Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28494 Brassica carinata HOM05D003704 ORTHO05D040007 3.8e-54 214.5 106 100.0
C04p60420 Brassica napus HOM05D003704 ORTHO05D040007 2.7e-47 191.8 97 97.9
BcaC02g07445 Brassica carinata HOM05D003704 ORTHO05D005892 2.0e-42 175.6 93 93.5
C04p66890 Brassica napus HOM05D003704 ORTHO05D005892 2.0e-42 175.6 93 93.5
BolC4t28191H Brassica oleracea HOM05D003704 ORTHO05D005892 2.0e-42 175.6 93 93.5
BraA04t18425Z Brassica rapa HOM05D003704 ORTHO05D005892 1.3e-41 172.9 93 92.5
Sp4g21160 Schrenkiella parvula HOM05D003704 ORTHO05D005892 1.8e-40 169.1 93 90.3
Thhalv10016138m.g Eutrema salsugineum HOM05D003704 ORTHO05D005892 3.1e-40 168.3 93 91.4
BcaB02g09152 Brassica carinata HOM05D003704 ORTHO05D005892 1.2e-39 166.4 93 90.3
BcaNung07214 Brassica carinata HOM05D003704 ORTHO05D005892 1.2e-39 166.4 93 90.3
C04p08870 Brassica napus HOM05D003704 ORTHO05D005892 1.2e-39 166.4 93 90.3
A05p07400 Brassica napus HOM05D003704 ORTHO05D005892 2.7e-39 165.2 93 89.2
BraA05t19706Z Brassica rapa HOM05D003704 ORTHO05D005892 2.7e-39 165.2 93 89.2
Aa31LG5G20910 Aethionema arabicum HOM05D003704 ORTHO05D005892 5.9e-39 164.1 101 81.2
AT2G38770 Arabidopsis thaliana HOM05D003704 ORTHO05D005892 7.8e-39 163.7 93 89.2
Carub.0004s2079 Capsella rubella HOM05D003704 ORTHO05D005892 7.8e-39 163.7 93 89.2
AL4G36070 Arabidopsis lyrata HOM05D003704 ORTHO05D005892 1.3e-38 162.9 93 88.2
BolC4t22475H Brassica oleracea HOM05D003704 ORTHO05D005892 1.7e-38 162.5 93 88.2
CARHR133480 Cardamine hirsuta HOM05D003704 ORTHO05D005892 5.0e-38 161.0 93 86.0
THA.LOC104801743 Tarenaya hassleriana HOM05D003704 ORTHO05D005892 2.2e-33 145.6 93 76.3
Atru.chr11.2491 Acer truncatum HOM05D003704 ORTHO05D005892 4.7e-28 127.9 100 62.0
Atru.chr11.2463 Acer truncatum HOM05D003704 ORTHO05D005892 1.0e-27 126.7 100 62.0
Thecc.05G198600 Theobroma cacao HOM05D003704 ORTHO05D005892 3.1e-27 125.2 100 64.0
Eucgr.G03254 Eucalyptus grandis HOM05D003704 ORTHO05D005892 4.0e-27 124.8 98 63.3
COL.COLO4_37421 Corchorus olitorius HOM05D003704 ORTHO05D005892 5.2e-27 124.4 100 63.0
Manes.04G164800 Manihot esculenta HOM05D003704 ORTHO05D005892 2.0e-26 122.5 88 69.3
PGR142G1874 Punica granatum HOM05D003704 ORTHO05D005892 2.6e-26 122.1 88 65.9
Ciclev10030496m.g Citrus clementina HOM05D003704 ORTHO05D005892 3.4e-26 121.7 98 61.2
Cpa.g.sc2782.1 Carica papaya HOM05D003704 ORTHO05D005892 4.4e-26 121.3 88 67.0
Gohir.D08G245550 Gossypium hirsutum HOM05D003704 ORTHO05D005892 4.4e-26 121.3 88 68.2
Gorai.004G262000 Gossypium raimondii HOM05D003704 ORTHO05D005892 4.4e-26 121.3 88 68.2
Hund15714 Selenicereus undatus HOM05D003704 ORTHO05D005892 4.4e-26 121.3 101 60.4
TWI15G0657 Tripterygium wilfordii HOM05D003704 ORTHO05D005892 4.4e-26 121.3 88 67.0
Duzib128G1318 Durio zibethinus HOM05D003704 ORTHO05D005892 5.8e-26 120.9 89 67.4
GSVIVG01000835001 Vitis vinifera HOM05D003704 ORTHO05D005892 5.8e-26 120.9 89 67.4
TAR628G1325 Trochodendron aralioides HOM05D003704 ORTHO05D005892 7.5e-26 120.6 88 67.0
MELO3C012449.2 Cucumis melo HOM05D003704 ORTHO05D005892 9.8e-26 120.2 98 62.2
Cfa010865 Carpinus fangiana HOM05D003704 ORTHO05D005892 1.3e-25 119.8 88 68.2
Gorai.010G147800 Gossypium raimondii HOM05D003704 ORTHO05D005892 1.3e-25 119.8 88 67.0
MD07G1033300 Malus domestica HOM05D003704 ORTHO05D005892 1.3e-25 119.8 95 60.0
Prupe.2G030100 Prunus persica HOM05D003704 ORTHO05D005892 1.3e-25 119.8 100 58.0
ClCG05G020780 Citrullus lanatus HOM05D003704 ORTHO05D005892 2.2e-25 119.0 88 65.9
GSVIVG01029933001 Vitis vinifera HOM05D003704 ORTHO05D005892 2.2e-25 119.0 89 66.3
Haze_03082 Corylus avellana HOM05D003704 ORTHO05D005892 2.9e-25 118.6 88 67.0
Gohir.A08G225100 Gossypium hirsutum HOM05D003704 ORTHO05D005892 2.9e-25 118.6 88 67.0
QL04p013824 Quercus lobata HOM05D003704 ORTHO05D005892 2.9e-25 118.6 95 63.2
CiPaw.13G011100 Carya illinoinensis HOM05D003704 ORTHO05D005892 3.7e-25 118.2 88 65.9
CsaV3_5G036520 Cucumis sativus L. HOM05D003704 ORTHO05D005892 3.7e-25 118.2 98 59.2
Aqoxy1G04161 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 1.1e-24 116.7 91 61.5
AUR62037223 Chenopodium quinoa HOM05D003704 ORTHO05D005892 1.1e-24 116.7 90 64.4
Sed0025295 Sechium edule HOM05D003704 ORTHO05D005892 1.9e-24 115.9 98 58.2
MD02G1293500 Malus domestica HOM05D003704 ORTHO05D005892 2.4e-24 115.5 85 63.5
AUR62026830 Chenopodium quinoa HOM05D003704 ORTHO05D005892 3.2e-24 115.2 90 62.2
Dinv32045 Davidia involucrata HOM05D003704 ORTHO05D005892 3.2e-24 115.2 94 63.8
CANSAT64G2305 Cannabis sativa HOM05D003704 ORTHO05D005892 4.1e-24 114.8 98 58.2
Nitab4.5_0000316g0110 Nicotiana tabacum HOM05D003704 ORTHO05D005892 5.4e-24 114.4 88 65.9
Ah.12g065080 Amaranthus hybridus HOM05D003704 ORTHO05D005892 7.0e-24 114.0 101 57.4
Sopen01g030440 Solanum pennellii HOM05D003704 ORTHO05D005892 7.0e-24 114.0 99 59.6
Sabra03G0148800 Salix brachista HOM05D003704 ORTHO05D005892 9.2e-24 113.6 95 58.9
Nitab4.5_0001888g0060 Nicotiana tabacum HOM05D003704 ORTHO05D005892 2.7e-23 112.1 88 63.6
Peaxi162Scf00309g00333 Petunia axillaris HOM05D003704 ORTHO05D005892 3.5e-23 111.7 88 62.5
EL10Ac2g02849 Beta vulgaris HOM05D003704 ORTHO05D005892 4.6e-23 111.3 89 59.6
CSS0035088 Camellia sinensis var. sinensis HOM05D003704 ORTHO05D005892 4.6e-23 111.3 100 60.0
Potri.003G201200 Populus trichocarpa HOM05D003704 ORTHO05D005892 4.6e-23 111.3 95 56.8
CAN.G1571.5 Capsicum annuum HOM05D003704 ORTHO05D005892 6.0e-23 110.9 89 62.9
Solyc01g068480.4 Solanum lycopersicum HOM05D003704 ORTHO05D005892 7.8e-23 110.5 99 58.6
vmacro12686 Vaccinium macrocarpon HOM05D003704 ORTHO05D005892 1.0e-22 110.2 90 60.0
Sc11g0006670 Simmondsia chinensis HOM05D003704 ORTHO05D005892 1.7e-22 109.4 114 50.0
Aqoxy263s005 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 2.3e-22 109.0 83 62.7
MSTRG.28042 Avicennia marina HOM05D003704 ORTHO05D005892 2.3e-22 109.0 89 59.6
Cc02_g29160 Coffea canephora HOM05D003704 ORTHO05D005892 2.3e-22 109.0 88 61.4
QL07p028220 Quercus lobata HOM05D003704 ORTHO05D005892 3.9e-22 108.2 84 65.5
HPP92_001562 Vanilla planifolia HOM05D003704 ORTHO05D005892 3.9e-22 108.2 87 59.8
Actinidia21525 Actinidia chinensis HOM05D003704 ORTHO05D005892 8.6e-22 107.1 88 61.4
FAN01G0955 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.1e-21 106.7 100 57.0
HanXRQChr17g0564051 Helianthus annuus HOM05D003704 ORTHO05D005892 1.1e-21 106.7 88 61.4
Rhsim01G0123500 Rhododendron simsii HOM05D003704 ORTHO05D005892 1.1e-21 106.7 101 54.5
FAN03G0678 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.5e-21 106.3 100 57.0
FAN10G3548 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.5e-21 106.3 100 57.0
DCAR_003239 Daucus carota HOM05D003704 ORTHO05D005892 1.9e-21 105.9 101 53.5
MBI05_g32455_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 1.9e-21 105.9 87 59.8
Migut.N01826 Erythranthe guttata HOM05D003704 ORTHO05D005892 2.5e-21 105.5 99 52.5
VMungo0251G0473 Vigna mungo HOM05D003704 ORTHO05D005892 3.3e-21 105.1 88 60.2
FvH4_7g02390 Fragaria vesca HOM05D003704 ORTHO05D005892 4.3e-21 104.8 100 56.0
FAN06G0794 Fragaria x ananassa HOM05D003704 ORTHO05D005892 4.3e-21 104.8 100 56.0
RcHm_v2.0_Chr1g0319731 Rosa chinensis HOM05D003704 ORTHO05D005892 4.3e-21 104.8 100 56.0
Oeu003918.1 Olea europaea HOM05D003704 ORTHO05D005892 5.6e-21 104.4 87 58.6
TPR.G35533 Trifolium pratense HOM05D003704 ORTHO05D005892 5.6e-21 104.4 89 59.6
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 7.3e-21 104.0 93 57.0
Glyma.20G000700 Glycine max HOM05D003704 ORTHO05D005892 9.5e-21 103.6 88 60.2
PSO541G6018 Papaver somniferum HOM05D003704 ORTHO05D005892 9.5e-21 103.6 90 56.7
PSO781G0253 Papaver somniferum HOM05D003704 ORTHO05D005892 9.5e-21 103.6 90 56.7
ECA234G1951 Erigeron canadensis HOM05D003704 ORTHO05D005892 1.2e-20 103.2 88 60.2
Migut.O00529 Erythranthe guttata HOM05D003704 ORTHO05D005892 1.2e-20 103.2 88 56.8
Lj2g0008107 Lotus japonicus HOM05D003704 ORTHO05D005892 1.6e-20 102.8 88 60.2
Lalb_Chr17g0337761 Lupinus albus HOM05D003704 ORTHO05D005892 1.6e-20 102.8 88 59.1
ATR0564G498 Amborella trichopoda HOM05D003704 ORTHO05D005892 3.6e-20 101.7 87 58.6
Medtr1g038815 Medicago truncatula HOM05D003704 ORTHO05D005892 4.7e-20 101.3 88 59.1
Psat6g100680 Pisum sativum HOM05D003704 ORTHO05D005892 4.7e-20 101.3 89 57.3
SEGI_24800 Sequoiadendron giganteum HOM05D003704 ORTHO05D005892 4.7e-20 101.3 87 59.8
Phvul.003G001700 Phaseolus vulgaris HOM05D003704 ORTHO05D005892 6.2e-20 100.9 87 59.8
Ca_12375_v3 Cicer arietinum L. HOM05D003704 ORTHO05D005892 1.1e-19 100.1 89 58.4
Glyma.09G285300 Glycine max HOM05D003704 ORTHO05D005892 1.1e-19 100.1 88 58.0
Lsat_1_v5_gn_4_29820 Lactuca sativa HOM05D003704 ORTHO05D005892 2.3e-19 99.0 88 58.0
SGA_v2.0_scaffold5G02930 Striga asiatica HOM05D003704 ORTHO05D005892 4.0e-19 98.2 97 49.5
Nn5g29073 Nelumbo nucifera HOM05D003704 ORTHO05D005892 5.2e-19 97.8 89 58.4
CDE02G2053 Ceratophyllum demersum HOM05D003704 ORTHO05D005892 1.2e-18 96.7 87 51.7
arahy.Tifrunner.gnm1.ann1.75MG08 Arachis hypogaea HOM05D003704 ORTHO05D005892 2.0e-18 95.9 89 55.1
Lj2A1006G35 Lonicera japonica HOM05D003704 ORTHO05D005892 2.6e-18 95.5 104 51.9
unitig_21.g20278 Utricularia gibba HOM05D003704 ORTHO05D005892 1.7e-17 92.8 102 52.0
Zm00001eb018810 Zea mays HOM05D003704 ORTHO05D005892 4.9e-17 91.3 93 47.3
arahy.Tifrunner.gnm1.ann1.RZB3JM Arachis hypogaea HOM05D003704 ORTHO05D005892 1.1e-16 90.1 82 57.3
Pp3c21_9820 Physcomitrium patens HOM05D003704 ORTHO05D005892 6.4e-09 64.3 87 40.2
SMO230G0016 Selaginella moellendorffii HOM05D003704 ORTHO05D005892 6.4e-09 64.3 95 36.8
Mapoly0170s0020 Marchantia polymorpha HOM05D003704 ORTHO05D005892 2.4e-08 62.4 95 37.9
CBR_g49869 Chara braunii HOM05D003704 ORTHO05D005892 1.6e-07 59.7 94 37.2
AagrBONN_evm.TU.Sc2ySwM_344.1100 Anthoceros agrestis HOM05D003704 ORTHO05D005892 3.5e-07 58.5 100 35.0


User provided reference genes

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