 200.7 300 38.7
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 7.8e-49 198.4 220 50.5
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 2.3e-48 196.8 234 50.0
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.5e-47 194.1 205 54.1
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.9e-47 193.7 287 41.1
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 7.3e-47 191.8 221 48.0
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.8e-46 189.1 178 56.2
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-45 188.0 148 63.5
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 2.6e-44 183.3 271 43.2
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 2.9e-43 179.9 244 44.7
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 3.8e-43 179.5 131 64.9
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 1.4e-42 177.6 123 68.3
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 2.0e-36 157.1 116 65.5
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.6e-36 156.8 295 38.3
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 5.8e-36 155.6 205 45.9
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.4e-34 151.0 105 67.6
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 9.3e-34 148.3 170 49.4
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 5.1e-32 142.5 301 34.6
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 5.0e-27 125.9 87 70.1
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.0e-24 118.2 141 50.4
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 3.3e-23 113.2 200 39.5
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 7.4e-23 112.1 218 36.2
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 2.5e-18 97.1 173 39.9
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 3.9e-16 89.7 190 31.1
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 6.9e-13 79.0 216 27.8
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.4e-10 71.2 137 37.2
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 5.1e-08 62.8 113 37.2


User provided reference genes

Program Settings