Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 2.1e-94 349.0 173 100.0
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 7.9e-65 250.8 159 81.1
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 2.6e-60 235.7 159 76.7
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.7e-59 233.0 161 74.5
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 2.9e-59 232.3 161 74.5
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 2.5e-58 229.2 154 76.6
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 1.6e-57 226.5 154 76.6
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 2.1e-57 226.1 159 73.0
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 3.9e-56 221.9 154 74.7
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 8.7e-56 220.7 161 71.4
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 1.1e-55 220.3 153 74.5
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 5.7e-55 218.0 153 73.9
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 3.8e-51 205.3 157 68.8
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 8.7e-48 194.1 169 58.6
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.1e-47 193.7 189 57.1
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 1.9e-47 193.0 120 76.7
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.5e-47 192.6 169 58.6
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 2.5e-47 192.6 122 73.0
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 9.7e-47 190.7 169 57.4
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 9.7e-47 190.7 170 58.8
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.3e-46 190.3 169 58.6
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 8.2e-46 187.6 120 73.3
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.1e-45 187.2 154 61.0
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.4e-45 186.8 119 70.6
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 1.4e-45 186.8 121 71.1
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 1.8e-45 186.4 119 73.1
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 2.4e-45 186.0 165 58.8
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 2.4e-45 186.0 165 58.8
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.4e-45 186.0 169 57.4
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 2.4e-45 186.0 119 72.3
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 5.3e-45 184.9 120 72.5
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 6.9e-45 184.5 127 70.1
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 6.9e-45 184.5 129 68.2
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 1.5e-44 183.3 119 72.3
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.5e-44 183.3 127 69.3
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 1.5e-44 183.3 119 73.1
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 1.5e-44 183.3 122 69.7
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.0e-44 183.0 169 57.4
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 2.6e-44 182.6 114 74.6
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 3.4e-44 182.2 121 70.2
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 3.4e-44 182.2 119 71.4
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 3.4e-44 182.2 129 66.7
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 3.4e-44 182.2 122 68.0
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 3.4e-44 182.2 117 72.6
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 4.5e-44 181.8 122 68.9
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 5.9e-44 181.4 170 54.1
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 5.9e-44 181.4 127 67.7
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 1.0e-43 180.6 140 62.9
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 1.0e-43 180.6 148 58.1
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.3e-43 180.3 127 68.5
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 1.7e-43 179.9 157 56.7
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 1.7e-43 179.9 127 68.5
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.7e-43 179.9 112 75.0
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.7e-43 179.9 144 60.4
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 2.2e-43 179.5 151 59.6
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.9e-43 179.1 119 70.6
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 3.8e-43 178.7 117 71.8
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 3.8e-43 178.7 122 67.2
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 3.8e-43 178.7 121 70.2
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.0e-43 178.3 151 57.6
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 5.0e-43 178.3 119 67.2
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 6.5e-43 177.9 127 67.7
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 1.1e-42 177.2 122 68.0
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.4e-42 176.8 122 67.2
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.9e-42 176.4 122 67.2
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.5e-42 176.0 119 69.7
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 2.5e-42 176.0 122 68.0
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 2.5e-42 176.0 122 66.4
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 3.2e-42 175.6 114 74.6
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 5.5e-42 174.9 122 67.2
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 5.5e-42 174.9 115 72.2
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 7.2e-42 174.5 122 66.4
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 1.2e-41 173.7 114 67.5
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 1.2e-41 173.7 122 68.9
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.2e-41 173.7 122 67.2
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.6e-41 173.3 153 58.8
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 1.6e-41 173.3 122 66.4
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.6e-41 173.3 127 66.9
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.6e-41 173.3 114 71.9
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 2.1e-41 172.9 122 62.3
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 2.1e-41 172.9 133 63.2
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 4.6e-41 171.8 125 64.0
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 3.9e-40 168.7 168 51.8
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 6.7e-40 167.9 129 61.2
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 6.7e-40 167.9 162 51.9
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 1.1e-39 167.2 141 61.7
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 2.5e-39 166.0 121 62.8
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 2.5e-39 166.0 167 53.9
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 5.7e-39 164.9 125 64.0
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 9.7e-39 164.1 142 59.2
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 8.2e-38 161.0 120 64.2
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 2.4e-37 159.5 127 59.1
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 5.3e-37 158.3 128 62.5
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 4.5e-36 155.2 126 60.3
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 1.1e-34 150.6 183 48.1
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 5.5e-34 148.3 112 60.7
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 2.1e-33 146.4 97 67.0
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 2.7e-33 146.0 122 60.7
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.8e-32 143.3 114 66.7
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 5.7e-31 138.3 103 63.1
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 5.7e-31 138.3 123 55.3
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 8.2e-30 134.4 119 58.0
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.1e-29 134.0 84 67.9
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 3.1e-29 132.5 120 55.0
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.1e-29 132.5 140 54.3
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 2.9e-27 125.9 132 51.5
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 5.0e-27 125.2 119 54.6
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 1.1e-26 124.0 137 49.6
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 2.5e-26 122.9 71 78.9
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.2e-25 120.6 120 55.0
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.1e-25 119.8 169 45.0
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 2.7e-25 119.4 78 71.8
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 3.3e-23 112.5 96 58.3
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 4.4e-23 112.1 76 69.7
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 4.4e-23 112.1 75 69.3
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 4.8e-22 108.6 78 66.7
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 1.4e-21 107.1 70 72.9
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 5.3e-21 105.1 78 64.1
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 1.3e-19 100.5 68 63.2
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.7e-19 100.1 72 80.6
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.1e-18 97.4 59 69.5
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 3.0e-16 89.4 53 71.7
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 8.8e-16 87.8 68 57.4
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 3.4e-15 85.9 78 56.4
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 8.3e-14 81.3 57 71.9
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 1.5e-10 70.5 48 72.9
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.2e-10 69.3 48 72.9
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.2e-10 68.9 48 72.9
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 9.4e-10 67.8 48 70.8
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 2.1e-09 66.6 82 50.0
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 2.1e-09 66.6 119 37.0
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.6e-09 65.9 41 73.2
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.0e-08 62.8 43 69.8
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 6.8e-08 61.6 43 60.5
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.8e-08 61.6 43 69.8
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 2.8e-06 56.2 37 70.3


User provided reference genes

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