Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 2.7e-202 708.4 342 100.0
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 7.4e-200 700.3 343 99.1
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 2.2e-199 698.7 343 98.8
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 2.2e-199 698.7 343 98.8
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 6.3e-199 697.2 343 98.8
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 6.3e-199 697.2 343 98.8
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 3.9e-193 677.9 342 94.4
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 2.8e-191 671.8 342 94.2
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 1.1e-190 669.8 343 94.8
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 7.0e-190 667.2 342 93.6
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 2.6e-189 665.2 341 93.3
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.8e-182 642.5 353 87.3
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 1.1e-171 606.7 341 83.3
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 5.7e-160 567.8 340 77.6
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 2.7e-157 558.9 343 77.8
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.7e-156 556.2 342 77.2
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.1e-155 553.5 340 76.5
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.1e-155 553.5 340 76.2
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 2.8e-154 548.9 340 77.4
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.8e-153 546.2 338 75.1
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 6.8e-153 544.3 344 76.2
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 6.8e-153 544.3 340 75.6
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 2.0e-152 542.7 309 80.6
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.4e-152 541.6 340 75.0
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 7.5e-152 540.8 340 75.0
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 9.8e-152 540.4 338 75.1
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.7e-151 539.7 322 77.3
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.2e-151 539.3 342 73.7
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.1e-150 537.0 335 74.0
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.1e-150 537.0 339 74.3
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 1.9e-150 536.2 345 74.5
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 4.1e-150 535.0 330 74.5
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.1e-150 535.0 345 73.3
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 5.4e-150 534.6 338 75.1
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 9.2e-150 533.9 340 74.1
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.2e-149 533.5 342 73.7
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 1.3e-148 530.0 322 76.7
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.7e-148 529.6 340 73.8
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 2.3e-148 529.3 340 72.9
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 3.0e-148 528.9 341 73.9
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 3.9e-148 528.5 309 79.9
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 5.0e-148 528.1 340 73.5
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 1.9e-147 526.2 330 73.6
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 2.5e-147 525.8 340 71.2
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 2.5e-147 525.8 347 72.3
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 3.3e-147 525.4 339 72.3
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.2e-146 523.5 340 71.5
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.2e-146 523.5 338 72.8
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.1e-146 522.7 338 74.0
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 4.7e-146 521.5 332 72.6
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.1e-145 518.8 330 73.0
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.0e-145 518.5 330 72.7
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 8.9e-145 517.3 338 73.4
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.2e-144 516.9 343 71.7
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.5e-144 516.5 339 71.4
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 1.5e-144 516.5 331 71.9
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 2.6e-144 515.8 340 71.2
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 3.4e-144 515.4 330 72.4
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 5.8e-144 514.6 340 72.4
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 5.8e-144 514.6 340 72.1
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 7.5e-144 514.2 343 70.8
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 7.5e-144 514.2 347 71.8
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 9.9e-144 513.8 340 72.1
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.3e-143 513.5 339 70.5
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.7e-143 513.1 325 75.1
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.7e-143 513.1 340 73.5
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.7e-143 513.1 346 69.9
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.7e-143 513.1 340 71.8
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 2.9e-143 512.3 344 71.5
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 2.9e-143 512.3 351 70.1
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 6.4e-143 511.1 338 71.3
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 8.3e-143 510.8 330 72.4
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.1e-142 510.4 330 72.4
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.6e-141 506.5 308 75.0
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 2.1e-141 506.1 338 71.0
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 2.7e-141 505.8 328 71.6
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.7e-141 505.8 334 70.1
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 3.5e-141 505.4 334 70.1
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 7.8e-141 504.2 341 70.4
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.7e-140 503.1 340 69.1
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.1e-139 500.4 310 73.9
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.3e-139 498.8 338 70.1
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 7.3e-139 497.7 338 70.7
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 9.5e-139 497.3 338 70.1
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.2e-138 496.9 340 70.3
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 6.2e-138 494.6 309 73.8
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.2e-136 490.3 387 62.3
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 9.9e-136 487.3 318 71.4
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 9.9e-136 487.3 323 69.3
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 2.2e-135 486.1 337 67.7
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 3.8e-135 485.3 323 71.8
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.1e-134 483.8 337 67.7
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.6e-133 479.9 304 74.3
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.6e-133 479.9 325 70.5
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 2.3e-132 476.1 340 65.0
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.6e-132 474.6 340 66.5
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 8.6e-132 474.2 340 65.3
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 7.3e-131 471.1 340 66.8
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 3.1e-129 465.7 317 69.4
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 5.2e-129 464.9 300 71.3
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.9e-129 464.5 320 70.6
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 9.0e-129 464.2 339 67.0
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.2e-128 463.8 319 71.2
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.2e-127 459.5 334 67.1
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 3.8e-127 458.8 344 64.2
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.4e-126 456.8 362 61.9
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 9.3e-126 454.1 340 63.5
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 2.7e-125 452.6 353 63.7
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.9e-124 448.7 307 67.4
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 6.6e-124 448.0 338 63.3
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 9.6e-123 444.1 266 78.2
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.8e-121 439.9 319 65.5
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 6.9e-121 438.0 341 61.0
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 9.0e-121 437.6 323 63.8
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.5e-120 436.8 340 62.6
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 3.4e-120 435.6 264 76.9
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 5.8e-120 434.9 224 92.9
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.2e-117 427.2 316 62.3
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.1e-117 426.4 284 68.3
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.1e-115 420.6 290 68.6
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 7.4e-115 417.9 246 80.5
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.8e-113 413.3 316 62.3
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.1e-113 412.5 309 63.8
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 8.7e-108 394.4 288 64.6
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 3.3e-107 392.5 314 59.9
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.6e-98 363.6 406 48.3
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 4.6e-93 345.5 306 58.5
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.2e-88 330.9 237 64.1
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.4e-86 323.9 260 60.8
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 3.2e-86 322.8 243 62.6
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 8.2e-82 308.1 247 59.9
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 3.8e-79 299.3 305 49.8
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 7.7e-72 275.0 269 52.8
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.2e-71 273.5 305 46.9
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 2.9e-71 273.1 174 73.6
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.8e-68 263.8 169 73.4
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 5.9e-56 222.2 178 61.8
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 1.2e-53 214.5 140 68.6
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 3.4e-51 206.5 131 72.5
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.7e-47 194.1 118 77.1
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 4.1e-33 146.4 94 73.4
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 9.5e-30 135.2 169 48.5
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.4e-25 120.6 66 83.3
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 2.1e-24 117.5 64 81.2
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 3.0e-23 113.6 99 53.5
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 7.3e-22 109.0 70 74.3
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 2.4e-17 94.0 169 34.9
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.6e-16 91.3 55 74.5
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 2.1e-13 80.9 204 29.4
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 4.7e-13 79.7 80 51.2
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.2e-11 75.1 67 50.7
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 1.2e-11 75.1 198 30.3
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 4.4e-11 73.2 192 29.2
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.1e-09 68.6 58 62.1
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 4.2e-09 66.6 36 86.1
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 4.2e-09 66.6 95 37.9
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 5.4e-09 66.2 213 28.2
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 1.2e-08 65.1 36 83.3
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 2.1e-08 64.3 40 70.0
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.0e-07 62.0 154 29.2
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 6.6e-07 59.3 79 44.3
BraA04t18006Z Brassica rapa HOM05D002024 ORTHO05D007288 1.5e-06 58.2 157 29.3
Cfa025086 Carpinus fangiana HOM05D015906 ORTHO05D028597 1.5e-06 58.2 205 25.4
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.5e-06 58.2 153 26.8
EL10Ac2g04414 Beta vulgaris HOM05D002024 ORTHO05D004352 1.9e-06 57.8 156 25.6
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 1.9e-06 57.8 182 27.5
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 1.9e-06 57.8 153 26.8
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.9e-06 57.8 153 26.8
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.3e-06 56.6 42 57.1
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 5.6e-06 56.2 153 26.8
A04p24930 Brassica napus HOM05D002024 ORTHO05D007288 5.6e-06 56.2 157 28.7
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 5.6e-06 56.2 152 25.7
Psat3g086680 Pisum sativum HOM05D002024 ORTHO05D004352 5.6e-06 56.2 157 27.4
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 7.3e-06 55.8 152 27.0
PGR042G3011 Punica granatum HOM05D002024 ORTHO05D007288 7.3e-06 55.8 173 28.9
Glyma.19G115100 Glycine max HOM05D002024 ORTHO05D004352 9.6e-06 55.5 152 27.0
Medtr7g086370 Medicago truncatula HOM05D002024 ORTHO05D004352 9.6e-06 55.5 156 25.6


User provided reference genes

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